# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1222.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1222 [L=391] Description: # 1331984 # 1333156 # -1 # ID=1_1222;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.297 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.6e-78 262.6 44.2 6.5e-78 262.4 44.2 1.0 1 SDF Sodium:dicarboxylate symporter family Domain annotation for each model (and alignments): >> SDF Sodium:dicarboxylate symporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 262.4 44.2 3.9e-82 6.5e-78 1 388 [. 10 381 .. 10 383 .. 0.96 Alignments for each domain: == domain 1 score: 262.4 bits; conditional E-value: 3.9e-82 SDF 1 LllqiliglvlGlviGllelvkelaalisplgdlfinllkmlivPl.vfasiisgiaslgdakklgklglktllyfllttliA 82 L++++++g+++G++iGl +++e + + ++ ++f+ l +++vP ++ +i+ +i++l ++++ k++l +l++ +l+++ A 23726_FusoPortal_Gene_1222 10 LIIKLVLGVIAGIIIGL--VSNEQVISVILPIKFFLGELIFFVVPFiIIGFIAPAITQL--KSNASKMLLTMLGLSYLSSVGA 88 68899***********9..**************************98999*********..69******************** PP SDF 83 aiiglilalllkpgselaleassakeaekketdslld.lilslipsnifealaegnvlavivfailfGialaalgekgepllk 164 a++ +++++l p+ ++ ss + ++ l++ l++ ip+ i +v++++v+a+l+G+a++++ +++++ + 23726_FusoPortal_Gene_1222 89 ALFSATAGYVLIPK---LNIVSSVEGLKE-----LPEiLFKVQIPPAI-------SVMGALVLALLMGLAVVWT--NSKRTEE 154 **************...888888888877.....455267778*****.......*******************..7789*** PP SDF 165 ffeslnevvmkvvkivmk.laPigvfaliaslvas.kglgalsslakflltvylglaihllivlpllllvltkknplkflkki 245 +++++n++++ +v+ +++ ++Pi ++a++a+l+++ + +++l +++k++++v++g+ i+++i+++++ + +++knp+ +lk++ 23726_FusoPortal_Gene_1222 155 LLNEFNNIMLTIVNKIIIpILPIFIAATFATLAYEgSITKQLPVFLKVIVIVLIGHYIWITILYTIAGI-ISGKNPWSLLKHY 236 ***************9999****************888*****************************98.6667********* PP SDF 246 lpalltAfsTaSSaAtLPvtlecaeknlgvsesiasfvlPlGatinmdGtalyeavaaifiaqlfgvels.lgqllllvlvat 327 pa++tA++T+SSaAtLPv+l+c++k+ ++e+i++f++PlGat++++G++l+e+++++++++++ ++ +g+++l++++++ 23726_FusoPortal_Gene_1222 237 GPAYMTAVGTMSSAATLPVSLKCVKKSGVLDEEITNFAIPLGATTHLCGSVLTETFFVMVVSKILYGDVPpVGTMILFIVLLG 319 **************************8668**************************************999************ PP SDF 328 lasiGaagvPgaglva.lllvlsalglpvegialilaidrllDmfrTavNvtGdavaaliva 388 ++++Ga+gvPg++++a l+l++s+lg++ +g+al+++i +l+D+f+Ta+N+tGd ++ali++ 23726_FusoPortal_Gene_1222 320 IFAVGAPGVPGGTVLAsLGLIISVLGFDETGTALMITIFALQDSFGTACNITGDGALALILN 381 ***************99******************************************986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (391 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1014 (0.060675); expected 334.2 (0.02) Passed bias filter: 387 (0.023157); expected 334.2 (0.02) Passed Vit filter: 42 (0.00251316); expected 16.7 (0.001) Passed Fwd filter: 7 (0.000418861); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.34 # Mc/sec: 3343.09 // [ok]