# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1007.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1007 [L=268] Description: # 1118556 # 1119359 # 1 # ID=1_1007;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.254 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-72 242.2 5.1 7.5e-72 242.0 5.1 1.0 1 Hydrolase_3 haloacid dehalogenase-like hydrolase 2.6e-12 46.8 0.1 6.8e-07 29.0 0.0 2.1 2 S6PP Sucrose-6F-phosphate phosphohydrolase 9.3e-11 42.3 0.1 3.8e-09 37.1 0.1 3.1 1 Hydrolase haloacid dehalogenase-like hydrolase 2.2e-06 28.1 0.0 0.0018 18.6 0.0 2.6 2 HAD haloacid dehalogenase-like hydrolase 4.8e-05 23.4 2.6 0.009 16.0 0.0 3.3 3 HAD_2 Haloacid dehalogenase-like hydrolase 0.00019 21.4 0.1 0.0013 18.7 0.0 2.3 2 Hydrolase_6 Haloacid dehalogenase-like hydrolase 0.00024 20.6 0.8 0.55 9.6 0.1 2.6 3 DUF2608 Protein of unknown function (DUF2608) ------ inclusion threshold ------ 0.043 13.7 0.0 2.5 7.9 0.0 2.7 3 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family Domain annotation for each model (and alignments): >> Hydrolase_3 haloacid dehalogenase-like hydrolase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 242.0 5.1 3.6e-75 7.5e-72 1 254 [. 6 258 .. 6 259 .. 0.99 Alignments for each domain: == domain 1 score: 242.0 bits; conditional E-value: 3.6e-75 EEEEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEEECTTTEEEEE--B-HHH CS Hydrolase_3 1 ialDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGaliddekgkilykstisked 83 +++D+DGTLl+s++kis++t+++ikk++++gik++iATGR++ +++++ + l+l++++i++NGa +de+++ + ++i+ke 23726_FusoPortal_Gene_1007 6 VVCDMDGTLLTSNHKISDHTADVIKKIEDNGIKFMIATGRPYLDARYYRDTLKLKSFLITSNGARAHDEDNNPIVIENIPKEF 88 69********************************************************************************* PP HHHHHHHHHHTTCEEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCT CS Hydrolase_3 84 vkeiikllkennveillytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelkskln 166 vk+++++ ++++ ++y +d+++++ + + e +k++ ++ +id+ ++ e+ee+ak+++l ++e++++lek+++++++ 23726_FusoPortal_Gene_1007 89 VKRLLAYNVGKDIHRNIYLNDDWIIEYE---IEGLVEFHKESGYRFNIDNLNKYENEEAAKVFFLGKDEDIENLEKNMEKEFQ 168 ***************************9...99************************************************** PP TTEEEEEESTTEEEEEETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSE..EE--GG CS Hydrolase_3 167 klltitssskgyleimpkgvsKgtalkklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdy..vtksnn 247 ++l+it ss+++le+m+kgv+K+++lkk++k lni++eeviafGD++ND+eML+ +g + mgna+++++ a + v+++nn 23726_FusoPortal_Gene_1007 169 NDLSITISSPFCLEFMKKGVNKAETLKKVLKLLNIEPEEVIAFGDSMNDYEMLSLVGKPFIMGNANQRLIDALPNveVVGNNN 251 *************************************************************************99889***** PP GTHHHHH CS Hydrolase_3 248 edGVaka 254 edG+ k 23726_FusoPortal_Gene_1007 252 EDGIGKK 258 ****986 PP >> S6PP Sucrose-6F-phosphate phosphohydrolase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.9 0.0 3.2e-06 0.0066 3 70 .. 4 69 .. 2 80 .. 0.84 2 ! 29.0 0.0 3.2e-10 6.8e-07 111 214 .. 138 238 .. 91 248 .. 0.80 Alignments for each domain: == domain 1 score: 15.9 bits; conditional E-value: 3.2e-06 EEEEE-TBTTTB.S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHHHHHHT----SEEEETTTT CS S6PP 3 lllvsdLDntlvdgdnealarlnelleaeerkdvllvfaTGRsldsakellkeknllkPdvlitsvGt 70 +l+v d+D+tl++ +++ ++ +++++ e++ +++++aTGR + +a+ + +l + +lits G+ 23726_FusoPortal_Gene_1007 4 KLVVCDMDGTLLTSNHKISDHTADVIKKIEDNGIKFMIATGRPYLDARYYRDTLKLKS--FLITSNGA 69 689*********99999999999****99**************999998888877764..66666666 PP == domain 2 score: 29.0 bits; conditional E-value: 3.2e-10 -GGG-BTTBEEEEE-TTS-THHHHHHHHHHHTTTS-EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGG CS S6PP 111 peeeqrphKvSyfvdkekaaevlkeleqlLekreldvkviyssgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnD 193 + e++++ Kv ++ ++e+ +++ k++e+++ + d ++ +ss l + k+ +k+e+l+ +k l++e+e+++ Gds nD 23726_FusoPortal_Gene_1007 138 KYENEEAAKVFFLGKDEDIENLEKNMEKEF---QNDLSITISSPFCLEFMKKGVNKAETLKKVLKLLNIEPEEVIAFGDSMND 217 455666668888888888888656666553...4578999******************************************* PP HHHHTSSSEEEE-TT--HHHH CS S6PP 194 eelliggvlgVvVgnaqeell 214 e+l + ++gna++ l+ 23726_FusoPortal_Gene_1007 218 YEMLSLVGKPFIMGNANQRLI 238 ****99999999999999865 PP >> Hydrolase haloacid dehalogenase-like hydrolase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.1 0.1 1.8e-12 3.8e-09 1 207 [. 3 222 .. 3 225 .. 0.73 Alignments for each domain: == domain 1 score: 37.1 bits; conditional E-value: 1.8e-12 SCEEEEESBTTTBEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHETTTE..............HH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xx RF Hydrolase 1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrg..............ay 69 +k+vv D+dGTL+t+++ + d ++ + k+++ + +f +gr 23726_FusoPortal_Gene_1007 3 YKLVVCDMDGTLLTSNHKISDHTADV-----------------------IKKIEDNGIKFMIATGRPyldaryyrdtlklkS- 61 699*************9999999999.......................333333333333333333444433443334442. PP HHTHHHHHHHH.......HCHHHHHHHHHHHHHHCHHHHHHTCHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEH CS xxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF Hydrolase 70 aigkpewltal.......dippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnp 145 ++t++ d +p + ++i ++ + ++ + +++++ + + d + + e++ +v+ k+ g++ + + + n+ 23726_FusoPortal_Gene_1007 62 -----FLITSNgarahdeDNNPIVIENIPKEFVKRLLAYNVGKDIHRNIYLNDDWIIEYEIEGLVEFHKESGYR-FNIDNLNK 138 .....2222223333345668999999999999999999999*******************************5.55555555 PP HHHHHHHHH..TT............GGGCSEEEEHHCES........STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHH CS xxxxxxxxx..xx............xxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF Hydrolase 146 etaeraanq..lG............ddyfdaviasdiet........vakpspegkvaaireLqgkpeevamVGDgvnDaaal 206 e+aa+ lG ++ f++ ++++i+ + + e ++++++ L+++peev+++GD++nD ++l 23726_FusoPortal_Gene_1007 139 YENEEAAKVffLGkdedienleknmEKEFQNDLSITISSpfclefmkKGVNKAETLKKVLKLLNIEPEEVIAFGDSMNDYEML 221 444444443257798888888888777778888888888899998755555*******************************9 PP H CS x RF Hydrolase 207 a 207 23726_FusoPortal_Gene_1007 222 S 222 7 PP >> HAD haloacid dehalogenase-like hydrolase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.4 0.1 0.0023 4.8 1 14 [. 6 19 .. 6 133 .. 0.76 2 ! 18.6 0.0 8.8e-07 0.0018 148 187 .. 184 221 .. 149 222 .. 0.88 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0023 HAD 1 alfDfDgTLldgds 14 +++D+DgTLl+++ 23726_FusoPortal_Gene_1007 6 VVCDMDGTLLTSNH 19 79********9954 PP == domain 2 score: 18.6 bits; conditional E-value: 8.8e-07 HAD 148 pvrgegkvaalrewlaaegegidleevvayGDspsDlpll 187 + +g +k+ l++ + +i++eev+a+GDs++D+++l 23726_FusoPortal_Gene_1007 184 MKKGVNKAETLKK--VLKLLNIEPEEVIAFGDSMNDYEML 221 568999*******..88888899999*************9 PP >> HAD_2 Haloacid dehalogenase-like hydrolase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 0.1 0.015 31 78 122 .. 19 63 .. 10 88 .. 0.86 2 ? -0.6 0.1 0.54 1.1e+03 27 60 .. 134 167 .. 124 190 .. 0.74 3 ! 16.0 0.0 4.3e-06 0.009 138 167 .. 191 220 .. 181 230 .. 0.87 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.015 HAD_2 78 vkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyF 122 k+ d+ +++++++++g+k i+T + ++ + l+++s++ 23726_FusoPortal_Gene_1007 19 HKISDHTADVIKKIEDNGIKFMIATGRPYLDARYYRDTLKLKSFL 63 56789999******************9999888888888888775 PP == domain 2 score: -0.6 bits; conditional E-value: 0.54 HAD_2 27 yglselseeelrkliglslrellrklgeseeeee 60 +l+++++ee +k++ l +e +++l+++ e+e 23726_FusoPortal_Gene_1007 134 DNLNKYENEEAAKVFFLGKDEDIENLEKNMEKEF 167 5677888888888888888888888888766543 PP == domain 3 score: 16.0 bits; conditional E-value: 4.3e-06 HAD_2 138 peviekaleklklkkeeviyvGDsptDiea 167 +e+++k+l+ l++++eevi +GDs +D e 23726_FusoPortal_Gene_1007 191 AETLKKVLKLLNIEPEEVIAFGDSMNDYEM 220 7899***********************986 PP >> Hydrolase_6 Haloacid dehalogenase-like hydrolase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.0 6.1e-07 0.0013 1 45 [. 6 51 .. 6 76 .. 0.77 2 ? -1.1 0.0 0.92 1.9e+03 78 97 .. 142 161 .. 132 163 .. 0.79 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 6.1e-07 EEEESTTTSEE.TTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HH CS Hydrolase_6 1 flfDidGvLwr.gdkaipgaaealnalraagkpvvllTNnssrsee 45 +++D+dG+L+ ++k+ ++ a++++ ++++g+++++ T + + 23726_FusoPortal_Gene_1007 6 VVCDMDGTLLTsNHKISDHTADVIKKIEDNGIKFMIATGRPYLDAR 51 69*******9836677899************999998866555544 PP == domain 2 score: -1.1 bits; conditional E-value: 0.92 SXXXEEEEESXHHHHHHHHH CS Hydrolase_6 78 kadkkvlvigeeglreelke 97 ++ kv+ +g++++ e l++ 23726_FusoPortal_Gene_1007 142 EEAAKVFFLGKDEDIENLEK 161 56889******999888876 PP >> DUF2608 Protein of unknown function (DUF2608) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.5 0.1 0.00056 1.2 19 40 .. 4 25 .. 1 53 [. 0.82 2 ? 1.8 0.0 0.063 1.3e+02 81 108 .. 19 46 .. 17 72 .. 0.83 3 ! 9.6 0.1 0.00026 0.55 158 190 .. 183 215 .. 182 222 .. 0.89 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.00056 DUF2608 19 tLvvfDiDdtLltstealgsda 40 Lvv D+D tLlts+++++ 23726_FusoPortal_Gene_1007 4 KLVVCDMDGTLLTSNHKISDHT 25 59*************9997655 PP == domain 2 score: 1.8 bits; conditional E-value: 0.063 DUF2608 81 klvekevpslvnnlqnqgttvlaLTars 108 ++ ++++++++++ +g++ ++ T r 23726_FusoPortal_Gene_1007 19 HKISDHTADVIKKIEDNGIKFMIATGRP 46 56888999**************999764 PP == domain 3 score: 9.6 bits; conditional E-value: 0.00026 DUF2608 158 lftsglnKGeaLlklLdkigrepksviFiDDkk 190 ++ +g+nK e L+k+L+ ++ ep++vi D+ 23726_FusoPortal_Gene_1007 183 FMKKGVNKAETLKKVLKLLNIEPEEVIAFGDSM 215 89************************9777665 PP >> Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 0.0 0.53 1.1e+03 24 54 .. 16 46 .. 5 86 .. 0.69 2 ? 7.9 0.0 0.0012 2.5 35 79 .. 135 178 .. 124 212 .. 0.72 3 ? 2.0 0.0 0.076 1.6e+02 44 79 .. 217 252 .. 205 264 .. 0.82 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 0.53 Glyco_tran_WecB 24 pervagidlieelleraeeeglrvfllGgkp 54 ++++ +d + ++++++e++g+++++ g+p 23726_FusoPortal_Gene_1007 16 TSNHKISDHTADVIKKIEDNGIKFMIATGRP 46 5556666777777777777677766666654 PP == domain 2 score: 7.9 bits; conditional E-value: 0.0012 Glyco_tran_WecB 35 elleraeeeglrvfllGgkpevlekaaerlrekyp.glriagthdg 79 +l ++ +ee +vf+lG + e +e+++++++++++ +l i +++++ 23726_FusoPortal_Gene_1007 135 NLNKYENEEAAKVFFLGKD-EDIENLEKNMEKEFQnDLSI-TISSP 178 44455566699******99.679**********9614444.44555 PP == domain 3 score: 2.0 bits; conditional E-value: 0.076 Glyco_tran_WecB 44 glrvfllGgkpevlekaaerlrekypglriagthdg 79 ++ + l gkp ++ +a +rl + +p+++++g ++ 23726_FusoPortal_Gene_1007 217 DYEMLSLVGKPFIMGNANQRLIDALPNVEVVGNNNE 252 56677778899999*****************97765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (268 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 937 (0.0560675); expected 334.2 (0.02) Passed bias filter: 618 (0.0369794); expected 334.2 (0.02) Passed Vit filter: 54 (0.00323121); expected 16.7 (0.001) Passed Fwd filter: 8 (0.000478698); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.38u 0.42s 00:00:00.80 Elapsed: 00:00:00.54 # Mc/sec: 1442.75 // [ok]