# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1091.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1091 [L=371] Description: # 1198441 # 1199553 # -1 # ID=1_1091;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.283 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-20 72.5 2.1 2.5e-20 72.5 0.6 1.7 2 HlyD_D23 Barrel-sandwich domain of CusB or HlyD membr 1.5e-15 57.7 0.4 2.6e-12 47.3 0.2 2.6 2 HlyD_3 HlyD family secretion protein 8.3e-09 35.1 0.7 5.9e-06 25.9 0.1 3.0 2 Biotin_lipoyl_2 Biotin-lipoyl like 2.4e-06 27.4 9.0 4.3e-06 26.6 9.0 1.3 1 OEP Outer membrane efflux protein 1.2e-05 24.9 3.4 0.0074 16.0 0.1 3.4 4 Biotin_lipoyl Biotin-requiring enzyme ------ inclusion threshold ------ 0.019 14.5 0.4 0.68 9.5 0.1 2.6 2 PYNP_C Pyrimidine nucleoside phosphorylase C-termin 0.043 14.0 4.7 0.033 14.4 3.0 1.8 1 DUF4375 Domain of unknown function (DUF4375) 0.12 12.5 0.0 0.3 11.2 0.0 1.6 1 NOB1_Zn_bind Nin one binding (NOB1) Zn-ribbon like Domain annotation for each model (and alignments): >> HlyD_D23 Barrel-sandwich domain of CusB or HlyD membrane-fusion # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.6 0.2 0.00011 0.22 77 143 .. 33 106 .. 16 108 .. 0.75 2 ! 72.5 0.6 1.2e-23 2.5e-20 25 213 .. 77 283 .. 68 284 .. 0.86 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00011 .....XXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS HlyD_D23 77 e....lleaarerLrllgvseeqiaelektgkv...qktvtvkapisGvVtelnvreGqyvqpgdtlftiadls 143 e + ++ + ++ v+ +++++l ++ v +v++++ G+V + +G+yv++g+ +++++d + 23726_FusoPortal_Gene_1091 33 EttttEEQKVVKSVEVAAVTTREMSKLFESSAVwepLAKVDFSTDKGGTVKTIYKKNGEYVKKGEVIVKLSDAQ 106 13344777777888888899999999888876521156899****************************99976 PP == domain 2 score: 72.5 bits; conditional E-value: 1.2e-23 XXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXX.......................XXXX CS HlyD_D23 25 rveGwveklyvnatgdkVkkGqpLaely....spelvaaqeeyllalkakkklkkke......................llea 81 G v+++y + g+ VkkG+ +++l ++++a+++y +a ++ + ++++ + + 23726_FusoPortal_Gene_1091 77 DKGGTVKTIYKK-NGEYVKKGEVIVKLSdaqtEADFLQAKANYQSATSNYNIARNNYqkfktlydkqlisylefsnyqaSYTS 158 55799*****99.*************972222457888888888888866666444478889999999999998877666777 PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS HlyD_D23 82 arerLrllgvseeqiaelektgkvqktvtvkapisGvVtelnvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqk 164 a+ L++ + + + ++ +++ +a+isGvV +l + eG+ + +++ lfti + +++ ++ + + +++vk g++ 23726_FusoPortal_Gene_1091 159 AQGNLEVAKAT------YMNAQNSYSKLGARAEISGVVGNLFIKEGNDIAAKEVLFTILNDKQMQSYVGITPEAISKVKLGNE 235 77777776644......55667777889******************************************************* PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS HlyD_D23 165 vevtvealpgktfeGkvdyiyptvdpeTRtvkvRieldNpdgkLkpgmf 213 ++v+++al++ ++++k++ ++p d++T+ +kv + ldNpdg++k gmf 23726_FusoPortal_Gene_1091 236 INVKIDALAK-EYKAKITELNPIADSTTKNFKVKLALDNPDGEIKDGMF 283 ********97.9************************************9 PP >> HlyD_3 HlyD family secretion protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.8 0.0 0.0024 5.1 7 33 .. 79 105 .. 75 131 .. 0.82 2 ! 47.3 0.2 1.3e-15 2.6e-12 3 97 .. 183 275 .. 182 282 .. 0.94 Alignments for each domain: == domain 1 score: 7.8 bits; conditional E-value: 0.0024 HlyD_3 7 dGvvvelnveegevvqagdelleiipp 33 +G+v+ + ++ge+v +g++++++ + 23726_FusoPortal_Gene_1091 79 GGTVKTIYKKNGEYVKKGEVIVKLSDA 105 69*********************9984 PP == domain 2 score: 47.3 bits; conditional E-value: 1.3e-15 HlyD_3 3 rApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktg 85 rA ++Gvv l ++eg+ ++a ++l++i+++++++ ++ + +++++++k g ++++k+d +++k+ki+++ p +d++t 23726_FusoPortal_Gene_1091 183 RAEISGVVGNLFIKEGNDIAAKEVLFTILNDKQMQSYVGITPEAISKVK-LGNEINVKID-ALAKEYKAKITELNPIADSTTK 263 89**********************************************5.*********8.7778****************** PP HlyD_3 86 aykvevslenpe 97 ++kv+++l+np+ 23726_FusoPortal_Gene_1091 264 NFKVKLALDNPD 275 **********94 PP >> Biotin_lipoyl_2 Biotin-lipoyl like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.9 0.1 2.8e-09 5.9e-06 5 48 .. 74 117 .. 67 119 .. 0.90 2 ! 6.1 0.0 0.0042 8.9 7 33 .. 184 210 .. 183 215 .. 0.92 Alignments for each domain: == domain 1 score: 25.9 bits; conditional E-value: 2.8e-09 Biotin_lipoyl_2 5 IappvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaq 48 + + G+V++++ k G +Vk+G v++ l + ++++ qa+a+ 23726_FusoPortal_Gene_1091 74 FSTDKGGTVKTIYKKNGEYVKKGEVIVKLSDAQTEADFLQAKAN 117 5667789****************************8888**998 PP == domain 2 score: 6.1 bits; conditional E-value: 0.0042 Biotin_lipoyl_2 7 ppvsGrVaqlnVkdGqrVkaGdvLael 33 +++sG+V l++k+G + a vL+++ 23726_FusoPortal_Gene_1091 184 AEISGVVGNLFIKEGNDIAAKEVLFTI 210 789***************999999998 PP >> OEP Outer membrane efflux protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.6 9.0 2.1e-09 4.3e-06 111 186 .. 105 180 .. 99 181 .. 0.94 Alignments for each domain: == domain 1 score: 26.6 bits; conditional E-value: 2.1e-09 OEP 111 aqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyl 186 aq+ +++l+ak++++ a +++ a+ +++ +++y++ lis+l+ ++q+++ +a+ +l+ a++ + +a++ +++l 23726_FusoPortal_Gene_1091 105 AQTEADFLQAKANYQSATSNYNIARNNYQKFKTLYDKQLISYLEFSNYQASYTSAQGNLEVAKATYMNAQNSYSKL 180 78999*****************************************************************988765 PP >> Biotin_lipoyl Biotin-requiring enzyme # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.1 3.5e-06 0.0074 43 73 .] 72 102 .. 70 102 .. 0.91 2 ! 7.7 0.0 0.0014 3 50 73 .] 187 210 .. 180 218 .. 0.58 3 ? -1.6 0.0 1.1 2.3e+03 49 63 .. 316 330 .. 309 337 .. 0.84 4 ? -2.2 0.1 1.7 3.5e+03 16 27 .. 337 348 .. 321 350 .. 0.69 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 3.5e-06 EEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS Biotin_lipoyl 43 meieapkaGvvkeilvkeGdtvevgdllaki 73 ++++ +k G+vk i++k+G+ v+ g++++k+ 23726_FusoPortal_Gene_1091 72 VDFSTDKGGTVKTIYKKNGEYVKKGEVIVKL 102 67888999********************997 PP == domain 2 score: 7.7 bits; conditional E-value: 0.0014 SEEEEEESSTTTEEE-TTCEEEEE CS Biotin_lipoyl 50 aGvvkeilvkeGdtvevgdllaki 73 +Gvv + +keG+ + + ++l++i 23726_FusoPortal_Gene_1091 187 SGVVGNLFIKEGNDIAAKEVLFTI 210 555555555555555555555544 PP == domain 3 score: -1.6 bits; conditional E-value: 1.1 SSEEEEEESSTTTEE CS Biotin_lipoyl 49 kaGvvkeilvkeGdt 63 ++G+ k+i v++G+t 23726_FusoPortal_Gene_1091 316 EDGKAKQIEVQVGAT 330 689999999999976 PP == domain 4 score: -2.2 bits; conditional E-value: 1.7 ECSESSSTTCEE CS Biotin_lipoyl 16 vvevlvkvGdkV 27 + + +k+Gdk+ 23726_FusoPortal_Gene_1091 337 ISSPEIKEGDKI 348 445556666665 PP >> PYNP_C Pyrimidine nucleoside phosphorylase C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.5 0.1 0.00032 0.68 36 58 .. 85 107 .. 83 123 .. 0.73 2 ? 2.3 0.0 0.059 1.2e+02 35 59 .. 192 216 .. 179 236 .. 0.85 Alignments for each domain: == domain 1 score: 9.5 bits; conditional E-value: 0.00032 ES--TT-EEBTTSEEEEEEESSS CS PYNP_C 36 lhkklGdkVkkGeplatiYanke 58 + kk+G+ VkkGe+++ + + 23726_FusoPortal_Gene_1091 85 IYKKNGEYVKKGEVIVKLSDAQT 107 679*************9864444 PP == domain 2 score: 2.3 bits; conditional E-value: 0.059 EES--TT-EEBTTSEEEEEEESSSC CS PYNP_C 35 elhkklGdkVkkGeplatiYankee 59 l++k G+ + + e+l+ti +k+ 23726_FusoPortal_Gene_1091 192 NLFIKEGNDIAAKEVLFTILNDKQM 216 478999*************888775 PP >> DUF4375 Domain of unknown function (DUF4375) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.4 3.0 1.6e-05 0.033 23 115 .. 78 173 .. 56 176 .. 0.88 Alignments for each domain: == domain 1 score: 14.4 bits; conditional E-value: 1.6e-05 HHHHHHHHHCT-HHHHCCHHHHHHCTT--HHHHHHHHHHH.HHHHHHHHHHHHHHTT-HHHHHHH....-GGGHHHHHHHHHH CS DUF4375 23 nGGfvqlfqnssgefinealkalrliGaeelakllekakk.lykkgkeelereerdeelealyeee...eeefdelDdefyey 101 GG v ++ + ge++++ ++l +a++ a+ l+ ++ +++ ++ r++ ++ +++ly+++ + ef ++ + + 23726_FusoPortal_Gene_1091 78 KGGTVKTIYKKNGEYVKKGEVIVKLSDAQTEADFLQAKANyQSATSNYNIARNNYQK-FKTLYDKQlisYLEFSNYQASYTSA 159 6**********************************9888834445666666666655.************************* PP HHHHHHHHHHHHHC CS DUF4375 102 eeeltellaeYvde 115 + +l+ + a Y+++ 23726_FusoPortal_Gene_1091 160 QGNLEVAKATYMNA 173 ***********875 PP >> NOB1_Zn_bind Nin one binding (NOB1) Zn-ribbon like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 0.00014 0.3 17 62 .. 52 97 .. 45 102 .. 0.93 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00014 NOB1_Zn_bind 17 vtkdmtkkFCpkCGnktLkrvavsvdengelklhlkknfqlnlrGt 62 +t++m+k F ++ + L +v s+d+ g++k ++kkn ++ ++G+ 23726_FusoPortal_Gene_1091 52 TTREMSKLFESSAVWEPLAKVDFSTDKGGTVKTIYKKNGEYVKKGE 97 67899****999999*************************999997 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (371 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1462 (0.087482); expected 334.2 (0.02) Passed bias filter: 485 (0.0290211); expected 334.2 (0.02) Passed Vit filter: 39 (0.00233365); expected 16.7 (0.001) Passed Fwd filter: 8 (0.000478698); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.33 # Mc/sec: 3268.21 // [ok]