# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1085.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1085 [L=580] Description: # 1189985 # 1191724 # -1 # ID=1_1085;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.289 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.9e-55 185.7 4.3 1.7e-54 184.9 4.3 1.3 1 Endonuclease_NS DNA/RNA non-specific endonuclease 5.1e-21 76.1 0.0 7.9e-21 75.5 0.0 1.3 1 Trypsin_2 Trypsin-like peptidase domain 1.9e-06 27.7 0.0 9.3e-06 25.5 0.0 1.9 1 Trypsin Trypsin 0.0022 17.5 0.0 0.0052 16.2 0.0 1.6 1 Peptidase_S39 Peptidase S39 ------ inclusion threshold ------ 0.015 15.0 0.1 0.21 11.3 0.0 2.7 3 Peptidase_S7 Peptidase S7, Flavivirus NS3 serine protease 0.042 12.4 0.0 1.8 7.0 0.0 2.3 2 Peptidase_S46 Peptidase S46 Domain annotation for each model (and alignments): >> Endonuclease_NS DNA/RNA non-specific endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 184.9 4.3 6.3e-58 1.7e-54 3 221 .. 337 554 .. 335 557 .. 0.95 Alignments for each domain: == domain 1 score: 184.9 bits; conditional E-value: 6.3e-58 HCCTTCS-TTSTTSEEEE-SSEEEEEETTTTEEEEEEEEESCGGGSS-TT--GG---B--TTS-CCSG---HHHCTTS.SSEE CS Endonuclease_NS 3 seltskgfptsgddkvlfykgfsvsynkerriplwvaenldgasvnasaaerrgpsfkadpripqlsfrtqysdyagskgldR 85 +e+ + + +t+++++vl y +fs++++k+r++++++a+n+dg + ++ +++k+dpri q+++ + ++ y ++ +ldR 23726_FusoPortal_Gene_1085 337 KEMEKDTAKTENGNYVLDYIHFSIVMKKSRGLAYFTAVNIDGTDAVKIRR--TADNWKFDPRISQNYQYG-DEVYVNN-DLDR 415 6778889999**********************************999974..888***********9998.9******.7*** PP EESS-GGG--S...SHHHHHHTTBGGGEEEE-HHHHCTHHHHHHHHHHHHHCTTS.EEEEEEEEES-ECC-EEEETTTTEE-- CS Endonuclease_NS 86 GHLaaaadfkf...steanaatfnytNivPQvagfNqgnWlrlEnlvrklvrkydrklyvvtGpvfvprllyeligknkvavP 165 GHL+++ d+++ + +an++tf++tN +PQ++++Nq++W +lE+++ +++ ++ k++v+tGpvf++++ i +k+++P 23726_FusoPortal_Gene_1085 416 GHLVRRTDPNWgknALKANEDTFYFTNSTPQHKNLNQKTWVELEDYIFRNAVLNQFKVSVFTGPVFREDDM---IYRQKYQIP 495 ***********9999999********************************9999*****************...6779***** PP SEEEEEEEEECCTTTCEECCEEEEEESSSS.....-TTS-GGGGB--HHHHHHHHT--TTT CS Endonuclease_NS 166 thfwkvilsedaddkgtlnaaafllpnepi.....aderpltayqvpvdeleeltGldffc 221 ++fwkv+++ ++d g+++a+a+l ++++ ++ +++++yqvpv+++e+ltGldf + 23726_FusoPortal_Gene_1085 496 AEFWKVVVMLKED--GNISATAYLQTQKNMienleFAYGEYKTYQVPVRNIEKLTGLDFGN 554 ************8..89**********9999****************************76 PP >> Trypsin_2 Trypsin-like peptidase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 75.5 0.0 2.8e-24 7.9e-21 1 151 [] 98 249 .. 98 249 .. 0.91 Alignments for each domain: == domain 1 score: 75.5 bits; conditional E-value: 2.8e-24 Trypsin_2 1 GsGfvvgsdglilTnaHvvdsadgaav.......laekkkveeagadgrevpakvvaadpelDlAllkv.....asderaglp 71 G+Gf+v ++ ilTn+Hv++s + a+ + ++++ ++ + r +p + + +d lD++l+ + ++ +++ 23726_FusoPortal_Gene_1085 98 GTGFLVAPNI-ILTNNHVINSYEVASNsiaefnyQDDENFMPCPTYNFRLNPQTFFITDVKLDFTLVALnenvtNQKHLEDFG 179 9*********.********9999999966666666667777777778888888888888899***********99999***** PP Trypsin_2 72 plplgpse.alrggepvyvvGhplggeksesvssGivsgvvegsesaasgegesvlqtdaatspGsSGGplfdsdGrvvGl 151 l++ ++e ++ ++e v +++hp+gg+ks ++ +++vsg++e +++++ ++t pGsSG+p+f++++++v+l 23726_FusoPortal_Gene_1085 180 YLKMTQKEgSILPEEYVSIIQHPKGGPKSVTLRENKVSGLKE-----------NFIHYLTDTEPGSSGSPVFNDQWTLVAL 249 ***999777999999***************************...........***99999999***************97 PP >> Trypsin Trypsin # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.5 0.0 3.3e-09 9.3e-06 27 198 .. 98 252 .. 80 262 .. 0.73 Alignments for each domain: == domain 1 score: 25.5 bits; conditional E-value: 3.3e-09 EEEEEEETTEEEEEGGGHTTGGGEEEEESE.SBTTSCTTTCEEEEEEEEEEETTEBTTTT.....TTTEEEEEESSSSTTBSS CS Trypsin 27 CgGslisenwvlTAaHCvsnasdvkvvlge.hnlkksegkeqklkvekvivhpnynpstl.....dnDiallklkepvklgdt 103 +G+l+ +n++lT++H++++ ++v + + +++ +++ e+ ++ + + + np+t+ + D+ l+ l+e+v+ +++ 23726_FusoPortal_Gene_1085 98 GTGFLVAPNIILTNNHVINS---YEVASNSiAEFNYQDD-ENFMPCPTYNF--RLNPQTFfitdvKLDFTLVALNENVTNQKH 174 48*****************8...8886666556666666.67777777555..6667765678889***************** PP BHCCBBCS.TTHTT.STTTEEEEEESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSE CS Trypsin 104 vrpiclpa.asssl.pvgttclvsGwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGP 184 + + + + + ++ ++ + +vs + ++k ks tl+e +v+ ++en++ + d+++G SG+P 23726_FusoPortal_Gene_1085 175 LEDFGYLKmT-QKEgSILPEEYVSIIQHPKGGPKSVTLRENKVSG-------------LKENFIHYLT-----DTEPGSSGSP 238 *****99942.3222333344666666653333445555444444.............6788999899.....9999999999 PP EEETTTEEEEEEEE CS Trypsin 185 lvcsdgelvGivsw 198 +++++ +lv ++ 23726_FusoPortal_Gene_1085 239 VFNDQWTLVALHHS 252 99998878777655 PP >> Peptidase_S39 Peptidase S39 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.0 1.9e-06 0.0052 126 170 .. 212 258 .. 200 266 .. 0.85 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 1.9e-06 Peptidase_S39 126 ssakivgsegkfvsvlsntkpghsgtpyfsgk.qvvgvhkGs.akes 170 ++ k+ g +++f+ l +t+pg sg+p f+ + ++v+ h + ++ + 23726_FusoPortal_Gene_1085 212 RENKVSGLKENFIHYLTDTEPGSSGSPVFNDQwTLVALHHSGvPNPE 258 56789999*****************************9976546555 PP >> Peptidase_S7 Peptidase S7, Flavivirus NS3 serine protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 7.7e-05 0.21 91 117 .. 228 254 .. 221 262 .. 0.85 2 ? -0.1 0.0 0.26 7.2e+02 57 79 .. 260 282 .. 251 286 .. 0.89 3 ? -2.3 0.0 1.2 3.4e+03 3 34 .. 426 458 .. 425 470 .. 0.80 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 7.7e-05 ----TT-TT-EEE-TTS-EEEECEEEE CS Peptidase_S7 91 lnlssGsSGSlvlnqnkqivgiYfatv 117 ++ ++GsSGS+v+n++ v + +v 23726_FusoPortal_Gene_1085 228 TDTEPGSSGSPVFNDQWTLVALHHSGV 254 67899**********999998876665 PP == domain 2 score: -0.1 bits; conditional E-value: 0.26 TTTTEEEESSS--------T--E CS Peptidase_S7 57 vkedlvkyggslklqgkylgeey 79 ++e++ + g++ ++ +yl+++y 23726_FusoPortal_Gene_1085 260 KDEWIANEGILISAIVNYLAKKY 282 579*******************9 PP == domain 3 score: -2.3 bits; conditional E-value: 1.2 XXXEEEEEEEEETT.CEEEEEEEEEETTEEEEE CS Peptidase_S7 3 ledgilrikqasll.grsqrgvkvlqegvfvtl 34 +++++l+ ++++++ ++s + k+l+++ v l 23726_FusoPortal_Gene_1085 426 WGKNALKANEDTFYfTNSTPQHKNLNQKTWVEL 458 677889999999999999989999999976655 PP >> Peptidase_S46 Peptidase S46 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.0 0.013 36 36 82 .. 88 131 .. 70 137 .. 0.73 2 ? 7.0 0.0 0.00063 1.8 629 651 .. 228 250 .. 182 257 .. 0.80 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.013 Peptidase_S46 36 rsskdAvvsflggCtasfVSpeGLvlTNHHCayg.aiqqnssaekdyl 82 r s +vv g+ t+ +V+p+ +lTN H++ + +++ns ae +y 23726_FusoPortal_Gene_1085 88 RDS-RGVVV--GYGTGFLVAPN-IILTNNHVINSyEVASNSIAEFNYQ 131 444.45555..9*********9.9999999987625999999999985 PP == domain 2 score: 7.0 bits; conditional E-value: 0.00063 Peptidase_S46 629 nDitGGNSGSPvlnkkgelvGla 651 +D+ G SGSPv+n++ +lv l 23726_FusoPortal_Gene_1085 228 TDTEPGSSGSPVFNDQWTLVALH 250 69999***********9999775 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (580 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 667 (0.0399114); expected 334.2 (0.02) Passed bias filter: 415 (0.0248325); expected 334.2 (0.02) Passed Vit filter: 37 (0.00221398); expected 16.7 (0.001) Passed Fwd filter: 6 (0.000359023); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.35 # Mc/sec: 4817.37 // [ok]