# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_106.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_106 [L=426] Description: # 125893 # 127170 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.318 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-179 596.9 0.2 2.1e-179 596.8 0.2 1.0 1 Adenylsucc_synt Adenylosuccinate synthetase Domain annotation for each model (and alignments): >> Adenylsucc_synt Adenylosuccinate synthetase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 596.8 0.2 1.2e-183 2.1e-179 2 419 .] 5 420 .. 4 420 .. 0.99 Alignments for each domain: == domain 1 score: 596.8 bits; conditional E-value: 1.2e-183 EEEE-SSS-S-HHHHHHHHHTT-SEEEE-SB-TTSSEEEEETTEEEEESSS-GGGGSTT-EEEE-TTBEE-HHHHHHHHTTSS- CS Adenylsucc_synt 2 vvvGaqwGDEGKGkivDllaeeadvvvRfqGGanAGHtvvvdgkkyklhllpSGilnpgvvnviGngvvvdpealleEieelea 85 vvvG+qwGDEGKGki+D+l+e+ad+vvRfqGG+nAGHtvvvdg+k+ l+llpSG+l++g ++viG+gvv+dp+++l+Ei+++e+ 23726_FusoPortal_Gene_106 5 VVVGTQWGDEGKGKIIDVLSEKADYVVRFQGGNNAGHTVVVDGEKFILQLLPSGVLQAG-TCVIGPGVVIDPKVFLDEIDRIEK 87 9*******************************************************755.78********************** PP TT......TEEEETTSEE--HHHHHHHHHHHHH----------TTHHHHHHHHHTT---BGGGGGSHHHHHHHHHHHHHHTHHH CS Adenylsucc_synt 86 kgvelveerllisdrahlvlpyhkalDkleeaakgkkkiGtTkkGiGpayadkvarrgirvgdlldeeeleeklekllelknkl 169 +g ++ ++++isdrah+v+pyh+++Dk++e+ +++ kiGtTkkGiGp+yadk++r gir+ dlld +++eekl+ +l++kn++ 23726_FusoPortal_Gene_106 88 RGAKT--DHVIISDRAHVVMPYHIEMDKIRESVEDRIKIGTTKKGIGPCYADKISRDGIRMSDLLDLKQFEEKLRYNLKEKNEI 169 **966..8*************************9999*********************************************** PP HHHT....T-----HHHHHHHHHHHHGGGEE-HHHHHHHHHHTT--EEEE--S-GGG-TTTSSTTSS-SS--SHHHHHHHTT-- CS Adenylsucc_synt 170 lekldk.eeleveelleellkyaerlkplvvdtvallnealkegkkvLfEGaqgtllDidhGtYPfvTsSnttaggaltglgla 252 ++k++ e+l++++++ee++ yae++k+ +vdt ++n+al+e+k vLfEGaq+++lDi++GtYP+vTsS++t+gg++tg+g++ 23726_FusoPortal_Gene_106 170 FTKIYGlEPLDFDTIFEEYKGYAEKIKHRIVDTIPIVNKALDENKLVLFEGAQAMMLDINYGTYPYVTSSSPTLGGVTTGAGIS 253 ****999***************************************************************************** PP GGGEEEEEEEEESSEEESSSS--TTB--SHHHHHHHHHTT-B-TTT--B-EEE-EEHHHHHHHHHHHT-SEEEEE-GGGGTT-S CS Adenylsucc_synt 253 pkkidevlgvvKAyttrvGeGpfptelkdevgeklrekGkEfgtttgrpRrcGwlDlvllryavrvngvtelaltklDvldgld 336 p+kid+ +gv+KAyttrvGeGpf te+k+e g+k+r +G+E+g++tgrpRrcGwlDlv+ rya+++ng+t++++tk+Dvl+gl 23726_FusoPortal_Gene_106 254 PRKIDKGIGVMKAYTTRVGEGPFVTEIKGEFGDKIRGIGGEYGAVTGRPRRCGWLDLVVGRYATEINGLTDIVMTKIDVLSGLG 337 ************************************************************************************ PP EEEEEEEEEETTEEESS--S.....-GEEEEEEEEE--.S--TT---GGGS-HHHHHHHHHHHHHHTS-EEEEE-SSSTT-EE CS Adenylsucc_synt 337 eikvcvaYkldgkeldefpasleelekvepvyeelpgWkedisgvrsfedlpenakkyvefieellgvpvkiisvGpereqti 419 ++k+c+aY++dgk+ +++pa++++l+++ p+yeel+gW+edi++++++edlp n++ky+e+++e+lg+p++++svGp+r+q i 23726_FusoPortal_Gene_106 338 KLKICTAYEIDGKIHEYVPADTKSLDRAIPIYEELDGWDEDITQIKKYEDLPVNCRKYLERVQEILGCPISVVSVGPDRSQNI 420 *************999***************************************************************9976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (426 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 559 (0.033449); expected 334.2 (0.02) Passed bias filter: 516 (0.030876); expected 334.2 (0.02) Passed Vit filter: 37 (0.00221398); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.32u 0.28s 00:00:00.60 Elapsed: 00:00:00.35 # Mc/sec: 3538.27 // [ok]