# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1094.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1094 [L=579] Description: # 1201735 # 1203471 # 1 # ID=1_1094;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.253 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.7e-64 215.7 5.1 7.5e-39 133.0 0.1 2.4 2 Peptidase_S49 Peptidase family S49 3e-06 26.4 1.3 6.6e-06 25.2 0.1 2.0 2 SDH_sah Serine dehydrogenase proteinase 0.00036 20.4 0.2 0.02 14.7 0.0 2.4 2 CLP_protease Clp protease 0.0033 17.9 2.7 0.13 12.8 0.2 2.8 2 ATE_C Arginine-tRNA-protein transferase, C terminus ------ inclusion threshold ------ 8.9 6.5 9.2 0.22 11.6 0.8 2.7 3 DUF3213 Protein of unknown function (DUF3213) Domain annotation for each model (and alignments): >> Peptidase_S49 Peptidase family S49 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 84.1 1.2 2.7e-27 8.9e-24 3 145 .. 126 274 .. 124 282 .. 0.90 2 ! 133.0 0.1 2.3e-42 7.5e-39 3 152 .. 373 521 .. 371 523 .. 0.93 Alignments for each domain: == domain 1 score: 84.1 bits; conditional E-value: 2.7e-27 HHTT--EEEEEEEEEETHHHHHHTTSSEEEE..-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCC..CTTSS-- CS Peptidase_S49 3 kkakkPvvasaenvaaSggYylasaadkiva..npstivgsiGvitqllnlenlldklgvevqvvkaGeyksav..slrrelt 81 ++a+k+++a++env Yylas a++i++ + st v + + ++++ ++l+dk gv+++++++G yks + ++ ++ 23726_FusoPortal_Gene_1094 126 RAANKKIIAYFENVGR-KNYYLASYANEIYMpsANSTNVNIYPYFKENFYIKGLADKFGVKFNIIHVGDYKSYMenLASNTMS 207 7899************.*************933457889999********************************9889999** PP HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEH.HHH..HHTTSSSEETSHHHHHH CS Peptidase_S49 82 eeereilqrlldetyqqFvqtVaknRnlsveqvdkiAegrvltg.qqA..lklgLvdelgtvddava 145 +e++e r ld+ y++F+++V+ nR+++ e++dki ++ l + + A +++L+d+ ++d++++ 23726_FusoPortal_Gene_1094 208 KEAKEDTVRVLDKNYNNFLDVVSLNRKINREDLDKIIKDGELVAaSSAdlMNNNLIDKYVYWDNVIS 274 ************************************999666551455335799**********997 PP == domain 2 score: 133.0 bits; conditional E-value: 2.3e-42 HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--HHHH CS Peptidase_S49 3 kkakkPvvasaenvaaSggYylasaadkivanpstivgsiGvitqllnlenlldklgvevqvvkaGeyksavslrrelteeer 85 ++++kPv++s+++vaaSggYy+++ a ki+++ +ti+gsiGv+ l+++++l+ gv+++ ++ Gey + + + +te++ 23726_FusoPortal_Gene_1094 373 LAEEKPVYVSMSSVAASGGYYISTNAHKIFVDRNTITGSIGVVSILPDFSKLITDNGVNIEKISDGEYSDL-YSADSFTEKKY 454 6799******************************************************************9.66677777777 PP HHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCH CS Peptidase_S49 86 eilqrlldetyqqFvqtVaknRnlsveqvdkiAegrvltgqqAlklgLvdelgtvddavaeleelak 152 +++ ++ ++y++F+++V+k+R +++e+++ iAegr++tg++A+k gL+de+g++++++ ++e+ + 23726_FusoPortal_Gene_1094 455 NKIYNSNLKVYEDFLSVVSKGRRIDKEKLKTIAEGRIWTGDEAIKIGLADEIGGLNETIYAIAEDNN 521 777777779************************************************9999888766 PP >> SDH_sah Serine dehydrogenase proteinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.9 0.1 0.18 6e+02 7 30 .. 19 42 .. 14 85 .. 0.77 2 ! 25.2 0.1 2e-09 6.6e-06 82 236 .. 337 502 .. 326 516 .. 0.67 Alignments for each domain: == domain 1 score: -0.9 bits; conditional E-value: 0.18 SDH_sah 7 lsslssllwfllflylllapqlkr 30 ls +++l+ fl+++ ++++ +k 23726_FusoPortal_Gene_1094 19 LSFFIKLFLFLFVVGIIISAAIKS 42 666788999999999999888775 PP == domain 2 score: 25.2 bits; conditional E-value: 2e-09 SDH_sah 82 lrairltpkdkpidliihtpGGlvlaatqiakalkehkak..trvivphyamsGGtlialaadeiildenavlGpvdpqlgqy 162 l + k k + l + +pGG +l+++ iak +ke + + v + a sGG i+ a +i +d+n++ G + ++ + 23726_FusoPortal_Gene_1094 337 LNIAKENNKVKAVVLRVNSPGGSALTSDIIAKKVKELAEEkpVYVSMSSVAASGGYYISTNAHKIFVDRNTITGSIG-VVSIL 418 55556667778899999*****************99766511556667899***********************986.46777 PP SDH_sah 163 paasilkvvekkeakdidd...ktlilad.iakkaikqveefvyellkdky.....deekakeiakklteGr.wthdypltve 235 p s l + + + ++i+d l ad ++k +++ + +++ d + + ke k+++eGr wt d + + 23726_FusoPortal_Gene_1094 419 PDFSKLITDNGVNIEKISDgeySDLYSADsFTEKKYNKIYNSNLKVYEDFLsvvskGRRIDKEKLKTIAEGRiWTGDEAIKIG 501 88887777777777777773223466666456777777766544444443310000222233333445566556766666665 PP SDH_sah 236 e 236 23726_FusoPortal_Gene_1094 502 L 502 5 PP >> CLP_protease Clp protease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.0 5.9e-06 0.02 32 97 .. 332 399 .. 313 408 .. 0.83 2 ? 3.1 0.0 0.021 69 141 179 .. 470 507 .. 455 510 .. 0.72 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 5.9e-06 HHHHHHHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHS..SS-EEEEEEEEEETHHHHHHHTS- CS CLP_protease 32 kiiaqLllLeaedpdkdillyinspGGsvtaglaIydtmqyi..kpdvsticlGlaaSmgalllaage 97 + +++L +++++++ k ++l +nspGGs + I+ ++ + + +v++ +aaS g + + ++ 23726_FusoPortal_Gene_1094 332 ETLEKLNIAKENNKVKAVVLRVNSPGGSALTSDIIAKKVKELaeEKPVYVSMSSVAASGGYYISTNAH 399 5678999999*****************************99865566777777999999998887766 PP == domain 2 score: 3.1 bits; conditional E-value: 0.021 HHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSEE- CS CLP_protease 141 eilakhtgqslekiekdldrdtflsaeeAveyGLidevi 179 ++++k + ek+++ ++ + +eA++ GL+de+ 23726_FusoPortal_Gene_1094 470 SVVSKGRRIDKEKLKTI-AEGRIWTGDEAIKIGLADEIG 507 56666666666776554.44566689***********96 PP >> ATE_C Arginine-tRNA-protein transferase, C terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.8 0.2 3.8e-05 0.13 6 85 .. 194 274 .. 191 306 .. 0.68 2 ? 4.1 0.2 0.019 62 4 35 .. 538 569 .. 535 574 .. 0.91 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 3.8e-05 ATE_C 6 ykkYqkavhgdkeeksseesfarflvdsplseeeisakekklgs.yhqeyrldgkLvavgvvDvlpeglSsvYffydpdya 85 yk+Y+++ +++ +k ++e+ r l ++ + ++ + ++k++ + ++ dg+Lva + D++++ l Y+++d ++ 23726_FusoPortal_Gene_1094 194 YKSYMENLASNTMSKEAKEDTVRVLDKNYNNFLDVVSLNRKINReDLDKIIKDGELVAASSADLMNNNLIDKYVYWDNVIS 274 666776666444444444435555555554444445555555540455677788***********************8766 PP == domain 2 score: 4.1 bits; conditional E-value: 0.019 ATE_C 4 eLykkYqkavhgdkeeksseesfarflvdspl 35 ++ykkY + ++ + ++ ++e+ f+++l ++p+ 23726_FusoPortal_Gene_1094 538 NIYKKYSRYIKMNAKDLVKEKIFKDYLYNKPV 569 68***************************996 PP >> DUF3213 Protein of unknown function (DUF3213) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.8 6.6e-05 0.22 21 84 .] 210 273 .. 199 273 .. 0.88 2 ? -1.8 0.2 1 3.5e+03 36 53 .. 318 335 .. 281 345 .. 0.49 3 ? -2.5 0.1 1.7 5.7e+03 23 53 .. 455 485 .. 449 488 .. 0.71 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 6.6e-05 TTTTB------TTSS--EEE--B-S-SHHHHHHHT...TT-SS-------SS--XXXXXXXXXX CS DUF3213 21 kdeevyrvfingyakngfvifdeeklpkeelleklkelkpevieekeltlqelieeslsWnnvl 84 +e+ rv+ y v+ + k+++e+l + +k+ + + +l +li++ + W+nv+ 23726_FusoPortal_Gene_1094 210 AKEDTVRVLDKNYNNFLDVVSLNRKINREDLDKIIKDGELVAASSADLMNNNLIDKYVYWDNVI 273 56677899999999999******************876666668899***************97 PP == domain 2 score: -1.8 bits; conditional E-value: 1 --EEE--B-S-SHHHHHH CS DUF3213 36 ngfvifdeeklpkeelle 53 +++v ee ++ e le 23726_FusoPortal_Gene_1094 318 QTEVFSGEENINVSETLE 335 233333444444444444 PP == domain 3 score: -2.5 bits; conditional E-value: 1.7 TTB------TTSS--EEE--B-S-SHHHHHH CS DUF3213 23 eevyrvfingyakngfvifdeeklpkeelle 53 +++y + y v+ +++ke+l+ 23726_FusoPortal_Gene_1094 455 NKIYNSNLKVYEDFLSVVSKGRRIDKEKLKT 485 5566666677777777888888888888875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (579 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 975 (0.0583413); expected 334.2 (0.02) Passed bias filter: 421 (0.0251915); expected 334.2 (0.02) Passed Vit filter: 36 (0.00215414); expected 16.7 (0.001) Passed Fwd filter: 5 (0.000299186); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.33 # Mc/sec: 5100.52 // [ok]