# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_108.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_108 [L=219] Description: # 129131 # 129787 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.244 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-74 249.5 3.2 2.9e-74 249.3 3.2 1.0 1 Cytidylate_kin Cytidylate kinase 1.8e-10 41.2 1.0 3e-10 40.4 1.0 1.3 1 Cytidylate_kin2 Cytidylate kinase-like family 1.1e-09 38.8 2.0 2.7e-09 37.5 1.1 2.1 1 AAA_18 AAA domain 2e-06 28.2 1.4 3.4e-05 24.2 0.8 2.8 2 AAA_17 AAA domain 7e-05 23.3 2.6 0.00014 22.3 2.6 1.7 1 ABC_tran ABC transporter 0.00024 21.1 0.7 0.002 18.1 0.0 2.4 2 ADK Adenylate kinase 0.00057 19.9 0.5 0.0021 18.1 0.1 2.1 2 SKI Shikimate kinase 0.0016 17.5 0.1 0.0033 16.4 0.1 1.6 1 NB-ARC NB-ARC domain 0.002 18.2 0.1 0.0064 16.6 0.1 2.1 1 AAA_33 AAA domain 0.0026 18.1 0.3 0.004 17.5 0.2 1.7 1 AAA ATPase family associated with various cellul 0.0045 16.6 0.7 0.22 11.1 0.0 2.9 3 Thymidylate_kin Thymidylate kinase 0.0056 16.5 7.8 0.22 11.3 7.8 2.7 1 dNK Deoxynucleoside kinase ------ inclusion threshold ------ 0.014 15.5 0.1 0.024 14.8 0.0 1.7 1 AAA_22 AAA domain 0.023 14.5 0.1 0.08 12.8 0.0 1.9 3 NACHT NACHT domain 0.026 14.1 0.1 0.06 12.9 0.1 1.6 1 CoaE Dephospho-CoA kinase 0.031 14.6 0.1 0.064 13.5 0.1 1.6 1 RNA_helicase RNA helicase 0.033 14.1 0.0 0.049 13.5 0.0 1.4 1 TsaE Threonylcarbamoyl adenosine biosynthesis pro 0.035 13.8 0.8 0.12 12.0 0.1 2.3 2 PRK Phosphoribulokinase / Uridine kinase family 0.04 13.9 2.4 0.051 13.5 0.5 2.3 2 AAA_14 AAA domain 0.047 13.3 0.0 0.098 12.3 0.0 1.6 1 AAA_30 AAA domain 0.071 13.0 0.0 0.17 11.7 0.0 1.8 1 AAA_5 AAA domain (dynein-related subfamily) 0.091 12.4 0.0 0.2 11.3 0.0 1.6 1 AAA_29 P-loop containing region of AAA domain 0.098 12.9 0.0 0.29 11.4 0.0 1.7 2 AAA_16 AAA ATPase domain 0.11 12.5 0.0 0.28 11.2 0.0 1.6 1 Torsin Torsin 0.14 11.9 0.3 0.61 9.8 0.0 2.1 3 CPT Chloramphenicol phosphotransferase-like prot 0.99 9.4 8.2 0.96 9.4 0.1 2.9 3 DUF87 Domain of unknown function DUF87 Domain annotation for each model (and alignments): >> Cytidylate_kin Cytidylate kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 249.3 3.2 4.5e-77 2.9e-74 1 210 [. 6 215 .. 6 216 .. 0.99 Alignments for each domain: == domain 1 score: 249.3 bits; conditional E-value: 4.5e-77 EEEE-STTSSHHHHHHHHHHHHT-EEEEHHHHHHHHHHHHHHTT--TT-HHHHHHHHHT--EEEEEEEEEETTEE-TTGGGSHH CS Cytidylate_kin 1 iaiDGPagsGKssvaralaeklglkyldtgalYRalalaalrrkvdlldeaalvelakevelsfeaekvllngedveeelrsde 84 +aiDGPagsGKs++a+++a+k++++y+dtga+YR+++l l++++d+ d +++++ +k+++l ++++k++lng dv++++r + 23726_FusoPortal_Gene_108 6 VAIDGPAGSGKSTIAKLIAKKFNFTYIDTGAMYRMITLYLLENNIDFDDLKEIEKALKNINLDMQEDKFYLNGIDVSTKIREKR 89 79********************************************************************************** PP HHHHHHHHTTSHHHHHHHHHHHHTT-BSSBEEEEESSIIIIISTT-SEEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHH CS Cytidylate_kin 85 vekavSavaaipavRailvkklrelvkkarvvveGRDigtvvfpdaelKifldAsveeRakRRlkqlkakgtsvsleellaeik 168 +++ vS+va+i+ vR++lv+++r++ ++++v+++GRDigtvvfp+a++Kifl A +eeRa+RR++++ +k + +++e+l+++k 23726_FusoPortal_Gene_108 90 INENVSKVASIKIVRDNLVNLQRKISNNKNVILDGRDIGTVVFPNAKVKIFLVAAAEERARRRYNEFLEKKVEITYDEVLKSLK 173 ************************************************************************************ PP HHHHHHHCTSSS-S---TT-EEEETTTS-HHHHHHHHHHHHH CS Cytidylate_kin 169 eRDklDkerevgpLklaedaliidtskltieevvekilelik 210 eRD D++r+ +pLk+a++a+ +dt++ltie+v++ i ++i+ 23726_FusoPortal_Gene_108 174 ERDYIDSTRKESPLKKADEAIELDTTNLTIEDVINFISKKIE 215 ************************************999886 PP >> Cytidylate_kin2 Cytidylate kinase-like family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 40.4 1.0 4.7e-13 3e-10 1 150 [. 5 176 .. 5 186 .. 0.77 Alignments for each domain: == domain 1 score: 40.4 bits; conditional E-value: 4.7e-13 Cytidylate_kin2 1 vITIsrqyGsgGreigekLAekLgipfydreiieevaeelgiseeev.ekydeksrlksllskllaarvagdtl.......... 73 +++I++ Gsg+++i++ +A+k+++ ++d + +++ ++ ++ ++e ++++l+++ +++d++ 23726_FusoPortal_Gene_108 5 IVAIDGPAGSGKSTIAKLIAKKFNFTYIDTGAMYRMITLYLLENNIDfDDLKE---IEKALKNINLD-MQEDKFylngidvstk 84 79****************************99888888887776665344444...45555555433.5555556666789999 PP Cytidylate_kin2 74 ..........dekldde.lfeaqsrvirelaaeescvilGR.cadyiLkdrpnvlsvfltapledrv.....krvaereglsee 140 ++ + ++++ ++ r++ +++++++ GR + +++ + + +++fl+a e+r+ + +++ +++ + 23726_FusoPortal_Gene_108 85 irekrinenvSKVASIKiVRDNLVNLQRKISNNKNVILDGRdIGTVVFPNAK--VKIFLVAAAEERArrrynEFLEKKVEITYD 166 **98888877444444425555588888889788*******55888888866..*************6666555777779999* PP Cytidylate_kin2 141 earekiketD 150 e+ + +ke+D 23726_FusoPortal_Gene_108 167 EVLKSLKERD 176 ******9998 PP >> AAA_18 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.5 1.1 4.2e-12 2.7e-09 1 110 [. 6 152 .. 6 170 .. 0.84 Alignments for each domain: == domain 1 score: 37.5 bits; conditional E-value: 4.2e-12 AAA_18 1 IlltGtpGvGKttlareLskrlgf........................gvnlrdvakenglllevdpe....aldeskrldedk 56 +++ G++G+GK+t+a+ ++k+ +f + ++ a +n l++++++ +d s +++e++ 23726_FusoPortal_Gene_108 6 VAIDGPAGSGKSTIAKLIAKKFNFtyidtgamyrmitlyllennidfdDLKEIEKALKNINLDMQEDKfylnGIDVSTKIREKR 89 6788*****************999********7777777777777777555555555555555555557999888888888888 PP AAA_18 57 ldklldaleenss..........aleegenlvvdghlaelfserakdikkvvLtaspeelleRl 110 +++++++ + + +++n+++dg+ + + + k ++L a ee+++R 23726_FusoPortal_Gene_108 90 INENVSKVASIKIvrdnlvnlqrKISNNKNVILDGRDIGTVVFPNAKVK-IFLVAAAEERARRR 152 888888888887799999***999999**************99999999.***********996 PP >> AAA_17 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.2 0.8 5.3e-08 3.4e-05 2 49 .. 10 55 .. 10 170 .. 0.72 2 ? -2.1 0.0 6.9 4.4e+03 42 47 .. 174 179 .. 146 207 .. 0.59 Alignments for each domain: == domain 1 score: 24.2 bits; conditional E-value: 5.3e-08 E-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTSHSSHHHHCTS CS AAA_17 2 GgPGsGKgtqceklvekygfthlsaGdllreeakrgglakardemrkl 49 G+ GsGK+t+++ +++k++ft++ +G + r l +++ ++++l 23726_FusoPortal_Gene_108 10 GPAGSGKSTIAKLIAKKFNFTYIDTGAMYRMIT--LYLLENNIDFDDL 55 899***********************9988653..3333333333333 PP == domain 2 score: -2.1 bits; conditional E-value: 6.9 SHHHHC CS AAA_17 42 ardemr 47 +rd+++ 23726_FusoPortal_Gene_108 174 ERDYID 179 223332 PP >> ABC_tran ABC transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.3 2.6 2.2e-07 0.00014 13 110 .. 5 115 .. 2 202 .. 0.82 Alignments for each domain: == domain 1 score: 22.3 bits; conditional E-value: 2.2e-07 EEEEEESTTSSHHHHHHHHTTSS--...SEEEE...........EETTEEGGG.B-HHHCCHCEEEE-SS.--S-TTSBHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx...........xxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF ABC_tran 13 kvaivGenGaGKStLlkllagllkp...teGei...........lldgkdlke.qeleslrkeigvlpqe.pqlfpeltvrene 80 +vai G+ G+GKSt++kl+a++ + + G + + d+++ +e+e++ k+i qe ++ +++ v ++ 23726_FusoPortal_Gene_108 5 IVAIDGPAGSGKSTIAKLIAKKFNFtyiDTGAMyrmitlyllenN---IDFDDlKEIEKALKNINLDMQEdKFYLNGIDVSTKI 85 699******************999866678888999998754443...344445558888888888888767778888898888 PP HHTCHHHHHHCSTTGGTTCBGESTTSGGS- CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ABC_tran 81 sdeeiekalsklglkelkdtvvksspssLS 110 ++++i++ +sk+ +++ +++ + ++++S 23726_FusoPortal_Gene_108 86 REKRINENVSKVASIKIVRDNLVNLQRKIS 115 888888888888887766665555555555 PP >> ADK Adenylate kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 0.0 3.2e-06 0.002 3 33 .. 10 40 .. 8 49 .. 0.93 2 ? 0.9 0.3 0.65 4.2e+02 55 81 .. 94 124 .. 53 163 .. 0.67 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 3.2e-06 ESTTSSHHHHHHHHHHHHTSEEEEHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ADK 3 GaPgaGKGtqaeklvkkyglahlstGdllRa 33 G+ g+GK t a+ ++kk++++ + tG + R 23726_FusoPortal_Gene_108 10 GPAGSGKSTIAKLIAKKFNFTYIDTGAMYRM 40 999*************************995 PP == domain 2 score: 0.9 bits; conditional E-value: 0.65 --HHHHHHHHHHHHHCH....GTTTEEEEES CS xxxxxxxxxxxxxxxxx....xxxxxxxxxx RF ADK 55 vpdevvvklvkeeleke....dkkkgfllDG 81 v++ +k+v+++l + +++k+ +lDG 23726_FusoPortal_Gene_108 94 VSKVASIKIVRDNLVNLqrkiSNNKNVILDG 124 3334444555554433211133445555555 PP >> SKI Shikimate kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.1 0.1 3.3e-06 0.0021 2 23 .. 13 34 .. 12 40 .. 0.93 2 ? -0.9 0.0 2.3 1.5e+03 28 37 .. 158 167 .. 125 210 .. 0.59 Alignments for each domain: == domain 1 score: 18.1 bits; conditional E-value: 3.3e-06 TSSHHHHHHHHHHHHTSEEEEH CS SKI 2 GaGKstvGkllAkklglefiDl 23 G+GKst++kl+Akk ++++iD+ 23726_FusoPortal_Gene_108 13 GSGKSTIAKLIAKKFNFTYIDT 34 9********************8 PP == domain 2 score: -0.9 bits; conditional E-value: 2.3 HHHHTS-HHH CS SKI 28 ekrtgksiae 37 ek+++ + e 23726_FusoPortal_Gene_108 158 EKKVEITYDE 167 2222222222 PP >> NB-ARC NB-ARC domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.1 5.2e-06 0.0033 19 44 .. 3 28 .. 1 41 [. 0.89 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 5.2e-06 SEEEEEEESTTSSHHHHHHHHTCSCC CS NB-ARC 19 lgivalvGmgGvGKttlakqilkdds 44 iva+ G +G+GK+t+ak i k+++ 23726_FusoPortal_Gene_108 3 NIIVAIDGPAGSGKSTIAKLIAKKFN 28 679*******************9986 PP >> AAA_33 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.6 0.1 1e-05 0.0064 2 39 .. 6 43 .. 5 177 .. 0.72 Alignments for each domain: == domain 1 score: 16.6 bits; conditional E-value: 1e-05 AAA_33 2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfg 39 v + G++GsGKst a+ ++kk ++ +++ +++r+++ 23726_FusoPortal_Gene_108 6 VAIDGPAGSGKSTIAKLIAKKFNFTYIDTGAMYRMITL 43 5667***********************99996665544 PP >> AAA ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.5 0.2 6.2e-06 0.004 4 30 .. 9 35 .. 6 164 .. 0.78 Alignments for each domain: == domain 1 score: 17.5 bits; conditional E-value: 6.2e-06 ESSTTSSHHHHHHHHHHHHTHEEEEEE CS AAA 4 yGppGtGKTllakavakelgvefleis 30 Gp G GK+++ak +ak+++++++ + 23726_FusoPortal_Gene_108 9 DGPAGSGKSTIAKLIAKKFNFTYIDTG 35 59****************987755443 PP >> Thymidylate_kin Thymidylate kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.1 0.0 0.00034 0.22 1 21 [. 8 28 .. 8 40 .. 0.91 2 ? 0.3 0.0 0.72 4.6e+02 116 137 .. 67 92 .. 44 130 .. 0.56 3 ? 2.4 0.1 0.15 99 73 112 .. 110 147 .. 101 214 .. 0.70 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00034 EEESTTSSHHHHHHHHHHHHH CS Thymidylate_kin 1 iEGlDGaGKttqaellkerlk 21 i+G G+GK+t+a+l++++++ 23726_FusoPortal_Gene_108 8 IDGPAGSGKSTIAKLIAKKFN 28 89****************997 PP == domain 2 score: 0.3 bits; conditional E-value: 0.72 S..E-SEEEEEESSHHHHH..TSCCC CS Thymidylate_kin 116 l..kPdltflldvdpeval..kRlak 137 l + d+++l +d+++++ kR+++ 23726_FusoPortal_Gene_108 67 LdmQEDKFYLNGIDVSTKIreKRINE 92 22355555554444443330033333 PP == domain 3 score: 2.4 bits; conditional E-value: 0.15 HHHHHHTT-EEEEES-HHHHHHHHHTTTTTTCHHHHHHGG CS Thymidylate_kin 73 ikpalkqgktvivdRylfSslaYqgakegvdldlvlslne 112 ++++++++k vi+d +++++++ ak + lv +e 23726_FusoPortal_Gene_108 110 LQRKISNNKNVILDGRDIGTVVFPNAKV--KIFLVAAAEE 147 5778888999999999999999998754..4555554444 PP >> dNK Deoxynucleoside kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.3 7.8 0.00034 0.22 2 202 .. 7 213 .. 6 215 .. 0.53 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00034 EEEESTTSSHHHHHHHHHCC-TCEEEE-.....HHHHCCSSSS.........HHHHHHHHSHHHHHHHHHH.HHHHHHHHHHHC CS dNK 2 vveGnIgaGKstlvklLskklgvkvfeE.....pvdkwtnvqk.........nlLekfYkdpsrwsfalqt.yvllsrlkqqle 70 +++G+ g+GKst++kl++kk+++ + + + L+ + k ++ + +q ++ l+ +++ ++ 23726_FusoPortal_Gene_108 7 AIDGPAGSGKSTIAKLIAKKFNFTYIDTgamyrM------ITLyllennidfDDLKEIEKALKNINLDMQEdKFYLNGIDVSTK 84 79*******************9987765444442......33323333355555555555555555666531344555555544 PP HH....SSS-EEEEES-HHHHHHTHHHHHHHTTSS-HHHHHHHHHHHHHHHHHCCH-SEEEEEE--HHHHHHHHHHCTTCC.CT CS dNK 71 al....atkqvvvleRsiysdryiFakalaekgtlseeelkiykelldnlleelakpdlliYLkasletclerikkRgree.ek 149 + +++ +v+ i d + + ++++s+++ i+ + +d + +++ ++ i+L a e+ r ++R +e+ ek 23726_FusoPortal_Gene_108 85 IRekriNENVSKVASIKIVRDN-----LVNLQRKISNNKNVIL-DGRDIGTVVFPNAKVKIFLVAAAEE---RARRRYNEFlEK 159 4221112222233333333333.....2233344444444443.3445555566667788888776664...445555444377 PP TS-HHHHHHHHHHHHHHHTS..GGCS-EEEEETSS.-TTTHCCHHHHHHHHHHHH CS dNK 150 kieldYlekLhekyeewlkk..lnevpvlvidveeldlvaeeekredvveevkel 202 k+e+ Y e L++ e ++ +e+p + d ++l++ + edv++ + ++ 23726_FusoPortal_Gene_108 160 KVEITYDEVLKSLKERDYIDstRKESPLKKADE-AIELDTTNLTIEDVINFISKK 213 888888777766665555442234556555553.346777777777777776555 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.8 0.0 3.7e-05 0.024 7 30 .. 5 28 .. 2 153 .. 0.81 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 3.7e-05 AAA_22 7 ilvvtGesGtGKTtllrrlleqld 30 i+++ G++G+GK+t ++ ++++++ 23726_FusoPortal_Gene_108 5 IVAIDGPAGSGKSTIAKLIAKKFN 28 6789***************99984 PP >> NACHT NACHT domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 0.00012 0.08 3 24 .. 6 27 .. 4 45 .. 0.85 2 ? -1.8 0.0 3.7 2.4e+03 74 91 .. 105 126 .. 86 162 .. 0.60 3 ? -2.3 0.0 5.3 3.4e+03 122 145 .. 140 161 .. 125 174 .. 0.75 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 0.00012 NACHT 3 vilqGeaGsGKTtLlqklalaw 24 v++ G+aGsGK+t ++ +a + 23726_FusoPortal_Gene_108 6 VAIDGPAGSGKSTIAKLIAKKF 27 89**************999876 PP == domain 2 score: -1.8 bits; conditional E-value: 3.7 NACHT 74 avllelperlL....lilDglD 91 +l+ l++++ ilDg D 23726_FusoPortal_Gene_108 105 DNLVNLQRKISnnknVILDGRD 126 4555555555455555555554 PP == domain 3 score: -2.3 bits; conditional E-value: 5.3 NACHT 122 sllltvrpralrdleeqleeaivl 145 l++++ ra+r+ e le++ + 23726_FusoPortal_Gene_108 140 FLVAAAEERARRRYNEFLEKK--V 161 567777788888888888887..3 PP >> CoaE Dephospho-CoA kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.1 9.3e-05 0.06 1 36 [. 4 40 .. 4 49 .. 0.89 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 9.3e-05 EEEEEEESTTSSHHHHHHHHHH.TT-EEEEHHHHHHH CS CoaE 1 livgltGgiasGKstvanlfad.lgvpivDaDlvArq 36 +iv++ G +sGKst+a+l+a+ ++++ +D+ ++ r 23726_FusoPortal_Gene_108 4 IIVAIDGPAGSGKSTIAKLIAKkFNFTYIDTGAMYRM 40 589*****************99899**9*99877665 PP >> RNA_helicase RNA helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.1 0.0001 0.064 2 30 .. 7 33 .. 6 86 .. 0.70 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 0.0001 RNA_helicase 2 wlyGpsgeGKStlakeLakallkklklkk 30 + Gp+g GKSt+ak +ak++ ++ + 23726_FusoPortal_Gene_108 7 AIDGPAGSGKSTIAKLIAKKFNFTY--ID 33 578*************988887332..33 PP >> TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.0 7.7e-05 0.049 21 83 .. 5 65 .. 1 114 [. 0.69 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 7.7e-05 EEEEEESTTSSHHHHHHHHHHHTT--.----TTTTSEEEEEE....EEEEE-TT-SSTHHHHHC CS TsaE 21 vilLeGdLGaGKTtlvrglakalgve.evkSPTFtlveeYelekeglyHfDlYRledeeeleel 83 +++++G+ G+GK+t+++ +ak+++++ + + +++ Y le++ + Dl +e++ l+++ 23726_FusoPortal_Gene_108 5 IVAIDGPAGSGKSTIAKLIAKKFNFTyIDTGAMYRMITLYLLENN-IDFDDLKEIEKA--LKNI 65 6899*********************95556778999999976543.544445444433..3333 PP >> PRK Phosphoribulokinase / Uridine kinase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.1 0.00018 0.12 1 29 [. 5 33 .. 5 75 .. 0.73 2 ? -1.8 0.0 3.1 2e+03 34 52 .. 158 176 .. 134 210 .. 0.59 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 0.00018 PRK 1 vIgvagsSGaGkttvarklekifgrekvk 29 ++++ g+ G+Gk+t+a+ + k f+ + + 23726_FusoPortal_Gene_108 5 IVAIDGPAGSGKSTIAKLIAKKFNFTYID 33 789********************966655 PP == domain 2 score: -1.8 bits; conditional E-value: 3.1 PRK 34 egdsflrldraekdlelee 52 e ++++++d+++k+l+ ++ 23726_FusoPortal_Gene_108 158 EKKVEITYDEVLKSLKERD 176 3444444444444444444 PP >> AAA_14 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.5 0.5 7.9e-05 0.051 3 40 .. 4 36 .. 2 124 .. 0.71 2 ? -1.5 0.1 3.4 2.2e+03 68 75 .. 163 170 .. 131 210 .. 0.60 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 7.9e-05 AAA_14 3 kilvitGaRrvGKTtllkqlikellvkkesilyinldd 40 i++i G+ +GK+t++k ++k+ + yi+ 23726_FusoPortal_Gene_108 4 IIVAIDGPAGSGKSTIAKLIAKKFN-----FTYIDTGA 36 6899************988887766.....44444332 PP == domain 2 score: -1.5 bits; conditional E-value: 3.4 AAA_14 68 lflDEiqe 75 + DE+ + 23726_FusoPortal_Gene_108 163 ITYDEVLK 170 33333333 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 0.00015 0.098 19 40 .. 4 25 .. 1 40 [. 0.88 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 0.00015 AAA_30 19 rvavltGpAGtGKttalkalre 40 ++++ GpAG+GK+t+ k +++ 23726_FusoPortal_Gene_108 4 IIVAIDGPAGSGKSTIAKLIAK 25 57899***********999876 PP >> AAA_5 AAA domain (dynein-related subfamily) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 0.00027 0.17 4 27 .. 8 31 .. 5 65 .. 0.86 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 0.00027 EE--SSSSHHHHHHHGGGGBS--E CS AAA_5 4 LvGppGtgKselaerlaaalnrev 27 + Gp G+gKs++a+ +a+ +n ++ 23726_FusoPortal_Gene_108 8 IDGPAGSGKSTIAKLIAKKFNFTY 31 56****************997655 PP >> AAA_29 P-loop containing region of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 0.00031 0.2 24 38 .. 5 19 .. 1 23 [. 0.86 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00031 AAA_29 24 vtlltGpsGsGKSTl 38 ++++ Gp GsGKST+ 23726_FusoPortal_Gene_108 5 IVAIDGPAGSGKSTI 19 56899*********8 PP >> AAA_16 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 0.00046 0.29 27 48 .. 6 27 .. 4 73 .. 0.85 2 ? -1.4 0.0 3.9 2.5e+03 64 88 .. 160 184 .. 137 213 .. 0.50 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 0.00046 AAA_16 27 vllsGesGvGKsslvrellral 48 v + G++G+GKs++++ +++ + 23726_FusoPortal_Gene_108 6 VAIDGPAGSGKSTIAKLIAKKF 27 7788************999865 PP == domain 2 score: -1.4 bits; conditional E-value: 3.9 AAA_16 64 esaipysalaqalareellrqllde 88 + +i+y+ +++ l++++++ e 23726_FusoPortal_Gene_108 160 KVEITYDEVLKSLKERDYIDSTRKE 184 3334455566666554444444333 PP >> Torsin Torsin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 0.00043 0.28 54 115 .. 4 71 .. 2 75 .. 0.79 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00043 EEEEEEE-TTSSHHHHHHHHHHH...HS.TTGGGSTTEEEEE..HHHHS--GGGHHHHHHHHHHHHHH CS Torsin 54 LvlsfhGwtGtGknfvaeiiaen...ly.rdGlrsdyvkkfv..atadfPkkkkveeykeelkeqire 115 +++++ G +G+Gk+ +a++ia++ +y +G + +++ ++ +df + k++e+ ++++ ++e 23726_FusoPortal_Gene_108 4 IIVAIDGPAGSGKSTIAKLIAKKfnfTYiDTGAMYRMITLYLleNNIDFDDLKEIEKALKNINLDMQE 71 577899***************87333452469999999999833467899999999999998888876 PP >> CPT Chloramphenicol phosphotransferase-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.8 0.0 0.00095 0.61 3 34 .. 5 36 .. 3 70 .. 0.71 2 ? 0.2 0.0 0.84 5.4e+02 84 129 .. 48 92 .. 32 123 .. 0.74 3 ? -2.9 0.0 7.4 4.7e+03 153 172 .. 194 213 .. 188 215 .. 0.77 Alignments for each domain: == domain 1 score: 9.8 bits; conditional E-value: 0.00095 EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEH CS CPT 3 iilLnGgsssGKsslaralqevldepwlhlgv 34 i+ ++G + sGKs++a+ + + ++ ++++ g 23726_FusoPortal_Gene_108 5 IVAIDGPAGSGKSTIAKLIAKKFNFTYIDTGA 36 67899****************99988876653 PP == domain 2 score: 0.2 bits; conditional E-value: 0.84 -EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHH CS CPT 84 nnvivDdvilekewlvdllrrllsgldvllVGvrcplevlerRele 129 nn+ Dd+ + +++l ++ +++ +++l G+ +++++ e+R e 23726_FusoPortal_Gene_108 48 NNIDFDDLKEIEKALKNIN-LDMQEDKFYLNGIDVSTKIREKRINE 92 5666676666666555555.34557788999999999999988655 PP == domain 3 score: -2.9 bits; conditional E-value: 7.4 EEEETTSS-HHHHHHHHHTT CS CPT 153 levDtsaktpeecArairer 172 +e+Dt++ t e++ + i ++ 23726_FusoPortal_Gene_108 194 IELDTTNLTIEDVINFISKK 213 68999999988887777765 PP >> DUF87 Domain of unknown function DUF87 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.4 0.1 0.0015 0.96 26 47 .. 6 27 .. 5 34 .. 0.89 2 ? -0.2 0.1 1.3 8.2e+02 151 169 .. 66 104 .. 29 136 .. 0.49 3 ? 3.6 0.8 0.086 55 130 170 .. 151 196 .. 117 218 .. 0.51 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 0.0015 DUF87 26 lAilgsTGsGKSntvavLleel 47 +Ai g +GsGKS+ ++++ ++ 23726_FusoPortal_Gene_108 6 VAIDGPAGSGKSTIAKLIAKKF 27 588899************9875 PP == domain 2 score: -0.2 bits; conditional E-value: 1.3 DUF87 151 k....................kekeelrklknqaiarll 169 + +++ +++ +k +i+ + 23726_FusoPortal_Gene_108 66 NldmqedkfylngidvstkirEKRINENVSKVASIKIVR 104 233333333333333333221111122233333333333 PP == domain 3 score: 3.6 bits; conditional E-value: 0.086 DUF87 130 a.....keekeklssdepveklleelkkekeelrklknqaiarlld 170 + e+k ++++de +++l+e ++ ++ +++ ++a ++++ 23726_FusoPortal_Gene_108 151 RrynefLEKKVEITYDEVLKSLKERDYIDSTRKESPLKKADEAIEL 196 4444444566666666666666665553333333333333333322 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (219 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1109 (0.0663595); expected 334.2 (0.02) Passed bias filter: 426 (0.0254907); expected 334.2 (0.02) Passed Vit filter: 74 (0.00442796); expected 16.7 (0.001) Passed Fwd filter: 26 (0.00155577); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 26 [number of targets reported over threshold] # CPU time: 0.31u 0.26s 00:00:00.57 Elapsed: 00:00:00.34 # Mc/sec: 1872.47 // [ok]