# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1063.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1063 [L=144] Description: # 1170780 # 1171211 # -1 # ID=1_1063;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.266 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-26 91.5 1.2 3.1e-26 91.0 1.2 1.2 1 Zn_Tnp_IS91 Transposase zinc-binding domain ------ inclusion threshold ------ 0.042 13.6 2.9 1.7 8.5 0.3 2.6 2 zf-C2H2_3 zinc-finger of acetyl-transferase ESCO 0.085 12.1 0.0 0.16 11.2 0.0 1.4 1 DUF5066 Domain of unknown function (DUF5066) 0.09 12.8 4.2 0.19 11.8 4.2 1.5 1 Zn-ribbon_8 Zinc ribbon domain 0.14 12.0 3.9 6.2 6.7 0.3 2.6 2 zinc_ribbon_4 zinc-ribbon domain 0.4 10.6 3.5 10 6.1 3.5 2.2 1 CpXC CpXC protein 0.64 9.7 6.1 3.1 7.5 0.6 2.4 2 zinc_ribbon_2 zinc-ribbon domain 0.78 9.6 6.0 3.1 7.6 1.5 2.6 2 TFIIS_C Transcription factor S-II (TFIIS) 4.4 6.8 6.9 87 2.6 6.9 2.3 1 zf-ribbon_3 zinc-ribbon domain 6 6.9 8.3 94 3.1 8.3 2.3 1 UPF0547 Uncharacterised protein family UPF0547 Domain annotation for each model (and alignments): >> Zn_Tnp_IS91 Transposase zinc-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 91.0 1.2 1.8e-29 3.1e-26 12 108 .. 23 116 .. 13 117 .. 0.92 Alignments for each domain: == domain 1 score: 91.0 bits; conditional E-value: 1.8e-29 Zn_Tnp_IS91 12 akhkkklsksqkkaveailkCrtealggaeykCedCgheklvynsCknrhCpkCqakateewlekqkeellpveyfhvvfTlp 94 +++ +++k ++++l Cr+ + + +y+C++Cgh ++++ +Ck+r Cp+C+ k+++ w++k+ +++l+++++ + fT+p 23726_FusoPortal_Gene_1063 23 TQQ---HLEYIKASINKFLLCRNIKASFIKYTCTECGHYHTIPITCKSRLCPSCGFKYSATWTQKMINDILNIPHRYILFTIP 102 443...4788999********************************************************************** PP Zn_Tnp_IS91 95 keLrelflsnkkll 108 keLr++f ++++ll 23726_FusoPortal_Gene_1063 103 KELRAFFCYDRTLL 116 ********999875 PP >> zf-C2H2_3 zinc-finger of acetyl-transferase ESCO # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.2 0.013 22 9 20 .. 45 56 .. 42 60 .. 0.86 2 ? 8.5 0.3 0.00099 1.7 14 25 .. 67 79 .. 62 82 .. 0.82 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.013 zf-C2H2_3 9 ksfgastCkeCg 20 sf + tC+eCg 23726_FusoPortal_Gene_1063 45 ASFIKYTCTECG 56 5788999****9 PP == domain 2 score: 8.5 bits; conditional E-value: 0.00099 zf-C2H2_3 14 st.CkeCgMvYnp 25 s+ C+ Cg +Y++ 23726_FusoPortal_Gene_1063 67 SRlCPSCGFKYSA 79 445********97 PP >> DUF5066 Domain of unknown function (DUF5066) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 9.3e-05 0.16 46 75 .. 99 128 .. 90 139 .. 0.81 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 9.3e-05 DUF5066 46 aelpeslkallaydcdlkspygqkvleylv 75 ++p+ l+a++ yd+ l+s++++ v e++ 23726_FusoPortal_Gene_1063 99 FTIPKELRAFFCYDRTLLSKFAKAVNEVMK 128 579*******************99988765 PP >> Zn-ribbon_8 Zinc ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 4.2 0.00011 0.19 6 33 .. 50 74 .. 48 78 .. 0.77 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.00011 Zn-ribbon_8 6 YrCeeCghefevlqsisdapltaCPeCg 33 Y C+eCgh +++ + + CP+Cg 23726_FusoPortal_Gene_1063 50 YTCTECGHYHTIPITCK---SRLCPSCG 74 9******9999444333...556****9 PP >> zinc_ribbon_4 zinc-ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.8 0.3 0.0074 12 19 33 .. 43 57 .. 40 60 .. 0.83 2 ? 6.7 0.3 0.0037 6.2 5 13 .. 70 78 .. 69 78 .. 0.92 Alignments for each domain: == domain 1 score: 5.8 bits; conditional E-value: 0.0074 zinc_ribbon_4 19 lpakgvkvrCskCgh 33 ++a+ k +C+ Cgh 23726_FusoPortal_Gene_1063 43 IKASFIKYTCTECGH 57 667778999*****9 PP == domain 2 score: 6.7 bits; conditional E-value: 0.0037 zinc_ribbon_4 5 CpsCkakye 13 CpsC++ky+ 23726_FusoPortal_Gene_1063 70 CPSCGFKYS 78 *******95 PP >> CpXC CpXC protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.1 3.5 0.006 10 32 53 .. 44 65 .. 22 131 .. 0.82 Alignments for each domain: == domain 1 score: 6.1 bits; conditional E-value: 0.006 CpXC 32 dgslfeatCpkCgatakleapl 53 + s+ ++tC +Cg+ +++++ + 23726_FusoPortal_Gene_1063 44 KASFIKYTCTECGHYHTIPITC 65 6688999999999999988776 PP >> zinc_ribbon_2 zinc-ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.5 0.6 0.016 27 16 21 .. 52 57 .. 47 59 .. 0.70 2 ? 7.5 0.6 0.0019 3.1 12 22 .. 66 76 .. 62 79 .. 0.73 Alignments for each domain: == domain 1 score: 4.5 bits; conditional E-value: 0.016 zinc_ribbon_2 16 CpyCGt 21 C+ CG+ 23726_FusoPortal_Gene_1063 52 CTECGH 57 666665 PP == domain 2 score: 7.5 bits; conditional E-value: 0.0019 zinc_ribbon_2 12 nakFCpyCGtp 22 +++ Cp CG++ 23726_FusoPortal_Gene_1063 66 KSRLCPSCGFK 76 56778888865 PP >> TFIIS_C Transcription factor S-II (TFIIS) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 1.5 0.0018 3.1 27 36 .. 48 57 .. 40 60 .. 0.88 2 ? 3.7 0.2 0.032 54 3 14 .. 70 81 .. 68 85 .. 0.70 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.0018 TFIIS_C 27 vfykCtkCgh 36 + y+Ct+Cgh 23726_FusoPortal_Gene_1063 48 IKYTCTECGH 57 67*******9 PP == domain 2 score: 3.7 bits; conditional E-value: 0.032 TFIIS_C 3 CpkCgsreayff 14 Cp+Cg + + 23726_FusoPortal_Gene_1063 70 CPSCGFKYSATW 81 999998765555 PP >> zf-ribbon_3 zinc-ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.6 6.9 0.052 87 3 25 .. 50 76 .. 48 76 .. 0.65 Alignments for each domain: == domain 1 score: 2.6 bits; conditional E-value: 0.052 zf-ribbon_3 3 vrCPnCGa.p...lssddnvCpyCGtk 25 ++C +CG+ + ++ + Cp+CG k 23726_FusoPortal_Gene_1063 50 YTCTECGHyHtipITCKSRLCPSCGFK 76 56777776664223445789****975 PP >> UPF0547 Uncharacterised protein family UPF0547 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 8.3 0.056 94 3 25 .. 52 78 .. 51 79 .. 0.74 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 0.056 UPF0547 3 CPeCe..akvPvaaqf..CphCGyvFq 25 C eC +++P+ +++ Cp CG+ ++ 23726_FusoPortal_Gene_1063 52 CTECGhyHTIPITCKSrlCPSCGFKYS 78 667763358999997666******887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (144 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 902 (0.0539732); expected 334.2 (0.02) Passed bias filter: 463 (0.0277046); expected 334.2 (0.02) Passed Vit filter: 70 (0.00418861); expected 16.7 (0.001) Passed Fwd filter: 10 (0.000598372); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.25u 0.25s 00:00:00.50 Elapsed: 00:00:00.33 # Mc/sec: 1268.52 // [ok]