# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1262.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1262 [L=521] Description: # 1379344 # 1380906 # 1 # ID=1_1262;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.307 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-85 287.1 6.0 1.8e-85 287.1 6.0 1.5 2 SBP_bac_5 Bacterial extracellular solute-binding proteins, f ------ inclusion threshold ------ 0.071 12.8 0.3 11 5.7 0.0 2.8 2 DUF348 Domain of unknown function (DUF348) Domain annotation for each model (and alignments): >> SBP_bac_5 Bacterial extracellular solute-binding proteins, family 5 Middle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.8 0.0 0.26 2.2e+03 337 369 .. 30 62 .. 16 66 .. 0.77 2 ! 287.1 6.0 2.2e-89 1.8e-85 2 376 .. 82 440 .. 81 441 .. 0.94 Alignments for each domain: == domain 1 score: -2.8 bits; conditional E-value: 0.26 HHHHHHHHTTTESEEEEEEECTTSTTHHHHHHH CS SBP_bac_5 337 atylervkdgdfdmillgwgadypdpdnflnpf 369 a+ +e++ +g + i l w++ + dp + + + 23726_FusoPortal_Gene_1262 30 AVLTEAQANGGHMNIALYWFGETLDPAENWDGW 62 566677788888888889999999999988776 PP == domain 2 score: 287.1 bits; conditional E-value: 2.2e-89 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHCGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESS CS SBP_bac_5 2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkk 84 +v++LA+s we + D +t++f++R+gv+F++G+plt e+v+ s+er+++ ++++ +a +l + +vd v++++k+ 23726_FusoPortal_Gene_1262 82 LVGQLADS-WE-NIDETTWKFHIRQGVTFQNGNPLTPEAVKSSIERTVKINERGENALKL-------ASIDVDGEYVVIKTKE 155 799*****.56.********************************************9998.......57788888899***** PP ETTTTTTHHHHHHHHHGSHHSHCCCTTTTGTTTS--BSSSEEEEEEETTTEEEEEE-TTSTTTSGSSSSEEEEEE-.SHHHHH CS SBP_bac_5 85 pnalfltllaavpasiakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdara 167 p+ fl+ ++++ i+ +++ ++++++e p+ tGPY++++fkp + + ++ ++Yw ggkp+ld++++ i+d+++ra 23726_FusoPortal_Gene_1262 156 PYGAFLANISDPMFIIV-----DTSVDTSKFKETPICTGPYMVTSFKPATSFETVAYENYW-GGKPALDSVTVFDIEDDNTRA 232 **************999.....78999**********************************.********************* PP HHHHTTSSSEEESTTCCTHHHHHHHTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHTSTTSCEEESS CS SBP_bac_5 168 aalqsGeiddvaepppsdieqlkeakglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpans 250 ++lqsG++d ++++ ++di+ + ++k++ v ++++g+++++l++N +k+pf+dk++R A++ A+D+++i+k+v +g+a+pa + 23726_FusoPortal_Gene_1262 233 LSLQSGDVDMAQGIRAGDIALFTDNKDYIV-KSTTGTRIEFLVMNIEKAPFNDKNLRLAINSAVDYDTIAKVV-GGGAVPARA 313 ******************************.******************************************.********* PP SSTTTSTTCCCCGSSHSHHSHHHHHHHHHHHTT-BCSSTSEEETC....EEEEEEEEETTSHHHH.HHHHHHHHHHHHTTEEE CS SBP_bac_5 251 llppsspgadeeykpaykaydpekAkklLkeaGykdgdggglrek....klkltlllasgspaek.aiaeliqqqlkkiGikv 328 ++p s p+ + e +++ ++d+ek k lL+eaGykd++++g+ +k ++ ++ +a+g++ + +ael+ +qlk +Gik+ 23726_FusoPortal_Gene_1262 314 PFPASAPYGYSELNKQ--TFDLEKTKTLLAEAGYKDTNNDGYVDKdgknLELNIYGTAGGNTRANsTVAELLESQLKTAGIKA 394 ************9998..89***************************9744444445555554446***************** PP EEEEECHHHHHHHHHHTTTESEEEEEEECT.TSTTHHHHHHHHSTTGTT CS SBP_bac_5 329 evktvdwaatylervkdgdfdmillgwgad.ypdpdnflnpflsssgag 376 ++k ++ +e +k+g+fd+ + +w + ++d ++fl+++++++g+g 23726_FusoPortal_Gene_1262 395 NIKIAEN---LDEIKKNGEFDLLFQNWQTVsTGDSQWFLDNAFKTGGSG 440 *****88...7789*************99879********999988876 PP >> DUF348 Domain of unknown function (DUF348) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.2 0.0 0.0042 35 3 15 .. 142 154 .. 141 156 .. 0.88 2 ? 5.7 0.0 0.0013 11 17 28 .. 377 392 .. 368 403 .. 0.72 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.0042 EEETTEEEEE--- CS DUF348 3 ltvDGktvtvrTa 15 ++vDG+ v+++T 23726_FusoPortal_Gene_1262 142 IDVDGEYVVIKTK 154 89*********96 PP == domain 2 score: 5.7 bits; conditional E-value: 0.0013 SSHHHHHHHT....T- CS DUF348 17 dTVgdlLeea....gi 28 +TV++lLe++ gi 23726_FusoPortal_Gene_1262 377 STVAELLESQlktaGI 392 8*******88677733 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (521 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 714 (0.0427238); expected 334.2 (0.02) Passed bias filter: 496 (0.0296793); expected 334.2 (0.02) Passed Vit filter: 47 (0.00281235); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.42u 0.32s 00:00:00.74 Elapsed: 00:00:00.44 # Mc/sec: 3442.19 // [ok]