# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1185.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1185 [L=301] Description: # 1285499 # 1286401 # 1 # ID=1_1185;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.272 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-16 59.6 4.8 9.1e-15 54.3 4.8 2.1 1 DevR CRISPR-associated negative auto-regulator DevR/Csa2 Domain annotation for each model (and alignments): >> DevR CRISPR-associated negative auto-regulator DevR/Csa2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.3 4.8 5.5e-19 9.1e-15 2 242 .. 7 222 .. 6 231 .. 0.78 Alignments for each domain: == domain 1 score: 54.3 bits; conditional E-value: 5.5e-19 EEEEE-------------------EEEEEE--TT--EEEEEE-THHHHHHHHHHHHHHHHTSTTSSBHHHHTT------TT-- CS DevR 2 sgrvvvnveaLNmdesvGNytehrkvpvvlkeeykvrtvpaiSgeslkHayfetlvklakennlpvcelckrvegdggvikfa 84 +++vv+n+ + N+ e++GN+ +++k+ ++ ++ + S+eslk a+++ ++ + + ++ +g ++++ 23726_FusoPortal_Gene_1185 7 TITVVANMTS-NYSEGLGNISSVQKIY------RDRNVYAIRSRESLKNAIMVQSGMYEDLE---TEA--------NGATQKK 71 6788888888.9*************99......778888888*****988776544444333...222........2233333 PP EEEBTTSEESS-HHHHHHH-HHHHHH-EEEGGGT..EEE--SEEE--BEE-TTTTTTT-----------.............- CS DevR 85 tekklkekelkvekeiikecvveDvfGfLitekeksvkRkspvkfsyavpveesekavvdaqfharydl.............l 154 ++ ++ ++ + +G+++t+++ + R+s ++++ a+++e++ + + fh+++ l + 23726_FusoPortal_Gene_1185 72 VDE-------NLNATNCRALE----GGYMNTKEN-TYVRNSSFYLTDAISTESFIN---ETRFHNNLYLatnyanthtdkngK 139 222.......34555555666....9*****666.699*****************5...667777777666777677766543 PP -----------------HHHHHSSEEEEEEEEEGGGTTS-TTS--EE---S-HHHHHHHHHHHHHTHHHHHH----------- CS DevR 155 enrarkkgeeeekqnifqvEehsalYalsfvlDldriGkpevkkskieyvleeeerkkRikaalkallnlLsgsfgakrarll 237 + + +k + e + +++q E+ +l ++s+++Dl++iGk+ + + +++e+ +R+k++l+a+ n Ls ++++ + 23726_FusoPortal_Gene_1185 140 SLNVQKDA-SEVGLMPYQYEYEKSLKVYSLTIDLEKIGKDPN---FPDKEANNNEKFERVKSLLEAVEN-LSLIVKGNLDNAE 217 33344433.77889*************************999...8999999*****************.99999******** PP ---EE CS DevR 238 Pvfev 242 Pvf + 23726_FusoPortal_Gene_1185 218 PVFAI 222 **965 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (301 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 629 (0.0376376); expected 334.2 (0.02) Passed bias filter: 341 (0.0204045); expected 334.2 (0.02) Passed Vit filter: 20 (0.00119674); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.26u 0.24s 00:00:00.50 Elapsed: 00:00:00.32 # Mc/sec: 2734.43 // [ok]