# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1253.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1253 [L=95] Description: # 1374503 # 1374787 # -1 # ID=1_1253;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.267 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-38 130.0 3.3 2.5e-38 129.9 3.3 1.0 1 Ribosomal_L27 Ribosomal L27 protein Domain annotation for each model (and alignments): >> Ribosomal_L27 Ribosomal L27 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 129.9 3.3 1.5e-42 2.5e-38 1 79 [] 11 90 .. 11 90 .. 0.96 Alignments for each domain: == domain 1 score: 129.9 bits; conditional E-value: 1.5e-42 Ribosomal_L27 1 AhkkagGstkngrdskgkrlGvKkfggqlvkagnIivrQrgtkfhpGenvgiGkdhtlfAlvdGvVkfek.kkkrkyvsv 79 Ahkk++Gs kngrds++k+lGvKk++g++vkagnIivrQrgtk+h+G+n+giGkdhtlfAl+dG+Vkfe+ k++k++s+ 23726_FusoPortal_Gene_1253 11 AHKKGQGSVKNGRDSNPKYLGVKKYDGEVVKAGNIIVRQRGTKYHAGNNMGIGKDHTLFALIDGYVKFERlGKNKKQISI 90 9********************************************************************65778998876 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (95 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 276 (0.0165151); expected 334.2 (0.02) Passed bias filter: 206 (0.0123265); expected 334.2 (0.02) Passed Vit filter: 18 (0.00107707); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.22u 0.24s 00:00:00.46 Elapsed: 00:00:00.33 # Mc/sec: 836.87 // [ok]