# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1254.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1254 [L=110] Description: # 1374788 # 1375117 # -1 # ID=1_1254;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.276 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-24 86.0 0.0 1.6e-24 85.8 0.0 1.0 1 Peptidase_Prp Cysteine protease Prp Domain annotation for each model (and alignments): >> Peptidase_Prp Cysteine protease Prp # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.8 0.0 9.7e-29 1.6e-24 1 89 [. 1 101 [. 1 102 [. 0.98 Alignments for each domain: == domain 1 score: 85.8 bits; conditional E-value: 9.7e-29 -EEEEEEEETTEEEEEEEESTSS-SSHHHHHHHHHHHHHHHHHHHHHHHHS----................TTTTSHHHHHHH CS Peptidase_Prp 1 mikvtikkkngkivgfeisGHAgyaeaGeDiVCAavSalvittvnsleevlkekvelee............seeekekaqlll 71 m+kv+i++kng+ivg+++sGH+gy+e+G+Di+C+a+++ +++t+ +++evlk k++ ++ s+++ ++++l 23726_FusoPortal_Gene_1254 1 MTKVEIFRKNGSIVGYKASGHSGYSEQGSDIICSAITTSLQMTLAGIQEVLKLKPKFKIndgfldvdlrdiSQNKFTEINILT 83 9*******************************************************999***********999999******* PP HHHHHHHHHHHHH-TTTE CS Peptidase_Prp 72 etlvlgLeeieeeypeyi 89 e++ l L+e++++yp+yi 23726_FusoPortal_Gene_1254 84 ESMALFLRELAKQYPKYI 101 *****************9 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (110 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 373 (0.0223193); expected 334.2 (0.02) Passed bias filter: 283 (0.0169339); expected 334.2 (0.02) Passed Vit filter: 21 (0.00125658); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.22u 0.23s 00:00:00.45 Elapsed: 00:00:00.31 # Mc/sec: 1031.53 // [ok]