# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1196.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1196 [L=180] Description: # 1302293 # 1302832 # 1 # ID=1_1196;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.193 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.1e-12 47.5 13.3 1.2e-12 47.4 13.3 1.0 1 MFS_1 Major Facilitator Superfamily 4.2e-06 25.3 2.3 4.5e-06 25.2 2.3 1.0 1 MFS_3 Transmembrane secretion effector 0.00022 19.8 14.8 0.00026 19.6 14.0 1.5 1 MFS_2 MFS/sugar transport protein Domain annotation for each model (and alignments): >> MFS_1 Major Facilitator Superfamily # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 47.4 13.3 2.2e-16 1.2e-12 1 166 [. 11 179 .. 11 179 .. 0.89 Alignments for each domain: == domain 1 score: 47.4 bits; conditional E-value: 2.2e-16 MFS_1 1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa. 82 lll+ +s ++ +i++++lpl++ + + + g+ ++++ l + + s+++G ++++f + ++l++ +l+++ +++lf 23726_FusoPortal_Gene_1196 11 LLLGRSVSLFGNTIYLIVLPLYILNIT-QNLKFTGIFFAAVNLPTTIISIFIGTIIEKFNKKNIILISDFLTSIL-YFILFLy 91 57888999************8774444.48888**************************8888************.4444322 PP MFS_1 83 ...sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivs 161 s++ +l++ ++ + + ++ a+ +l++++ ++e +++gl s + +i+gp++g +l + +++ v +i+ +++ 23726_FusoPortal_Gene_1196 92 fknSNSLiFLFLISLIINIISKFFEIASKVLFSEINTPETLEKYNGLQSFLENTVMIIGPVIGTYLFATFSFNFVLIIISLAY 174 3477777788888888888899************************************************************* PP MFS_1 162 llafv 166 +l+f+ 23726_FusoPortal_Gene_1196 175 FLSFL 179 *9986 PP >> MFS_3 Transmembrane secretion effector # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.2 2.3 8.1e-10 4.5e-06 47 181 .. 43 176 .. 6 179 .. 0.86 Alignments for each domain: == domain 1 score: 25.2 bits; conditional E-value: 8.1e-10 MFS_3 47 vAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvg 129 + aa LP+ ++si+ G + ++f++++++l+ l + ++ l + + s + l ++l+i+i + + + a + + 23726_FusoPortal_Gene_1196 43 TGIFFAAVNLPTTIISIFIGTIIEKFNKKNIILISDFLTSI-LYFILFLYFKNSNSLIFLFLISLIINIISKFFEIASKVLFS 124 55667999**********************99988766554.5555667778888899999999******************* PP MFS_3 130 elvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsyla 181 e+ + + +++ L+s n++ +GP +g l a++ ++ + +l+y+ 23726_FusoPortal_Gene_1196 125 EINTPETLEKYNGLQSFLENTVMIIGPVIGTYLFATFSFNFVLIIISLAYFL 176 ******************************************9999999986 PP >> MFS_2 MFS/sugar transport protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.6 14.0 4.7e-08 0.00026 228 342 .. 10 126 .. 4 164 .. 0.84 Alignments for each domain: == domain 1 score: 19.6 bits; conditional E-value: 4.7e-08 MFS_2 228 illllfllaalalgvlnalllYyftyvlgngsaasvfllvvtigallgiplwqylakrigkkntyilgalltivllvlvlll. 309 +lll+ ++ +++ ++ l +y+ + n + +f+++v +++++ ++++ + +++kkn+++++ lt +l+++++l 23726_FusoPortal_Gene_1196 10 LLLLGRSVSLFGNTIYLIVLPLYILNITQNLKFTGIFFAAVNLPTTIISIFIGTIIEKFNKKNIILISDFLTSILYFILFLYf 92 68899999999999****************9999*************************************999999999888 PP MFS_2 310 .qpgnlllvlvllviagfgvgmafllpwsmladv 342 + ++l++++++ +i++++ ++ +++ +++++ 23726_FusoPortal_Gene_1196 93 kNSNSLIFLFLISLIINIISKFFEIASKVLFSEI 126 8999999999999******999999999998865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (180 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 980 (0.0586405); expected 334.2 (0.02) Passed bias filter: 245 (0.0146601); expected 334.2 (0.02) Passed Vit filter: 26 (0.00155577); expected 16.7 (0.001) Passed Fwd filter: 6 (0.000359023); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.26u 0.25s 00:00:00.51 Elapsed: 00:00:00.32 # Mc/sec: 1635.21 // [ok]