# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_111.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_111 [L=286] Description: # 131634 # 132491 # -1 # ID=1_111;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.291 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.8e-71 238.9 0.0 7e-71 238.7 0.0 1.0 1 HSP33 Hsp33 protein ------ inclusion threshold ------ 0.17 11.8 2.6 6.5 6.7 0.0 2.9 3 zf-C2HC5 Putative zinc finger motif, C2HC5-type Domain annotation for each model (and alignments): >> HSP33 Hsp33 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 238.7 0.0 8.4e-75 7e-71 8 267 .] 9 275 .. 3 275 .. 0.92 Alignments for each domain: == domain 1 score: 238.7 bits; conditional E-value: 8.4e-75 ETTTTEEEEEEE-HHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHCCS-.T-EEEEEEEESSTT-EEEEEEETTSEEEEEES-T CS HSP33 8 ledgdvRgrlvrltelveealkrhdlppavtallgealaaaallastlkfegrltlqikgdgplgllvaeadsdgevRgyarnp 91 + +++R++++++t++++eal++h++++ +++g+++++a+l+++tlk+e++lt+++++dg ++ +v+++d++g+++gy+ n+ 23726_FusoPortal_Gene_111 9 S--KNARFFVADTTDVIQEALDIHKYDEYSMKIFGKFCTLASLMGATLKGEDKLTIRTDTDGYIKNIVVTSDANGNIKGYLVNT 90 4..467****************************************************************************99 PP T-.--.HH-SCEEEEEEE.TC..EEEEEEE-SSSSSHHHHHHHHHHCC-S-EEEEEEEEEETS.CEEEEEEEEEEESTTTSCCH CS HSP33 92 av.elpavgkGvlavtkdqkegepyqGivelvsgeiaedleaYfaqSEQiptavalavlvdkr.svkaagGlllQlLPgadeel 173 ++ +++ +gkG+++++kd++ +epy i ++ ++++ +d++a+f +SEQip++++lav+ +++ ++ +ag++++QlLP+ade+ 23726_FusoPortal_Gene_111 91 TDeNFDGLGKGTMRIIKDMGLKEPYVAISNIDYSNLPNDISAFFYNSEQIPSVISLAVECTNDgKILCAGAFMVQLLPNADEDF 174 995555999*******9965566********9999************************998779******************* PP HHHHHHHHCCS-.-HHH.HC.CC.-HHHHHHHHHHSTS.........-.EEEEEEE-EE-----HHHHHHHHHTT-CHHHHHHH CS HSP33 174 iedleerlkalaatlteeellee.lpaeellerlfhee.........dvevleekpvefkCrCsrervekaLkslgkeeleeil 247 i++le++++a++ +++e ++ + ++e++++ l++++ ++e+leek+++++C+C+ er++k +++lgkeel++i 23726_FusoPortal_Gene_111 175 ITKLERKAEAIR-PMNE-LM-KGgMSLERIINLLYDDMdtaddslveEYEILEEKEIKYSCDCNSERFQKGIMTLGKEELKHIF 255 ***********9.9988.55.335888********9996666555555************************************ PP HCCTEEEEE-TTT--EEEEE CS HSP33 248 eedgkievtCefCgkkYrfd 267 ee+++ie++C+fCgkkY+f+ 23726_FusoPortal_Gene_111 256 EEEKEIEAECQFCGKKYKFT 275 ******************96 PP >> zf-C2HC5 Putative zinc finger motif, C2HC5-type # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 0.0 0.00078 6.5 14 30 .. 144 160 .. 140 180 .. 0.87 2 ? -0.9 0.2 0.19 1.6e+03 2 10 .. 230 238 .. 229 240 .. 0.79 3 ? 3.8 0.1 0.0066 55 32 43 .. 260 271 .. 253 282 .. 0.74 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.00078 zf-C2HC5 14 leaapnClnCGkiiCak 30 +++a C+n Gki+Ca 23726_FusoPortal_Gene_111 144 ISLAVECTNDGKILCAG 160 678999*********85 PP == domain 2 score: -0.9 bits; conditional E-value: 0.19 zf-C2HC5 2 kkCnCqarr 10 ++C+C+ +r 23726_FusoPortal_Gene_111 230 YSCDCNSER 238 78***9876 PP == domain 3 score: 3.8 bits; conditional E-value: 0.0066 zf-C2HC5 32 glskpCsfCgsp 43 +++++C+fCg++ 23726_FusoPortal_Gene_111 260 EIEAECQFCGKK 271 45589****976 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (286 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 709 (0.0424246); expected 334.2 (0.02) Passed bias filter: 454 (0.0271661); expected 334.2 (0.02) Passed Vit filter: 38 (0.00227382); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.43u 0.38s 00:00:00.81 Elapsed: 00:00:00.53 # Mc/sec: 1568.70 // [ok]