# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1076.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1076 [L=531] Description: # 1183892 # 1185484 # 1 # ID=1_1076;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.231 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.3e-18 66.1 25.2 5.3e-18 66.1 25.2 2.8 2 DKNYY DKNYY family ------ inclusion threshold ------ 0.037 13.8 5.6 0.76 9.5 0.4 2.5 2 Pox_LP_H2 Viral late protein H2 0.044 13.0 4.8 0.17 11.1 0.4 2.2 2 7TM_GPCR_Sru Serpentine type 7TM GPCR chemoreceptor Sru 0.044 13.9 5.7 0.55 10.4 0.3 2.9 2 Pox_EPC_I2-L1 Poxvirus entry protein complex L1 and I2 0.091 12.5 0.2 2.9 7.7 0.1 2.7 2 TFIIIC_sub6 TFIIIC subunit 0.26 10.5 9.4 1.1 8.5 1.5 2.4 2 AgrB Accessory gene regulator B Domain annotation for each model (and alignments): >> DKNYY DKNYY family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 66.1 25.2 1.9e-21 5.3e-18 1 143 [] 67 243 .. 67 243 .. 0.77 2 ? -6.0 16.4 6 1.7e+04 24 117 .. 332 454 .. 265 474 .. 0.63 Alignments for each domain: == domain 1 score: 66.1 bits; conditional E-value: 1.9e-21 DKNYY 1 yskdknnvYyenk....kikgaDlksFkvLn.....edkyakDknnvYykgkkiseidpknlkil...............esf 59 y+k+k+++Y+ +++++D+ sFkvL+ ++++a DknnvY+++ +i +++p++l + ++f 23726_FusoPortal_Gene_1076 67 YIKYKDKIYACVYedayQLDDVDIGSFKVLDsmdysDSYVAVDKNNVYFGNISIPDLKPDKLYTVgnnyysdginsyfclNTF 149 89999999998333467******************99999**********************999988888888866666444 PP DKNYY 60 elikk......ikdknnvY......vkdekkekekkkkikkadsktFeildsg..yakDknnvYykgkkiegadaksFkvik. 127 + + i + Y ++ +e+ + +k+ +++ k+++++++ +a+D ++vYy+g+++e+ad ++++ ++ 23726_FusoPortal_Gene_1076 150 KKNEDlankskI----RQYieyyffEGEKPQEYSYPFKKVETN-KSLKAVKNLsyFATDGEKVYYQGEVLENADLNTLRAVDr 227 333314544332....333333443333334444455555555.89****4444488*************************9 PP DKNYY 128 dkkyakDknkvYykek 143 +k+y++Dk++vYyk+k 23726_FusoPortal_Gene_1076 228 YKEYFADKENVYYKSK 243 9************986 PP == domain 2 score: -6.0 bits; conditional E-value: 6 DKNYY 24 kvLnedkyakDknnvY....ykgkkiseidpknlkil................esfelikk..........ikdknnvYvkde 76 + +n +++ D++n+Y y ++ + ++ ++ ++ ++ e ik k ++++Y+++ 23726_FusoPortal_Gene_1076 332 EEIN-PSVISDDKNIYylhsY---NVYKKKKTKYGYMdvlvsknigifyldekKNWEKIKDiasgttgqvwKKGSRYYYFDNL 410 4566.6777777777744331...33333332332223335555555555554333333313456666665666666666666 PP DKNYY 77 kkekekkkkikka.dsktFeil.dsgya.kDknnvYykgkkieg 117 ++ + +i ++ d t+e l d++y+ +D+ + +++ kki 23726_FusoPortal_Gene_1076 411 GVHQLIDDVIYEIkDNRTLEKLlDTKYIsTDEIREFVRSKKIIA 454 66666666665552455777666666655777777777766544 PP >> Pox_LP_H2 Viral late protein H2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 0.4 0.00027 0.76 7 63 .. 2 63 .. 1 116 [. 0.78 2 ? 6.4 0.6 0.0024 6.8 6 76 .. 453 521 .. 448 529 .. 0.70 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00027 Pox_LP_H2 7 svngleleyvrekeaksiraakvstliffvlilaisvlllllqv.....sdnsvlselakya 63 ++ng +l+ +ek++k+ + t++++++i+++ +++++++ +++++l++ +ky+ 23726_FusoPortal_Gene_1076 2 KINGEDLSISKEKNSKKTLLKIIITFLLIIIIFTLYEFFFIFKIksdydFNQEILNNGQKYE 63 799***************************************98322112334555555554 PP == domain 2 score: 6.4 bits; conditional E-value: 0.0024 Pox_LP_H2 6 lsvngleleyvrekeaksiraakvstliffvlilaisvlllllqvsdnsvlselaky.ariknavksWkplv 76 + v+g e+ + k ++ ++a+ ++ff i+ai++l+l+l+ ++++ e++k + ik++ k+ pl+ 23726_FusoPortal_Gene_1076 453 IAVKGEEVTTASVK-YEESHIAEIFLIVFFATIIAITALILYLKWRNMKL--EMKKIdEEIKKKNKKIEPLI 521 56666666655544.44567899999***************999876654..34443156777777777776 PP >> 7TM_GPCR_Sru Serpentine type 7TM GPCR chemoreceptor Sru # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 0.4 0.01 29 192 245 .. 16 67 .. 7 82 .. 0.59 2 ? 11.1 0.4 6.2e-05 0.17 194 241 .. 470 518 .. 452 523 .. 0.82 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.01 7TM_GPCR_Sru 192 lrnsiillvfsvfvlilii.ilnillllklrklkklssssqskskksqkaelsLt 245 +++ ++++++++++i+i+ + ++ ++k+++ +q+ ++ qk e+s+ 23726_FusoPortal_Gene_1076 16 SKKTLLKIIITFLLIIIIFtLYEFFFIFKIKSDYDF---NQEILNNGQKYEKSIY 67 345555666665555444314466777777776432...3455555666666665 PP == domain 2 score: 11.1 bits; conditional E-value: 6.2e-05 7TM_GPCR_Sru 194 nsiillvfsvfvliliiilnillllklrklkk.lssssqskskksqkae 241 i +++++vf ++i i+ ++l+lk r++k ++++ ++ +kk++k+e 23726_FusoPortal_Gene_1076 470 SHIAEIFLIVFFATIIAITALILYLKWRNMKLeMKKIDEEIKKKNKKIE 518 67889999**********************7656777788888888887 PP >> Pox_EPC_I2-L1 Poxvirus entry protein complex L1 and I2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.7 1.0 0.012 33 41 67 .. 14 40 .. 5 46 .. 0.36 2 ? 10.4 0.3 0.0002 0.55 30 70 .. 455 495 .. 439 497 .. 0.78 Alignments for each domain: == domain 1 score: 4.7 bits; conditional E-value: 0.012 Pox_EPC_I2-L1 41 assgtklwltlliili.avlilvlllfl 67 ++s +k+ l+++i+++ +++i l+ f+ 23726_FusoPortal_Gene_1076 14 KNS-KKTLLKIIITFLlIIIIFTLYEFF 40 222.222233333332022233333222 PP == domain 2 score: 10.4 bits; conditional E-value: 0.0002 Pox_EPC_I2-L1 30 VLtdekaskktassgtklwltlliiliavlilvlllflylK 70 V +e ++++++ + +++ +li+++a +i++ l lylK 23726_FusoPortal_Gene_1076 455 VKGEEVTTASVKYEESHIAEIFLIVFFATIIAITALILYLK 495 555666777777777888777*******************9 PP >> TFIIIC_sub6 TFIIIC subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.7 0.1 0.0011 2.9 12 27 .. 67 82 .. 67 83 .. 0.91 2 ? 1.8 0.0 0.071 2e+02 14 26 .. 321 333 .. 321 334 .. 0.88 Alignments for each domain: == domain 1 score: 7.7 bits; conditional E-value: 0.0011 EEEETTEEEEEEEE-- CS TFIIIC_sub6 12 llqiggkvfeGeweet 27 ++++ +k++ + +e++ 23726_FusoPortal_Gene_1076 67 YIKYKDKIYACVYEDA 82 69************96 PP == domain 2 score: 1.8 bits; conditional E-value: 0.071 EETTEEEEEEEE- CS TFIIIC_sub6 14 qiggkvfeGewee 26 ++++++f+Ge ee 23726_FusoPortal_Gene_1076 321 RVRDNIFIGEIEE 333 689*******987 PP >> AgrB Accessory gene regulator B # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.9 1.3 0.0024 6.6 136 159 .. 12 36 .. 4 55 .. 0.60 2 ? 8.5 1.5 0.00038 1.1 101 143 .. 473 517 .. 461 523 .. 0.85 Alignments for each domain: == domain 1 score: 5.9 bits; conditional E-value: 0.0024 AgrB 136 ekrkklki.lsiivllilliialll 159 ++++ +k l ii++++l+ii+++l 23726_FusoPortal_Gene_1076 12 KEKNSKKTlLKIIITFLLIIIIFTL 36 3344444426666666666666655 PP == domain 2 score: 8.5 bits; conditional E-value: 0.00038 AgrB 101 s..lllillliilliisliiilllaPvdtpnkpisskekrkklki 143 +l++++++i++i++li+ l++ ++ + k+i+++ k+k++ki 23726_FusoPortal_Gene_1076 473 AeiFLIVFFATIIAITALILYLKWRNMKLEMKKIDEEIKKKNKKI 517 14467889999999****************************998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (531 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1736 (0.103877); expected 334.2 (0.02) Passed bias filter: 655 (0.0391934); expected 334.2 (0.02) Passed Vit filter: 66 (0.00394926); expected 16.7 (0.001) Passed Fwd filter: 8 (0.000478698); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.34 # Mc/sec: 4540.10 // [ok]