# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1020.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1020 [L=145] Description: # 1131261 # 1131695 # -1 # ID=1_1020;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.202 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0023 17.5 0.0 0.0031 17.0 0.0 1.2 1 SLT Transglycosylase SLT domain Domain annotation for each model (and alignments): >> SLT Transglycosylase SLT domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 1.9e-07 0.0031 27 86 .. 29 96 .. 28 118 .. 0.83 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 1.9e-07 T-TT-B-TTSEBTTTTBETTTHHHHHHHHT.-SHHHHCSHHHHHHHHHHHHHHHHHTTTT.......H CS SLT 27 fnpkAvsksgavGLmQimpstakrlglrvk.lsedelldPeknisagakyLkslykqyng.......s 86 f ++A+ k +vG+ Qi s++ ++ ++ + +++l++P +i++ + ++k+ +++yn+ + 23726_FusoPortal_Gene_1020 29 FYERAIKKDISVGISQIKISNIANILRQSPiMFKKNLFKPSFSINVMTLIIKKIFNEYNDcsdyfngD 96 6678999999************998776558****************************876655554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (145 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 618 (0.0369794); expected 334.2 (0.02) Passed bias filter: 252 (0.015079); expected 334.2 (0.02) Passed Vit filter: 19 (0.00113691); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.22u 0.24s 00:00:00.46 Elapsed: 00:00:00.32 # Mc/sec: 1317.25 // [ok]