# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1102.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1102 [L=274] Description: # 1209667 # 1210488 # 1 # ID=1_1102;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.266 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-99 332.1 1.5 2.3e-99 331.9 1.5 1.0 1 CbiK Cobalt chelatase (CbiK) 1.4e-06 28.4 0.0 1.5e-05 25.1 0.0 2.2 2 CbiX CbiX Domain annotation for each model (and alignments): >> CbiK Cobalt chelatase (CbiK) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 331.9 1.5 2.8e-103 2.3e-99 1 262 [] 4 255 .. 4 255 .. 0.99 Alignments for each domain: == domain 1 score: 331.9 bits; conditional E-value: 2.8e-103 EEEEEEE---S-HHHHHHHHHHHHHHHHHC-TTSEEEEEES-HHHHHHHHHHH------HHHHHHHHHHCT--EEEEEE--SC CS CbiK 1 kaillvsFGtsykdarektiekiekkvaaefpdyevfraftSsiiikklkerdeievdtpeealeklkeegykevivqplhii 83 ka+++v+FGt+++d++e+ti+k++kk+a+ef+dy+ f+a+tS+i++k+lk+r e+ ++tp ++l++l+++gy+e+ivq++h+i 23726_FusoPortal_Gene_1102 4 KALFMVHFGTTHNDTKELTIDKMNKKFADEFKDYDSFTAYTSRIVLKRLKDRGEV-FSTPIRVLNSLADQGYEELIVQTSHVI 85 8*****************************************************9.*************************** PP SSHHHHHHHHHHHHHGGGSSEEEEE--SCS......SHHHHHHHHHHHHTTS----TTEEEEEEE---SCHHHHHHHHHHHHH CS CbiK 84 pGeeyeklkreVkkfkkkfekiklgrPlldykGvedsteDykevvealkdeierarkdealvfvgHGtehesnavyaeldkvl 166 pG eye+l+reV++f++kf+++k+g+Pll+y +Dyk++v+al+de+ +++k+ealv+v+HGt+++ +++ya++++v+ 23726_FusoPortal_Gene_1102 86 PGIEYENLVREVNSFSNKFKSVKIGKPLLYY------IDDYKKCVKALADEYVPKNKKEALVLVCHGTDSPLATSYAMIEYVF 162 ******************************8......********************************************** PP HHCT-S.EEEEETTSSS-HHHHHHHHHHHT--EEEEEE-SSS--HHHHCCCCSSSTTSHHHHHHHTT--E.EE----GGGSHH CS CbiK 167 kekdfkqvvvgtvegyPeveevieelkkkgikevkliPlmlvAGdHaknDmasdeedswkealeaaGikv.eiilkgLGeiee 248 +e+++++v+v+++++yP +++++++l+k+gi+ev+l+P+m+vAG+HaknDma ++ke+le++G+kv ++ilkgLGe+++ 23726_FusoPortal_Gene_1102 163 DEYGYDNVFVVCTKAYPLMDTLLKKLRKNGIEEVRLAPFMFVAGEHAKNDMAV----TYKEELEKNGFKVnQVILKGLGEFDA 241 ***************************************************99....9************889********** PP HHHHHHHHHHHHH. CS CbiK 249 irsifikhikeaie 262 i++if++h+k+aie 23726_FusoPortal_Gene_1102 242 IQNIFLDHLKSAIE 255 ***********996 PP >> CbiX CbiX # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.9 0.0 0.063 5.3e+02 43 92 .. 65 110 .. 61 129 .. 0.83 2 ! 25.1 0.0 1.8e-09 1.5e-05 17 105 .. 159 246 .. 145 248 .. 0.83 Alignments for each domain: == domain 1 score: 0.9 bits; conditional E-value: 0.063 SSHHHHC-SBSEEEEEEESSSSSHHHHTHHHHHCT--SSSS-TTEEEEE- CS CbiX 43 alrelaeqgvkrivvvPlflfaGvhvkeDIpeeleeaeeahpkdveieyt 92 +l++la+qg+++ +v + +G+ +++ + +e++ + ++++ ++ ++ 23726_FusoPortal_Gene_1102 65 VLNSLADQGYEELIVQTSHVIPGIEYEN-LVREVNSFSNKFK---SVKIG 110 6789999*****9999988889988888.8888888888888...44444 PP == domain 2 score: 25.1 bits; conditional E-value: 1.8e-09 HHHHHHCCSCCCEECESCCCECCSCCSSHHHHC-SBSEEEEEEESSSSSHHHHTHHHHHCT--SSSS-TTEEEEE---CCCSC CS CbiX 17 eelrekgpfkpvelgfleleepsleealrelaeqgvkrivvvPlflfaGvhvkeDIpeeleeaeeahpkdveieytepLGthp 99 e++ + +++ v++ + + p +++ l++l+++g++++ + P+++ aG h+k+D+ +++e+ e+++ +v+ ++ + LG+ + 23726_FusoPortal_Gene_1102 159 EYVFDEYGYDNVFVVC-TKAYPLMDTLLKKLRKNGIEEVRLAPFMFVAGEHAKNDMAVTYKEELEKNGFKVNQVILKGLGEFD 240 5555555545555554.567899****************************************9999999***********99 PP CHHHHH CS CbiX 100 lvaevl 105 ++++++ 23726_FusoPortal_Gene_1102 241 AIQNIF 246 999987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (274 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 671 (0.0401508); expected 334.2 (0.02) Passed bias filter: 437 (0.0261489); expected 334.2 (0.02) Passed Vit filter: 38 (0.00227382); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.26u 0.24s 00:00:00.50 Elapsed: 00:00:00.32 # Mc/sec: 2489.15 // [ok]