# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1003.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1003 [L=2215] Description: # 1109815 # 1116459 # 1 # ID=1_1003;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.303 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-19 69.5 0.2 3.3e-19 69.5 0.2 4.3 4 Autotransporter Autotransporter beta-domain Domain annotation for each model (and alignments): >> Autotransporter Autotransporter beta-domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.9 1.0 0.12 2e+03 82 124 .. 718 758 .. 649 760 .. 0.74 2 ? -4.5 11.8 0.75 1.2e+04 37 217 .. 821 1006 .. 776 1020 .. 0.66 3 ? -2.3 0.2 0.15 2.6e+03 27 55 .. 1092 1120 .. 1074 1147 .. 0.72 4 ! 69.5 0.2 1.9e-23 3.3e-19 6 254 .. 1941 2193 .. 1937 2196 .. 0.87 Alignments for each domain: == domain 1 score: -1.9 bits; conditional E-value: 0.12 EEEEEEEEEEEEEEEEEECEETTCCEEEEEEEEEEEEEEEEEE CS Autotransporter 82 yldgvagygwydndtrrsvdlgglsdtakgdydgnglsaslea 124 + g ++yg+ + +++ ++ + +++gd d+n a+l+ 23726_FusoPortal_Gene_1003 718 HFTGMISYGRGNLRSSTAIN--KGTIELTGDSDSNIGMAALNS 758 56788888888885555554..445899999998887777766 PP == domain 2 score: -4.5 bits; conditional E-value: 0.75 TCCEEEEEEEEEEEEEEEE.....TTTTEEEEEEEEEEEEEEEEE.....ECTTEEEE.EEEEEEEEEEEEEEECEETTCC CS Autotransporter 37 gdnlrlGvafgygrssadv.....dgaggsgdvdgyslglYgtyq.....gagglyld.gvagygwydndtrrsvdlggls 106 +n ++G++ + g+ + + d +gd++ +l++Yg +++ + g+ag++ + +t+ ++l+ 23726_FusoPortal_Gene_1003 821 ASNGAVGIYSSGGTIDGSHaangvDIEVDDGDSEEKGLAVYGENGtdiklQNSKINVKkGIAGVAAFGANTK--INLN--- 896 556666666666666665555555555555666666666666666667664444444324444444444333..3445... PP EEEEEEEEEEEEEEEEEEEE-CEC.CGCEEEEEEE.EEEEEEEEEEEEE-SS-TTSEEEEEEEEEEEEEEEEEEEEEECCC CS Autotransporter 107 dtakgdydgnglsasleaGydfkl.sggwtlePqa.qltysrlkldgftesggaaaltvdsqdadsltgrlGlrlsydfdl 185 +a+ +y+g+g++a + +G +++l + ++ l a +++ + +++ t ++ +++++ ++d ++ + +s ++++ 23726_FusoPortal_Gene_1003 897 -GATLKYSGSGYAAYATGGGKIDLsNSRIELRGRAtGFEMAGSGTSPITLNS---NTRIHVYSNDVTVMNIKDMASLNYSN 973 .59*********************4444444444455666777777777777...88888888888888888777777777 PP TT.ECEEEEEEEEEEEECEE---EEEEEETTEC CS Autotransporter 186 gg.gkltpylraawqhefgddgktstasfagas 217 + ++++ yl+ a +h+ ++ ++ a+++g++ 23726_FusoPortal_Gene_1003 974 LNsTAFNSYLQGATVHAENGATDYKLAAVDGIG 1006 777899999999999987777777777755554 PP == domain 3 score: -2.3 bits; conditional E-value: 0.15 EEEEEEEEEETCCEEEEEEEEEEEEEEEE CS Autotransporter 27 gvqlGaDyrlgdnlrlGvafgygrssadv 55 ++++ aD+ ++ ++G+++ yg+ ++ + 23726_FusoPortal_Gene_1003 1092 NTTVTADRTDAGDGAVGLFVNYGTVNVAS 1120 45667788888888888888888877765 PP == domain 4 score: 69.5 bits; conditional E-value: 1.9e-23 EEEEEE..EE-BTTB--EEEEEEEEEEEEEEEETCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEE......EC CS Autotransporter 6 lggrgk..qdgtdgaagydadtggvqlGaDyrlgdnlrlGvafgygrssadvdgaggsgdvdgyslglYgtyq......ga 78 +g+rg+ +++++ ++ ++ +g + + ++ + +G++ g+ ++++++ + g+++ + + + + ++ 23726_FusoPortal_Gene_1003 1941 FGARGEykTNTAGVIDYKNYAYGVAYIHENESVKLGKDIGWYTGFVHNTFRF-EDIGKSKEEMLLGKIGMFKSipfdddNS 2020 455555325555555555677777777777888899999************9.9999999988888888888889***99* PP TTEEEEEEEEEEEEEEEEEEECEETTCCEEEEEEEEEEEEEEEEEEEE-CECCGCEEEEEEEEEEEEEEEEEEEE-SS-TT CS Autotransporter 79 gglyldgvagygwydndtrrsvdlgglsdtakgdydgnglsasleaGydfklsggwtlePqaqltysrlkldgftesggaa 159 +++++g + +g++++ +r++ + + +ak++y ++g+++ e+G++f+ls+++++ P++ l + +++ +e+ g+ 23726_FusoPortal_Gene_1003 2021 LNWTVSGNVFVGRNKM--HRKFLIVDEIFNAKSKYYAYGIGVKNEIGKEFRLSEDFSIRPYGALKLEYGRISKIKEKTGEI 2099 ****************..77777767777**************************************************** PP SEEEEEEEEEEEEEEEEEEEEEECCCTT.ECEEEEEEEEEEEECEE---EEEEEETTECCEEEE--...--BCEEEEEEEE CS Autotransporter 160 altvdsqdadsltgrlGlrlsydfdlgg.gkltpylraawqhefgddgktstasfagastagsftvfgaelgrdslelgaG 239 l+v+s+d+ s++ ++G +l+y++ + + +lt+ l +a+++e+g+ ++ + + a ta+++ + + e+ + +++++ + 23726_FusoPortal_Gene_1003 2100 RLEVKSNDYVSIKPEIGTELKYKYLFTNrKTLTVGLGVAYENELGKVANPKNKA-RVAYTAADWYNLRGEKEDRRGNIKTD 2179 *************************999999************88877777666.89999999****************** PP EEEEECTTEEEEEEE CS Autotransporter 240 leaqlsdnlslylny 254 l++ l +n+ +++++ 23726_FusoPortal_Gene_1003 2180 LTIGL-ENTRFGATA 2193 *****.777777665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (2215 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 595 (0.0356032); expected 334.2 (0.02) Passed bias filter: 305 (0.0182504); expected 334.2 (0.02) Passed Vit filter: 26 (0.00155577); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.40 # Mc/sec: 16097.69 // [ok]