# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1075.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1075 [L=499] Description: # 1182399 # 1183895 # 1 # ID=1_1075;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.248 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1e-20 74.9 47.2 1.3e-17 64.9 13.5 2.7 2 DKNYY DKNYY family ------ inclusion threshold ------ 0.084 12.8 5.8 0.48 10.4 0.1 2.4 2 DUF2116 Uncharacterized protein containing a Zn-ribbon (DUF Domain annotation for each model (and alignments): >> DKNYY DKNYY family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 64.9 13.5 1.5e-21 1.3e-17 15 143 .] 85 243 .. 79 243 .. 0.73 2 ! 24.1 25.7 5.6e-09 4.7e-05 1 135 [. 200 375 .. 200 404 .. 0.70 Alignments for each domain: == domain 1 score: 64.9 bits; conditional E-value: 1.5e-21 DKNYY 15 ikgaDlksFkvLn.....edkyakDknnvYykgkkiseidpknlkil............................esfelikk 64 ++g+D++sF+vLn ++ + Dkn+vY+++ is++dp++l+++ e +++ 23726_FusoPortal_Gene_1075 85 LNGVDINSFRVLNlgdrdTRIIGLDKNHVYFGNIAISDLDPNKLEVIgngyysdgtttyfcsplsernenlstsmE---IFQF 164 689*************9889999******************99999977777777666666655555544442221...2220 PP DKNYY 65 ........ikdknnvYvkdekkekekkkkikkadsktFeildsg..yakDknnvYykgkkiegadaksFkvik.dkkyakDkn 136 k ++++Y k+ +++ +++ ++++ +a+D ++vYykg+ +e+ad +++k ++ +++y++Dk+ 23726_FusoPortal_Gene_1075 165 liysfsktKKPQTYIY----------PYKKVETN-NKLIAVKDLyyFATDGEKVYYKGEILENADLNTLKSVDgYNEYFADKE 236 2223333344444444..........44444444.4566664442366*************************99******** PP DKNYY 137 kvYykek 143 +vYyk+k 23726_FusoPortal_Gene_1075 237 NVYYKSK 243 ****986 PP == domain 2 score: 24.1 bits; conditional E-value: 5.6e-09 DKNYY 1 yskdknnvYyenkkikgaDlksFkvLn.edkyakDknnvYykgkkiseidpknlkil.........................e 57 ++ d ++vYy+++++++aDl++ k ++ ++y+ Dk+nvYyk k + ++ +l ++ + 23726_FusoPortal_Gene_1075 200 FATDGEKVYYKGEILENADLNTLKSVDgYNEYFADKENVYYKSKLLPIKNSGKLMVIsaeqgdkflydeangyvfiedysfdR 282 78899**********************999**********8777766666655555588888777777776666665544440 PP DKNYY 58 sfelikk..................ikdknnvYvkdekkekekkkkikkadsktFeildsgyakDknnvYykg.....kkieg 117 + + +++ +Y ++ ++ek++ k +++ + + e + + +D++n+Yy++ k ++ 23726_FusoPortal_Gene_1075 283 ------EkapykvignngnhlynlaFVNNEGIY-YYDDQEKKQLKAGDNIFIGNIEEISPNIFTDDKNIYYFHaydvwKNYKN 358 ......044555554445555555577777777.5555555555666778888888888889999999999986644433333 PP DKNYY 118 adaksFkvikdkkyakDk 135 + F + y+ Dk 23726_FusoPortal_Gene_1075 359 GGSVLFSRN-TEIYYLDK 375 333333333.45555555 PP >> DUF2116 Uncharacterized protein containing a Zn-ribbon (DUF2116) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 0.1 5.7e-05 0.48 26 58 .. 8 39 .. 4 40 .. 0.88 2 ? 3.2 2.5 0.0099 82 27 53 .. 464 490 .. 462 496 .. 0.78 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 5.7e-05 DUF2116 26 eeyekkrkkvarsqqilfgililllavvlvlkf 58 ee++ k+k+ ++ i+ ++i+ la++++l++ 23726_FusoPortal_Gene_1075 8 EEFNFKKKRSSNTLFIIKIVFII-LAIFAILSS 39 89999****99999999999988.*****9986 PP == domain 2 score: 3.2 bits; conditional E-value: 0.0099 DUF2116 27 eyekkrkkvarsqqilfgililllavv 53 +y+++r +a+ +i+++i++++ +++ 23726_FusoPortal_Gene_1075 464 KYKSARITMAKYSKIFLVIIVIVSVII 490 589999999*****9998888855544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (499 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1037 (0.0620512); expected 334.2 (0.02) Passed bias filter: 550 (0.0329105); expected 334.2 (0.02) Passed Vit filter: 47 (0.00281235); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.33 # Mc/sec: 4395.78 // [ok]