# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1048.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1048 [L=437] Description: # 1157345 # 1158655 # -1 # ID=1_1048;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.288 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.5e-42 143.3 44.6 8.5e-42 143.3 44.6 2.3 2 CitMHS Citrate transporter 5.7e-14 52.0 41.2 9.4e-10 38.1 21.7 2.2 2 Na_H_antiporter Na+/H+ antiporter family 8.6e-07 27.7 49.1 2.1e-05 23.1 15.2 2.4 2 DcuC C4-dicarboxylate anaerobic carrier ------ inclusion threshold ------ 0.011 15.8 4.1 0.011 15.8 4.1 4.0 5 Na_H_antiport_2 Na+-H+ antiporter family Domain annotation for each model (and alignments): >> CitMHS Citrate transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 143.3 44.6 2e-45 8.5e-42 22 300 .] 19 381 .. 1 381 [. 0.86 2 ! 3.2 6.1 0.0096 40 118 168 .. 372 434 .. 361 435 .. 0.71 Alignments for each domain: == domain 1 score: 143.3 bits; conditional E-value: 2e-45 x.........xxxxxx...xxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF CitMHS 22 l.........vltiee...alsgiaspii...............llllgamiigaaleetGlfdrlaakllrlaggkrdllvl 77 + ++ti+ ++g++++ + +l+++ ++++++++++G+fd l++kl+++ag++ +vl 23726_FusoPortal_Gene_1048 19 FkeksipmilFITIPViaaFIAGFSIEEVdgfikdgiktvsnmaILFIFSVTFFGIMSDAGMFDILVNKLVKKAGKN---VVL 98 13332222222333332222333333322555555557778888*******************************94...78* PP xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF CitMHS 78 lvlltallsafvsndgv....vlimipivlslakrlkklppllliplalaaniggaltpiGtpttraa............... 141 ++++ta+++ f ++dg+ vl++ip++l+l+k+++ +p lll++ + ++++++ l+p+G+p +raa 23726_FusoPortal_Gene_1048 99 IAIVTAIIAIFSHLDGAtvttVLVTIPALLPLYKKMNIRPQLLLLITGCGMGVMN-LLPWGGPVVRAAavlnmdvndlwhlli 180 ***********************************9889989*************.*************************** PP ..................................................xxxxxxxxxxxxxxxxxxxx....xxxxxxxxx RF CitMHS 142 ..................................................arpglslpnllllalllvgl....lplvllfmf 170 +r +l+l+nlll+ ++lv+l +p +++fmf 23726_FusoPortal_Gene_1048 181 piqimgliatfalavvmairevkyygagqvndlilnvnssdevdnsvenlKRSKLVLFNLLLTFAVLVVLlfnkFPNYFVFMF 263 **************************************************************8888887889*********** PP xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx RF CitMHS 171 gvalalpvnapkvkkqkaiieaiarsllpvatilllaykkveWsvlllfaGvfllvgaleqtGilealadllga...ggplva 250 g +al+vn+p+ k+qka+i+a+++++l+v +++ l+aG+f++ +l+++G+lea+ l + + + + 23726_FusoPortal_Gene_1048 264 GCSIALLVNYPNIKEQKARIKAHTSAALDVSAVM-------------LAAGIFVG--VLGKSGMLEAMTVPLLKiipSFI-AK 330 **********************************.............********..***********977734442222.22 PP x.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF CitMHS 251 l.alvlglial.lsafisnvavaalmapialgmapalgl.lspsplalalavg 300 + lv+g++al l ++++++++ ++p+a+++ ++ + ++p +a+a+++g 23726_FusoPortal_Gene_1048 331 YlQLVMGVLALpLGTIVGTDSYFYGIMPLAMEVGQN--YaIEPLNMAIAMLIG 381 25788***************************7775..5599********998 PP == domain 2 score: 3.2 bits; conditional E-value: 0.0096 xxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxx RF CitMHS 118 iplalaaniggaltpiGtpttraa............arpglslpnllllalllvgllplvllf 168 +++a+a+ ig +++ p+++a + ++ sl+ l++l l++ ++++++ ++ 23726_FusoPortal_Gene_1048 372 LNMAIAMLIGKNISLLVSPMVPATflaigltntelkDHLKYSLIPLWILSLIMLIFAVIIGMV 434 3556666666666666666555556666********999999999999999999777777665 PP >> Na_H_antiporter Na+/H+ antiporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 38.1 21.7 2.2e-13 9.4e-10 108 302 .. 9 198 .. 1 199 [. 0.87 2 ! 19.9 11.5 7.6e-08 0.00032 131 300 .. 261 430 .. 223 435 .. 0.79 Alignments for each domain: == domain 1 score: 38.1 bits; conditional E-value: 2.2e-13 Na_H_antiporter 108 ivkafivalafqntdvatalvvgalaglivatllelaslseidkllnrGiksmlgaililllAwgiggvlealgvteslvssl 190 i ++v l+f++ ++ ++l+ + +++i a++ ++ s++e+d+ +++Gik++ + ++ ++++++ g++ + g+++ lv++l 23726_FusoPortal_Gene_1048 9 IMLFLVVFLLFKEKSIPMILF--ITIPVIAAFIAGF-SIEEVDGFIKDGIKTVSNMAILFIFSVTFFGIMSDAGMFDILVNKL 88 333445666688876666666..8889999999998.********************************************** PP Na_H_antiporter 191 akgv.vskgllplilflvallvafatGtswgtigIilpiavplaaklgisllalvraveaggtlgdhlsPisdttilsstgln 272 +k++ +++ l+++++ ++a++ G t++++ p + pl++k++i + l+ ++ g + l P++ + ++ ln 23726_FusoPortal_Gene_1048 89 VKKAgKNVVLIAIVTAIIAIFSHLD-GATVTTVLVTIPALLPLYKKMNIRP-QLLLLITGCGMGVMNLLPWGGPVVRAAAVLN 169 ********************97765.66678999****************9.8899999999999*****************9 PP Na_H_antiporter 273 adhidhvsytqlpyallvapitailllvfG 302 +d d + + +p+ ++ ++t+ l +v++ 23726_FusoPortal_Gene_1048 170 MDVNDLWH-LLIPIQIMGLIATFALAVVMA 198 99888888.999999999999888888776 PP == domain 2 score: 19.9 bits; conditional E-value: 7.6e-08 Na_H_antiporter 131 alaglivatllelaslseidkllnrGiksmlgaililllAwgiggvlealgvteslvsslakgvvs..kgllplilflvallv 211 +++g +a+l+++ +++e ++ +++ l + +++l+A + gvl++ g++e+ l+k + s +++l l++ ++al 23726_FusoPortal_Gene_1048 261 FMFGCSIALLVNYPNIKEQKARIKAHTSAALDVSAVMLAAGIFVGVLGKSGMLEAMTVPLLKIIPSfiAKYLQLVMGVLALPL 343 4455555666665577888888888888899999******************************77789************88 PP Na_H_antiporter 212 afatGtswgtigIilpiavplaaklgisllalvraveag...gtlgdhlsPisdttilsstglnadhidhvsytqlpyallva 291 Gt gI +p+a +++ +++i++l+++ a + g + l+++++P+ +i+ + + dh++y+ +p +l 23726_FusoPortal_Gene_1048 344 GTIVGTDSYFYGI-MPLAMEVGQNYAIEPLNMAIAMLIGkniSLLVSPMVPATFLAIGLTNTE---LKDHLKYSLIPLWILSL 422 8888888776776.59*************7777776666447889999999999999999999...9******9999888877 PP Na_H_antiporter 292 pitailllv 300 i++i ++ 23726_FusoPortal_Gene_1048 423 -IMLIFAVI 430 .33443333 PP >> DcuC C4-dicarboxylate anaerobic carrier # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.3 25.9 3.7e-05 0.16 286 463 .. 26 197 .. 2 199 .. 0.84 2 ! 23.1 15.2 5e-09 2.1e-05 240 463 .. 221 432 .. 212 434 .. 0.75 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 3.7e-05 DcuC 286 avlflamgilvefiaklnglkekeiveafveGaaellgvalvvglargveviaeggmiidtilnlisnalsglsgivfilvml 368 ++lf+++ ++ +fia+++ +++ +++ +G +++ +a + ++ + i+ + + d + n + + ++++++v+i + + 23726_FusoPortal_Gene_1048 26 MILFITIPVIAAFIAGFSIEEVDGFIK---DGIKTVSNMAILFIFSVTFFGIMSDAGMFDILVN--KLVKKAGKNVVLIAIVT 103 689************777776666665...7888887779999999998889999999998876..45678899999999999 PP DcuC 369 liqallafvvpSgsglavltmplmapLAdlvgvpralvvlafqlasgllniisPtsgvvvatlglarvsfgtwvkfvakllav 451 i+a+++ + + + ++t+p + pL ++++++++l+ l + g++n++ P g vv +++++++++++++ +++ ++ 23726_FusoPortal_Gene_1048 104 AIIAIFSHLDGATVTTVLVTIPALLPLYKKMNIRPQLLLLITGCGMGVMNLL-PWGGPVVRAAAVLNMDVNDLWHLLIPIQIM 185 999***********************************************76.999*************************** PP DcuC 452 llvvsillliva 463 +l+ +++l +v+ 23726_FusoPortal_Gene_1048 186 GLIATFALAVVM 197 *****9998886 PP == domain 2 score: 23.1 bits; conditional E-value: 5e-09 DcuC 240 kekseseesfskrqkvvlilfvlplilvllglafvivngewylpeiavlflamgilvefiaklnglkekeiveafveGaaell 322 +e ++s e+ kr k+vl+ ++l++ ++++ l f+ ++ y++ + + +++ ++ + n +++k+ ++a + a ++ 23726_FusoPortal_Gene_1048 221 DEVDNSVEN-LKRSKLVLFNLLLTFAVLVV-LLFNKFPN--YFVFMFGCS--IAL---LVNYPNIKEQKARIKAHTSAALDV- 293 455555555.48999999999999988888.44444442..443333332..223...344467899999*****9999999. PP DcuC 323 gvalvvglargvev.iaeggmiidtilnlisnalsglsgivfilvmlliqallafvvpSgsglavltmplmapLAdlvgvpra 404 v+la g+ v +++ +++++ + +++ + + lvm ++ ++l+ +v+ ++ mpl+ ++++ +++ 23726_FusoPortal_Gene_1048 294 ---SAVMLAAGIFVgVLGKSGMLEAMTVPLLKIIPSFIAKYLQLVMGVLALPLGTIVGT-DSYFYGIMPLAMEVGQNYAIEPL 372 ...5578888876633333345566666555566666666788999********99986.569******************** PP DcuC 405 lvvlafqlasgllniisPtsgvvvatlglarvsfgtwvkfvakllav.llvvsillliva 463 + +a+ ++++++ ++sP+ + + gl + ++++ +k+ +++l + l++ i+++i+ 23726_FusoPortal_Gene_1048 373 NMAIAMLIGKNISLLVSPMVPATFLAIGLTNTELKDHLKYSLIPLWIlSLIMLIFAVIIG 432 ******************998888899*************98887551578888777765 PP >> Na_H_antiport_2 Na+-H+ antiporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.8 4.1 2.6e-06 0.011 11 86 .. 14 91 .. 2 93 .. 0.76 2 ? -3.1 0.7 2 8.5e+03 2 12 .. 96 106 .. 95 123 .. 0.58 3 ? -1.6 0.4 0.69 2.9e+03 7 25 .. 182 200 .. 176 259 .. 0.58 4 ? -0.9 2.0 0.42 1.8e+03 39 86 .. 276 323 .. 236 325 .. 0.61 5 ? -0.9 0.0 0.41 1.7e+03 66 83 .. 397 414 .. 371 418 .. 0.71 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 2.6e-06 Na_H_antiport_2 11 lvLsllr...vnvvlallisalvgGlvgglsleetieafasGlgggaevAlsyallGafAvaisksgltdllvkkvikl 86 +v l++ + ++l ++i +++ +++g+s+ee+ +++G+++ +++A+ ++ +f ++s +g+ d+lv+k++k+ 23726_FusoPortal_Gene_1048 14 VVFLLFKeksIPMILFITI-PVIAAFIAGFSIEEVDGFIKDGIKTVSNMAILFIFSVTFFGIMSDAGMFDILVNKLVKK 91 2233333323444444444.467889********999999************************************986 PP == domain 2 score: -3.1 bits; conditional E-value: 2 Na_H_antiport_2 2 avviavlvmlv 12 v+ia++ +++ 23726_FusoPortal_Gene_1048 96 VVLIAIVTAII 106 44444444433 PP == domain 3 score: -1.6 bits; conditional E-value: 0.69 Na_H_antiport_2 7 vlvmlvLsllrvnvvlall 25 + +m +++ + + vv+a+ 23726_FusoPortal_Gene_1048 182 IQIMGLIATFALAVVMAIR 200 5555555555666666553 PP == domain 4 score: -0.9 bits; conditional E-value: 0.42 Na_H_antiport_2 39 leetieafasGlgggaevAlsyallGafAvaisksgltdllvkkvikl 86 ++e + +++ +v + G f ++ ksg+ +++ ++k+ 23726_FusoPortal_Gene_1048 276 IKEQKARIKAHTSAALDVSAVMLAAGIFVGVLGKSGMLEAMTVPLLKI 323 555544444444445555555566788999999999999888776665 PP == domain 5 score: -0.9 bits; conditional E-value: 0.41 Na_H_antiport_2 66 fAvaisksgltdllvkkv 83 +A+ ++++ l+d l ++ 23726_FusoPortal_Gene_1048 397 LAIGLTNTELKDHLKYSL 414 577788888888776655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (437 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1043 (0.0624102); expected 334.2 (0.02) Passed bias filter: 328 (0.0196266); expected 334.2 (0.02) Passed Vit filter: 38 (0.00227382); expected 16.7 (0.001) Passed Fwd filter: 10 (0.000598372); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 4 [number of targets reported over threshold] # CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.34 # Mc/sec: 3736.39 // [ok]