# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_102.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_102 [L=248] Description: # 120955 # 121698 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.2e-29 100.5 0.0 3.3e-19 69.2 0.0 2.1 2 PseudoU_synth_1 tRNA pseudouridine synthase 0.00031 20.5 0.0 0.00045 20.0 0.0 1.4 1 DUF2344 Uncharacterized protein conserved in bacteri Domain annotation for each model (and alignments): >> PseudoU_synth_1 tRNA pseudouridine synthase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 29.5 0.0 9.2e-11 7.6e-07 4 106 .. 13 106 .. 11 108 .. 0.95 2 ! 69.2 0.0 3.9e-23 3.3e-19 3 107 .. 147 247 .. 145 247 .. 0.94 Alignments for each domain: == domain 1 score: 29.5 bits; conditional E-value: 9.2e-11 PseudoU_synth_1 4 elvGthdfgsfrkqkqekkstvrtileaaveevsgeekellvitvkgsgFldhqVRamvgvlfavgqgklspedvkellnarkr 87 +++G+ ++g f q+q++k tv+ +e ++ v++e +i++ ++g++d++V+a +v ++ +++ e+ k ll ++ 23726_FusoPortal_Gene_102 13 RYDGSSYYG-F--QRQPNKITVQGEIEKVLRIVTKE-----EINLISAGRTDRGVHANHQVSNFYTSSNIPIEKYKYLLTRALP 88 79*******.*..9*****************99999.....9****************************************** PP PseudoU_synth_1 88 tkiavptapavglvlfhvr 106 ++i + ++++v++ f++r 23726_FusoPortal_Gene_102 89 NDIDILSVEEVDE-NFNAR 106 ***9999999998.77776 PP == domain 2 score: 69.2 bits; conditional E-value: 3.9e-23 PseudoU_synth_1 3 kelvGthdfgsfrkqkqekkstvrtileaaveevsgeekellvitvkgsgFldhqVRamvgvlfavgqgklspedvkellnark 86 ++G hdf++fr +++ +k tvr+i++++v+ + ++ ++i +kgs+Fl++qVR+mvg+++++ g+l ++ ++ +ln + 23726_FusoPortal_Gene_102 147 SDFIGVHDFKNFRLSDCVSKVTVREIYQIEVKYFGEN---KIKIYIKGSAFLKSQVRIMVGTALEIYYGRLLENHIRLMLNDFT 227 579*****************************55555...69****************************************** PP PseudoU_synth_1 87 rtkiavptapavglvlfhvrY 107 ++ + + ++a+gl+l +++Y 23726_FusoPortal_Gene_102 228 KEY-KKNLVEAEGLYLNKIEY 247 887.99************999 PP >> DUF2344 Uncharacterized protein conserved in bacteria (DUF2344) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.0 0.0 5.3e-08 0.00045 56 137 .. 58 143 .. 49 193 .. 0.80 Alignments for each domain: == domain 1 score: 20.0 bits; conditional E-value: 5.3e-08 DUF2344 56 GveSegEyldielteevdpeevverLnaqlpegikileveeieek.akslmallaaaeYrve....eleealeeflaaeeilve 134 Gv +++ + ++ ++++++e+ + L ++lp++i+il+vee++e+ + a++++ Y ++ +e++ +f+ +e+i+ e 23726_FusoPortal_Gene_102 58 GVHANHQVSNFYTSSNIPIEKYKYLLTRALPNDIDILSVEEVDENfNARHNAKMREYIYIISweknPFEARYCKFV-KEKIVAE 140 88889999999999*****************************996666667777777777665674455555555.4555555 PP DUF2344 135 kkt 137 k + 23726_FusoPortal_Gene_102 141 KLE 143 544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (248 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 639 (0.038236); expected 334.2 (0.02) Passed bias filter: 345 (0.0206438); expected 334.2 (0.02) Passed Vit filter: 26 (0.00155577); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.27u 0.26s 00:00:00.53 Elapsed: 00:00:00.35 # Mc/sec: 2059.84 // [ok]