# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1270.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1270 [L=946] Description: # 1385980 # 1388817 # -1 # ID=1_1270;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.286 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-21 76.2 1.2 5.7e-09 36.5 0.2 4.7 3 ABC_tran ABC transporter 9.1e-16 57.9 1.6 2e-06 27.3 0.0 3.9 2 SMC_N RecF/RecN/SMC N terminal domain 7.8e-09 35.0 0.2 0.00065 19.3 0.1 2.6 2 AAA_29 P-loop containing region of AAA domain 3.3e-07 30.7 0.1 0.023 15.0 0.0 3.0 2 AAA_16 AAA ATPase domain 6.1e-07 29.4 11.5 5.9e-05 22.9 0.0 4.6 4 AAA_21 AAA domain, putative AbiEii toxin, Type IV T 8.9e-07 28.9 0.1 0.02 14.7 0.0 2.7 2 RsgA_GTPase RsgA GTPase 6.3e-05 22.9 0.6 2.4 8.1 0.0 4.3 3 AAA_14 AAA domain 7e-05 22.6 0.0 0.039 13.6 0.0 2.5 2 Viral_helicase1 Viral (Superfamily 1) RNA helicase 9e-05 23.0 16.2 0.0036 17.7 0.5 4.2 4 AAA_23 AAA domain 0.0001 22.0 3.2 0.032 13.9 0.0 3.6 3 AAA_24 AAA domain 0.0002 21.6 2.2 1.1 9.4 0.3 3.4 4 AAA_22 AAA domain 0.00021 20.6 0.0 0.02 14.1 0.0 2.8 3 FtsK_SpoIIIE FtsK/SpoIIIE family 0.00032 19.9 0.2 0.71 8.9 0.0 2.3 2 DUF2075 Uncharacterized conserved protein (DUF2075) 0.00089 18.3 1.4 0.98 8.3 0.0 3.3 3 T2SSE Type II/IV secretion system protein 0.00093 19.1 6.2 0.29 10.9 0.0 3.9 4 ATPase_2 ATPase domain predominantly from Archaea 0.0016 18.7 7.1 0.1 12.9 0.4 3.7 3 DnaJ_CXXCXGXG DnaJ central domain 0.0017 17.9 0.0 1.2 8.6 0.0 2.9 3 AAA_25 AAA domain 0.0026 17.0 0.1 1.4 8.1 0.0 2.9 2 ATPase KaiC 0.0031 17.0 8.6 0.11 12.0 0.4 3.9 3 cobW CobW/HypB/UreG, nucleotide-binding domain 0.0043 16.9 0.2 4.1 7.2 0.0 3.0 3 APS_kinase Adenylylsulphate kinase 0.0062 16.6 0.0 1.9 8.5 0.0 2.8 2 AAA_33 AAA domain 0.0088 16.5 4.4 1.5 9.3 0.1 3.2 2 AAA_18 AAA domain ------ inclusion threshold ------ 0.014 15.2 0.0 5.4 6.8 0.0 2.6 2 NACHT NACHT domain 0.023 14.5 0.0 1.6 8.7 0.1 2.6 2 BCA_ABC_TP_C Branched-chain amino acid ATP-binding casset 0.052 13.2 0.7 6.5 6.3 0.3 3.2 3 AAA_30 AAA domain 0.058 12.0 0.2 0.55 8.8 0.0 2.2 2 RNA12 RNA12 protein 0.27 11.2 3.2 5 7.1 0.5 3.2 3 MMR_HSR1 50S ribosome-binding GTPase 0.36 10.4 3.0 11 5.6 0.0 3.4 4 IstB_IS21 IstB-like ATP binding protein 0.74 9.8 5.5 0.18 11.8 0.6 2.3 2 DNA_ligase_ZBD NAD-dependent DNA ligase C4 zinc finger doma 2.7 6.8 8.5 7.9 5.3 0.1 4.2 5 ArgK ArgK protein 3.1 7.7 9.6 5.3 7.0 0.5 3.3 3 Anti-TRAP Tryptophan RNA-binding attenuator protein in 4.1 7.5 5.6 67 3.7 0.0 4.2 5 FANCL_C FANCL C-terminal domain 6.3 6.9 6.3 23 5.1 0.0 3.7 4 Zn-ribbon_8 Zinc ribbon domain Domain annotation for each model (and alignments): >> ABC_tran ABC transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.0 1e-05 0.0052 1 28 [. 15 42 .. 15 154 .. 0.86 2 ! 15.5 0.0 3.6e-05 0.018 79 135 .. 448 518 .. 373 520 .. 0.66 3 ! 36.5 0.2 1.1e-11 5.7e-09 1 136 [. 624 860 .. 624 861 .. 0.68 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 1e-05 EEEEEEEEETTSEEEEEESTTSSHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ABC_tran 1 lknvslklkegekvaivGenGaGKStLl 28 lkn++++l ++e ++i+G +G+GKS+L+ 23726_FusoPortal_Gene_1270 15 LKNIDIELPKNEFIVITGVSGSGKSSLA 42 79************************95 PP == domain 2 score: 15.5 bits; conditional E-value: 3.6e-05 H............HHHTCHHHHHHCSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSS..EEEEEST CS x............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF ABC_tran 79 n............esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpk..llllDEp 135 n e +ei + l+ + +++l+ ++++++++LSgG+ qr+ la + + + l++lDEp 23726_FusoPortal_Gene_1270 448 NmnltekqekiakEILKEIRERLTFMTNVGLDYLTLSRETKTLSGGESQRIRLATQIGSGLTgvLYVLDEP 518 0333221222333223334444444444456667777889**************99987654338999999 PP == domain 3 score: 36.5 bits; conditional E-value: 1.1e-11 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTT.SS--..SEEEE..................EETTEEGGGB-HHHCCHCEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx..xxxxx..................xxxxxxxxxxxxxxxxxxxx RF ABC_tran 1 lknvslklkegekvaivGenGaGKStLlkllag.llkp..teGei..................lldgkdlkeqeleslrkeig 62 lkn+++++ g +++++G +G+GKStL++ + l + ++G++ ++d++++ +++++ + 23726_FusoPortal_Gene_1270 624 LKNIDVEFPLGVMTVVTGVSGSGKSTLINSTLYpILFNklNKGKLypleykkieglnalekviNIDQTPIGRTPRS-NPATYT 705 79**************************965431332234899998777776666666666555555555552222.222222 PP EE-SS.--S-TTSBHHHH................................................................. CS xxxxx.xxxxxxxxxxxx................................................................. RF ABC_tran 63 vlpqe.pqlfpeltvren................................................................. 79 l+ + +f + 23726_FusoPortal_Gene_1270 706 KLFDDiRDIFA------Etqdaklhgfkkgrfsfnvkggrceacqgagilkiemnflpdvyvecevckgkrynketldvyykg 782 22222233333......134455678888999**************************************9999999988666 PP ............HHHTCHHHHHHCSTTGG.....................TTCBGESTTSGGS-HHHHHHHHHHHHHHH...T CS ............xxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...x RF ABC_tran 80 ............esdeeiekalsklglke.....................lkdtvvksspssLSgGqkqrvalarallk...k 126 e l+ ++++ +++LSgG+ qr++la l k 23726_FusoPortal_Gene_1270 783 kniydvlemsvlE---------------AyeffknipalerrlkvlidvgLDYIKLGQPATTLSGGEAQRIKLATELSKmskG 850 6655555444440...............23333333333344444444447778887888**************987651116 PP SSEEEEESTT CS xxxxxxxxxx RF ABC_tran 127 pkllllDEpt 136 ++++lDEpt 23726_FusoPortal_Gene_1270 851 NTVYILDEPT 860 67*******9 PP >> SMC_N RecF/RecN/SMC N terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.3 0.0 3.9e-09 2e-06 1 211 [. 1 563 [. 1 568 [. 0.91 2 ! 23.0 0.4 8.2e-08 4.1e-05 16 211 .. 625 904 .. 612 911 .. 0.78 Alignments for each domain: == domain 1 score: 27.3 bits; conditional E-value: 3.9e-09 -EEEEEEESCSSEECEEEEE-TTS.SEEEEEESTTSSHHHH.HHHHHHHHTT.TSSS--HHHHCCCT--.SSSSSTTCCE... CS xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx... RF SMC_N 1 vlkrleienFksyagktvilpfsk.sftaivGpNGSGKsnl.ldAilFvLGersakklrseklsdlihkskekasvkkae... 78 ++ +++i++ + + k++++++ k +f +i+G GSGKs+l +d i + G+r + + s+ +++ i + +k++v++ e 23726_FusoPortal_Gene_1270 1 MIDKITIKGARQHNLKNIDIELPKnEFIVITGVSGSGKSSLaFDTI-YSEGQRRYVESLSAYARQFIGQ-MNKPEVDSIEgls 81 58899999999999999999875427**************956888.****999988888899999998.5566555543211 PP ..EEECEEECCEE.....-B----BEEEEEEEETTT-EEEEETTEEE-HHHHHHHHHCTT--TT................... CS ..xxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................... RF SMC_N 79 ..veitfdnedkk.....lkiekeevsisrrvkrkgeseykingkevtkkevsellesagiske................... 135 ++i + ++++ +i++ +++ + g+ + i + v+k+ v e++es + + + 23726_FusoPortal_Gene_1270 82 paISIEQKTTNRNprstvGTITEVYDYLRLLFAHIGTAHCPICHTAVEKQSVDEIVESIMTKFDdgskiillapvvkdkkgth 164 1144433333333555444444445667777788899999******************9999999****************** PP ................................................................................... CS ................................................................................... RF SMC_N 136 ................................................................................... 135 23726_FusoPortal_Gene_1270 165 kniflnlfkkgfvrarvngevlyledeieldknkkhnievvvdrlvlkkddkdfesrltqsietaidlsngkliindgkndyl 247 *********************************************************************************** PP ................................................................................... CS ................................................................................... RF SMC_N 136 ................................................................................... 135 23726_FusoPortal_Gene_1270 248 ysenyscpnhedvsipelnprlfsfnapygacpeckglgkklevdenklienpelsiedggmyipgamarkgysweifkamak 330 *********************************************************************************** PP ................................................................................... CS ................................................................................... RF SMC_N 136 ................................................................................... 135 23726_FusoPortal_Gene_1270 331 vakidltkpvkdltqkeldiifygydekfrfdytggefdfhgykeyegavknlerryyetfsdaqkeeienkymverickvcn 413 *********************************************************************************** PP ...........................................................................CS-HHHHH CS ...........................................................................xxxxxxxx RF SMC_N 136 ...........................................................................lLSgGekt 143 +LSgGe + 23726_FusoPortal_Gene_1270 414 gkrlkdevlavtvngknimeicdmsiknsldffmnmnltekqekiakeilkeirerltfmtnvgldyltlsretkTLSGGESQ 496 *********************************************************************************99 PP HHHHHHHHHHHTCS--SEEEECSTTTTS-HHHHHHHHHHHHHHCCT.SEEEEE-SSHHHHTT-SCEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF SMC_N 144 LvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgv 211 + la i + ly+lDe L +k k+ l++ ++ +iv+ ++e+++ +adk++ + 23726_FusoPortal_Gene_1270 497 RIRLATQ--IGSGLTGVLYVLDEPSIGLHQKDNDKLLATLNRLKELgNTLIVVEHDEDTMMQADKILDI 563 7777765..67777889***********9999999888888777664889**************99876 PP == domain 2 score: 23.0 bits; conditional E-value: 8.2e-08 EEEEE-TTSS.EEEEEESTTSSHHHHHHHHHHHHTT.TSSS.....--H......HHHCCCT--.....SSSSSTTCCEEEEC CS xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxx......xxxxxxxxx....xxxxxxxxxxxxxxx RF SMC_N 16 ktvilpfsks.ftaivGpNGSGKsnlldAilFvLGersakk.....lrs......eklsdlihk....skekasvkkaeveit 82 k+++++f + +t+++G GSGKs l+++ l+ + +++ +k l + l+++i+ + ++++ a+ + + 23726_FusoPortal_Gene_1270 625 KNIDVEFPLGvMTVVTGVSGSGKSTLINSTLYPILFNKLNKgklypLEYkkieglNALEKVINIdqtpIGRTPRSNPATYTKL 707 4555555543179999************9988654332211111113330000012344455445555556666777777777 PP EEECCEE-B----BEEEEEEEETTT-EEEEETTEEE-HHHHHHHHH.CTT--TT............................. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx............................. RF SMC_N 83 fdnedkklkiekeevsisrrvkrkgeseykingkevtkkevselle.sagiske............................. 135 fd+ + +e + + ++kg+ ++ ++g +++ + + +l+ ++++ ++ 23726_FusoPortal_Gene_1270 708 FDDIRDI---FAETQDAKLHGFKKGRFSFNVKGGRCEACQGAGILKiEMNFLPDvyvecevckgkrynketldvyykgkniyd 787 7766665...56666778889999999999999999998887777635566666999999*********************** PP .........................................CS-HHHHHHHHHHHHHHHHTCS--SEEEECSTTTTS-HHHHH CS .........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 136 .........................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvk 177 +LSgGe + + la ++ ++ k + +y+lDe L ++ +k 23726_FusoPortal_Gene_1270 788 vlemsvleayeffknipalerrlkvlidvgldyiklgqpatTLSGGEAQRIKLATELS-KMSKGNTVYILDEPTTGLHFQDIK 869 ******************************************************9987.7889999***************** PP HHHHHHHHHCCT.SEEEEE-SSHHHHTT-SCEEEE CS xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF SMC_N 178 kvaellkekskn.aQfivislreemlekadklvgv 211 k+ e+l++ ++ +i+i ++ ++++ ad+++ + 23726_FusoPortal_Gene_1270 870 KLLEVLNRLLEKgNTVIIIEHNLDVIKTADHIIDI 904 ******987666599***************99987 PP >> AAA_29 P-loop containing region of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.0 0.0 0.00012 0.058 16 38 .. 19 41 .. 12 48 .. 0.80 2 ! 19.3 0.1 1.3e-06 0.00065 18 42 .. 630 654 .. 622 665 .. 0.78 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 0.00012 AAA_29 16 tieldlkgvtlltGpsGsGKSTl 38 +iel +++++++tG sGsGKS+l 23726_FusoPortal_Gene_1270 19 DIELPKNEFIVITGVSGSGKSSL 41 5666666799***********98 PP == domain 2 score: 19.3 bits; conditional E-value: 1.3e-06 AAA_29 18 eldlkg.vtlltGpsGsGKSTllDAi 42 e+ g +t++tG sGsGKSTl+ + 23726_FusoPortal_Gene_1270 630 EFP-LGvMTVVTGVSGSGKSTLINST 654 454.4569***************765 PP >> AAA_16 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 0.0 4.5e-05 0.023 25 76 .. 26 80 .. 12 204 .. 0.73 2 ! 12.1 0.1 0.00035 0.18 26 45 .. 636 655 .. 629 671 .. 0.88 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 4.5e-05 AAA_16 25 elvllsGesGvGKsslv.rellralekdggif..lrgkcdql..esaipysalaqal 76 e ++++G sG+GKssl+ ++++ + +++ ++ l++ ++q+ +++ p + ++ l 23726_FusoPortal_Gene_1270 26 EFIVITGVSGSGKSSLAfDTIYSEGQRR--YVesLSAYARQFigQMNKPEVDSIEGL 80 789**************88888644444..555699999999888887765555555 PP == domain 2 score: 12.1 bits; conditional E-value: 0.00035 AAA_16 26 lvllsGesGvGKsslvrell 45 +++++G sG+GKs+l+++ l 23726_FusoPortal_Gene_1270 636 MTVVTGVSGSGKSTLINSTL 655 689*************9876 PP >> AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 0.2 0.12 62 1 15 [. 27 41 .. 27 48 .. 0.93 2 ? 2.6 0.0 0.19 94 238 273 .. 491 525 .. 439 550 .. 0.72 3 ? 4.6 1.2 0.046 23 1 16 [. 636 651 .. 636 653 .. 0.93 4 ! 22.9 0.0 1.2e-07 5.9e-05 232 298 .. 825 891 .. 785 896 .. 0.81 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 0.12 AAA_21 1 lnvliGpNgsGKSnL 15 + v++G gsGKS+L 23726_FusoPortal_Gene_1270 27 FIVITGVSGSGKSSL 41 689**********98 PP == domain 2 score: 2.6 bits; conditional E-value: 0.19 AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPk 273 S G + ++l+t + + l l+++DEp gLH k 23726_FusoPortal_Gene_1270 491 SGGESQRIRLATQIGSGLTG-VLYVLDEPSIGLHQK 525 77777777999999999988.89***********84 PP == domain 3 score: 4.6 bits; conditional E-value: 0.046 AAA_21 1 lnvliGpNgsGKSnLL 16 ++v++G gsGKS+L+ 23726_FusoPortal_Gene_1270 636 MTVVTGVSGSGKSTLI 651 69*************8 PP == domain 4 score: 22.9 bits; conditional E-value: 1.2e-07 AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298 pa+ lS G + ++l+t l k ++++++DEp +gLH + +++lle+l++l ++g vi+ H+ 23726_FusoPortal_Gene_1270 825 QPATTLSGGEAQRIKLATELSKMSKGNTVYILDEPTTGLHFQDIKKLLEVLNRLLEKGNTVIIIEHN 891 57888999999889*************************************8888889999997666 PP >> RsgA_GTPase RsgA GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 11.0 0.0 0.00054 0.27 82 116 .. 7 42 .. 2 62 .. 0.80 2 ! 14.7 0.0 3.9e-05 0.02 70 118 .. 605 653 .. 590 663 .. 0.78 Alignments for each domain: == domain 1 score: 11.0 bits; conditional E-value: 0.00054 --TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHH CS RsgA_GTPase 82 vsaktkegleelkellkd.ktsvlvGqSGvGKStLi 116 ++ ++++l+++ +l + +++v+ G SG GKS+L 23726_FusoPortal_Gene_1270 7 IKGARQHNLKNIDIELPKnEFIVITGVSGSGKSSLA 42 55566789999999997779**************95 PP == domain 2 score: 14.7 bits; conditional E-value: 3.9e-05 HHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHH CS RsgA_GTPase 70 eelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLina 118 ++ ++++ ++ l ak +++l+++ ++ ++v+ G SG GKStLin+ 23726_FusoPortal_Gene_1270 605 KKRRKWDKSIKLYGAK-GNNLKNIDVEFPLgVMTVVTGVSGSGKSTLINS 653 5566666666666555.78888888877765899***************7 PP >> AAA_14 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.1 0.0 0.0048 2.4 2 27 .. 25 50 .. 24 78 .. 0.84 2 ? 6.6 0.0 0.013 6.8 5 27 .. 637 659 .. 634 721 .. 0.70 3 ? 3.0 0.0 0.17 88 53 96 .. 841 887 .. 813 930 .. 0.76 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.0048 AAA_14 2 rkilvitGaRrvGKTtllkqlikell 27 ++ +vitG+ +GK+ l+++ i+++ 23726_FusoPortal_Gene_1270 25 NEFIVITGVSGSGKSSLAFDTIYSEG 50 6789****************998876 PP == domain 2 score: 6.6 bits; conditional E-value: 0.013 AAA_14 5 lvitGaRrvGKTtllkqlikell 27 v+tG+ +GK+tl++ ++ l 23726_FusoPortal_Gene_1270 637 TVVTGVSGSGKSTLINSTLYPIL 659 79*************99887666 PP == domain 3 score: 3.0 bits; conditional E-value: 0.17 AAA_14 53 lelileklkeekktylflDE......iqevpewekalkslvdegknldvi 96 +++ + ++ +++t+ +lDE q ++++ ++l++l+++g n +i 23726_FusoPortal_Gene_1270 841 ATELSK-MS-KGNTVYILDEpttglhFQDIKKLLEVLNRLLEKG-NTVII 887 333333.33.4889999999555555577899999999999998.53333 PP >> Viral_helicase1 Viral (Superfamily 1) RNA helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.4 0.0 0.012 6.3 1 21 [. 28 48 .. 28 88 .. 0.69 2 ! 13.6 0.0 7.7e-05 0.039 1 21 [. 637 657 .. 637 680 .. 0.87 Alignments for each domain: == domain 1 score: 6.4 bits; conditional E-value: 0.012 Viral_helicase1 1 ivvhGvpGcGKStlirkllrt 21 iv+ Gv G+GKS+l + + + 23726_FusoPortal_Gene_1270 28 IVITGVSGSGKSSLAFDTIYS 48 79**********986655544 PP == domain 2 score: 13.6 bits; conditional E-value: 7.7e-05 Viral_helicase1 1 ivvhGvpGcGKStlirkllrt 21 +vv Gv G+GKStli + l + 23726_FusoPortal_Gene_1270 637 TVVTGVSGSGKSTLINSTLYP 657 69**************99876 PP >> AAA_23 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.7 0.5 7.1e-06 0.0036 1 35 [. 4 41 .. 4 46 .. 0.91 2 ? 0.4 0.1 1.4 7.3e+02 151 193 .. 181 223 .. 75 254 .. 0.49 3 ? 1.7 1.0 0.58 2.9e+02 88 169 .. 388 469 .. 328 540 .. 0.67 4 ! 11.6 0.2 0.00056 0.28 14 46 .. 628 662 .. 614 737 .. 0.78 Alignments for each domain: == domain 1 score: 17.7 bits; conditional E-value: 7.1e-06 AAA_23 1 kLkienfrsf..rdqeidF.skgltlItGpNGaGKTTi 35 k++i++ r++ ++ +i++ ++ + +ItG G+GK+++ 23726_FusoPortal_Gene_1270 4 KITIKGARQHnlKNIDIELpKNEFIVITGVSGSGKSSL 41 79********8888888889999*************98 PP == domain 2 score: 0.4 bits; conditional E-value: 1.4 AAA_23 151 kkerleelekeleeledekkllekleqekekekeleeleeele 193 + ++ le+e+e +++k +e + +++ +k ++ e++l+ 23726_FusoPortal_Gene_1270 181 VNGEVLYLEDEIELDKNKKHNIEVVVDRLVLKKDDKDFESRLT 223 1123333333333333333333333333333333333333332 PP == domain 3 score: 1.7 bits; conditional E-value: 0.58 AAA_23 88 rsiererekskkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfekfelkdkkerleelekeleeledek 169 ++ + +k++ ++k+ + + + ++ + l++++ + k+i++++++ + + + f +++ e+ e++ ke+ +++ e+ 23726_FusoPortal_Gene_1270 388 YETFSDAQKEEIENKYMVERICKVCNGKRLKDEVLAVTVNGKNIMEICDMSIKNSLDFFMNMNLTEKQEKIAKEILKEIRER 469 2222344444444444455555555558888888877777777888888888888777777776666666655544433333 PP == domain 4 score: 11.6 bits; conditional E-value: 0.00056 AAA_23 14 eidF.skgltlItGpNGaGKTTildAikl.aLyge 46 +++F +t++tG G+GK+T+++ + +L+++ 23726_FusoPortal_Gene_1270 628 DVEFpLGVMTVVTGVSGSGKSTLINSTLYpILFNK 662 455533348***************98766556664 PP >> AAA_24 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 0.0 0.021 11 5 20 .. 28 43 .. 24 52 .. 0.88 2 ? 0.5 0.0 0.78 4e+02 108 134 .. 527 553 .. 521 561 .. 0.82 3 ! 13.9 0.0 6.3e-05 0.032 3 69 .. 635 707 .. 633 727 .. 0.79 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.021 AAA_24 5 iliyGpsgiGKTtlak 20 i+i+G sg+GK++la 23726_FusoPortal_Gene_1270 28 IVITGVSGSGKSSLAF 43 89***********996 PP == domain 2 score: 0.5 bits; conditional E-value: 0.78 AAA_24 108 aeefrrllkklqelrknvifiahektr 134 ++++ +l++l+el+++ i++ h + 23726_FusoPortal_Gene_1270 527 NDKLLATLNRLKELGNTLIVVEHDEDT 553 5778899**************998765 PP == domain 3 score: 13.9 bits; conditional E-value: 6.3e-05 AAA_24 3 lkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel........aaeladyktl 69 ++ +++G sg+GK+tl+++ + +lf ++kG l++ ++++ie+++++ + ++ + + ++a+y l 23726_FusoPortal_Gene_1270 635 VMTVVTGVSGSGKSTLINSTLYPILFNKLNKGK--LYPLEYKKIEGLNALEKVINIDqtpigrtpRSNPATYTKL 707 6789***************99**********76..9999999999888887777777666666665555555544 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.4 0.0 0.0023 1.1 6 34 .. 26 54 .. 23 113 .. 0.75 2 ? -1.7 0.0 6 3e+03 47 99 .. 449 517 .. 438 547 .. 0.58 3 ! 9.4 0.3 0.0022 1.1 7 24 .. 636 653 .. 634 659 .. 0.89 4 ? -2.3 0.0 9.2 4.7e+03 93 123 .. 852 884 .. 832 922 .. 0.62 Alignments for each domain: == domain 1 score: 9.4 bits; conditional E-value: 0.0023 AAA_22 6 gilvvtGesGtGKTtllrrlleqldeeak 34 ++v+tG sG+GK+ l+ ++ ++ + 23726_FusoPortal_Gene_1270 26 EFIVITGVSGSGKSSLAFDTIYSEGQRRY 54 69************998666666555555 PP == domain 2 score: -1.7 bits; conditional E-value: 6 AAA_22 47 lpsstsskdllrellralglelka..................erlsseellealeqalraravielliiDE 99 ++ ++++++++e+l+++ ++l + + +++ +++ +q + +l ++DE 23726_FusoPortal_Gene_1270 449 MNLTEKQEKIAKEILKEIRERLTFmtnvgldyltlsretktlS-GGESQRIRLATQIGSGLTG-VLYVLDE 517 4445577778888888888777777777777777666555532.2333333333333333333.4667776 PP == domain 3 score: 9.4 bits; conditional E-value: 0.0022 AAA_22 7 ilvvtGesGtGKTtllrr 24 ++vvtG sG+GK+tl++ 23726_FusoPortal_Gene_1270 636 MTVVTGVSGSGKSTLINS 653 689************985 PP == domain 4 score: -2.3 bits; conditional E-value: 9.2 AAA_22 93 elliiDEaqh.lrs....eealeeLrsllnlsrkgv 123 + i+DE l + +++le L +ll+ + ++ 23726_FusoPortal_Gene_1270 852 TVYILDEPTTgL-HfqdiKKLLEVLNRLLE--KGNT 884 455555555444.22233333443333333..3333 PP >> FtsK_SpoIIIE FtsK/SpoIIIE family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 0.0 0.093 47 32 54 .. 19 40 .. 6 46 .. 0.85 2 ? -3.3 0.0 8.3 4.2e+03 113 133 .. 380 401 .. 379 425 .. 0.82 3 ! 14.1 0.0 4e-05 0.02 17 120 .. 615 715 .. 602 743 .. 0.76 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 0.093 EEEGGGS-.SEEEE--TTSSHHH CS FtsK_SpoIIIE 32 vldlkkmashllvaGatgsGKSt 54 ++l+k++ +++ G +gsGKS 23726_FusoPortal_Gene_1270 19 DIELPKNE-FIVITGVSGSGKSS 40 56778888.99***********6 PP == domain 2 score: -3.3 bits; conditional E-value: 8.3 HHHHHHHH.HHHHHTT-SSHHH CS FtsK_SpoIIIE 113 vkemeery.alfreagvrsiaa 133 vk +e+ry + f++a+ ++i++ 23726_FusoPortal_Gene_1270 380 VKNLERRYyETFSDAQKEEIEN 401 6789999999999999999987 PP == domain 3 score: 14.1 bits; conditional E-value: 4e-05 TTEEEEEEETTS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS.SCGGGTT-TTBSS.S- CS FtsK_SpoIIIE 17 qlpvalgkeisgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv.elsalediphllsvav 98 +l +a g + ++ +++ l +m+ +v G +gsGKSt +n+ + +++ ++ ++ +l+ + yk + l+ale++ + ++++ 23726_FusoPortal_Gene_1270 615 KLYGAKGNNLKNIDVEFPLGVMT---VVTGVSGSGKSTLINSTLYPILF-NKLNKGKLYPLEYKKIeGLNALEKVINIDQTPI 693 55556666666667777777777...9**********************.889999**********88999999988888888 PP B-SHHHHHHHHHHHHHHHHHHH CS FtsK_SpoIIIE 99 atdperalraleeLvkemeery 120 p ++ +L + +++ + 23726_FusoPortal_Gene_1270 694 GRTPRSNPATYTKLFDDIRDIF 715 7777777777777777666655 PP >> DUF2075 Uncharacterized conserved protein (DUF2075) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.9 0.0 0.0014 0.71 3 26 .. 27 56 .. 25 105 .. 0.74 2 ! 8.8 0.1 0.0016 0.79 3 29 .. 636 662 .. 634 691 .. 0.83 Alignments for each domain: == domain 1 score: 8.9 bits; conditional E-value: 0.0014 DUF2075 3 vvlVtGvaGtGKtvvllnllael......e 26 +++tGv+G+GK+ +++ ++ e 23726_FusoPortal_Gene_1270 27 FIVITGVSGSGKSSLAFDTIYSEgqrryvE 56 689**************9999875444433 PP == domain 2 score: 8.8 bits; conditional E-value: 0.0016 DUF2075 3 vvlVtGvaGtGKtvvllnllaeledde 29 + +VtGv+G+GK+ + ++ l+ + ++ 23726_FusoPortal_Gene_1270 636 MTVVTGVSGSGKSTLINSTLYPILFNK 662 789**************9999884444 PP >> T2SSE Type II/IV secretion system protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.9 0.0 0.021 10 107 146 .. 4 42 .. 1 52 [. 0.72 2 ? 1.9 0.1 0.17 88 139 185 .. 162 215 .. 129 228 .. 0.74 3 ! 8.3 0.0 0.0019 0.98 130 151 .. 635 656 .. 603 665 .. 0.86 Alignments for each domain: == domain 1 score: 4.9 bits; conditional E-value: 0.021 T2SSE 107 dlgaeealkekiaev.lrkavrerglilvsGgTgsGKttll 146 ++ +++a +++++++ ++ + ++ i+++G gsGK+ l+ 23726_FusoPortal_Gene_1270 4 KITIKGARQHNLKNIdIELP--KNEFIVITGVSGSGKSSLA 42 56666666666666534444..8899***********9876 PP == domain 2 score: 1.9 bits; conditional E-value: 0.17 T2SSE 139 gsGKttllyallkeinks..derivtvEDpvEiqleganqvqlnak.....kak 185 g+ K ++l+ k + + +++ +ED +E++ ++++ ++++ + k + 23726_FusoPortal_Gene_1270 162 GTHKNIFLNLFKKGFVRArvNGEVLYLEDEIELDKNKKHNIEVVVDrlvlkKDD 215 55566666665543333337889999*********9999999988755555444 PP == domain 3 score: 8.3 bits; conditional E-value: 0.0019 T2SSE 130 glilvsGgTgsGKttllyallk 151 + +v+G gsGK+tl+++ l 23726_FusoPortal_Gene_1270 635 VMTVVTGVSGSGKSTLINSTLY 656 5789**************9885 PP >> ATPase_2 ATPase domain predominantly from Archaea # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.9 0.0 0.00057 0.29 16 113 .. 21 116 .. 10 124 .. 0.60 2 ? -2.1 0.5 5.3 2.7e+03 57 83 .. 383 435 .. 371 471 .. 0.43 3 ! 7.2 0.0 0.0079 4 22 68 .. 636 682 .. 629 724 .. 0.69 4 ? 1.3 0.0 0.48 2.4e+02 74 124 .. 836 888 .. 809 909 .. 0.78 Alignments for each domain: == domain 1 score: 10.9 bits; conditional E-value: 0.00057 ATPase_2 16 erepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekal......giavpkaele 92 e +ne+++i+G gsGK++L i + yv ++a +++i ++++ e ++ + l+ a+ ++ p+ ++ 23726_FusoPortal_Gene_1270 21 ELPKNEFIVITGVSGSGKSSLAFDTIYSEGQ-RRYVESLSAYARQFIGQMNKP--EVDSIEGLSPAIsieqktTNRNPRSTV- 99 445699***************9999988855.345555566666666666655..444444444444111111444444444. PP ATPase_2 93 eilkeksklvfkaiellleki 113 ++++v+ ++ ll++ i 23726_FusoPortal_Gene_1270 100 ----GTITEVYDYLRLLFAHI 116 ....44466677776666655 PP == domain 2 score: -2.1 bits; conditional E-value: 5.3 ATPase_2 57 lreesiskldefieeeeekkklekal..........................g 83 l++++ +++++ +ee e+k++ + + 23726_FusoPortal_Gene_1270 383 LERRYYETFSDAQKEEIENKYMVERIckvcngkrlkdevlavtvngknimeiC 435 44444444444433444444444444344444444444443333333333332 PP == domain 3 score: 7.2 bits; conditional E-value: 0.0079 ATPase_2 22 iyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldef 68 + +++G gsGK++L++ + + + ++ +++l+ ++i+ l+ 23726_FusoPortal_Gene_1270 636 MTVVTGVSGSGKSTLINSTLYPILFNKLNKGKLYPLEYKKIEGLNAL 682 679**************988766555555555556666666655555 PP == domain 4 score: 1.3 bits; conditional E-value: 0.48 ATPase_2 74 ekkklekalgiavpkaeleeilk.eksklvfkaielllekikkkgkk..iiiii 124 ++ kl+ l++ + +++ il+ ++ l f+ i++lle +++ k +iii 23726_FusoPortal_Gene_1270 836 QRIKLATELSKMSKGNTV-YILDePTTGLHFQDIKKLLEVLNRLLEKgnTVIII 888 555666666666677777.67777889999**********99998888855554 PP >> DnaJ_CXXCXGXG DnaJ central domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 0.0 0.081 41 16 53 .. 278 288 .. 270 300 .. 0.64 2 ? 2.6 0.1 0.32 1.6e+02 15 24 .. 407 416 .. 393 436 .. 0.65 3 ! 12.9 0.4 0.00021 0.1 15 51 .. 738 770 .. 725 776 .. 0.74 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.081 DnaJ_CXXCXGXG 16 tCktCkGsGvvreeqqtlgpfvqqsqstCpeCeGtGkv 53 C++CkG G k 23726_FusoPortal_Gene_1270 278 ACPECKGLG---------------------------KK 288 466666666...........................32 PP == domain 2 score: 2.6 bits; conditional E-value: 0.32 DnaJ_CXXCXGXG 15 ktCktCkGsG 24 + Ck C+G+ 23726_FusoPortal_Gene_1270 407 RICKVCNGKR 416 3355555554 PP == domain 3 score: 12.9 bits; conditional E-value: 0.00021 DnaJ_CXXCXGXG 15 ktCktCkGsGvvreeqqtlgpfvqqsqstCpeCeGtG 51 +C++C+G G + e++ f + +C+ C+G+ 23726_FusoPortal_Gene_1270 738 GRCEACQGAGILKIEMN----FLPDVYVECEVCKGKR 770 47********6555553....44466789*****986 PP >> AAA_25 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.6 0.0 0.0023 1.2 30 53 .. 22 45 .. 7 49 .. 0.85 2 ? -2.7 0.0 6.9 3.5e+03 79 98 .. 376 404 .. 373 434 .. 0.65 3 ? 5.6 0.0 0.019 9.8 30 50 .. 631 651 .. 618 665 .. 0.88 Alignments for each domain: == domain 1 score: 8.6 bits; conditional E-value: 0.0023 AAA_25 30 lpagelallaGapgtGKttlaldl 53 lp++e+++++G +g+GK+ la d 23726_FusoPortal_Gene_1270 22 LPKNEFIVITGVSGSGKSSLAFDT 45 69*******************986 PP == domain 2 score: -2.7 bits; conditional E-value: 6.9 AAA_25 79 aEdsedelrrRlravgeal.........r 98 E++ ++l+rR+++++ ++ 23726_FusoPortal_Gene_1270 376 YEGAVKNLERRYYETFSDAqkeeienkyM 404 68999999999999998875544444440 PP == domain 3 score: 5.6 bits; conditional E-value: 0.019 AAA_25 30 lpagelallaGapgtGKttla 50 p+g ++++G +g+GK+tl 23726_FusoPortal_Gene_1270 631 FPLGVMTVVTGVSGSGKSTLI 651 4899***************97 PP >> ATPase KaiC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 8.1 0.0 0.0027 1.4 16 42 .. 22 48 .. 14 97 .. 0.88 2 ? 5.5 0.1 0.017 8.8 16 36 .. 631 651 .. 624 657 .. 0.87 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.0027 ATPase 16 ipegrvvlitGepGtGKtifalqFlik 42 +p+++ + itG++G+GK+ +a +++ 23726_FusoPortal_Gene_1270 22 LPKNEFIVITGVSGSGKSSLAFDTIYS 48 799***************999776665 PP == domain 2 score: 5.5 bits; conditional E-value: 0.017 ATPase 16 ipegrvvlitGepGtGKtifa 36 +p g ++ +tG++G+GK+++ 23726_FusoPortal_Gene_1270 631 FPLGVMTVVTGVSGSGKSTLI 651 788999************985 PP >> cobW CobW/HypB/UreG, nucleotide-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.4 0.0 0.046 23 3 22 .. 28 47 .. 26 55 .. 0.78 2 ? 3.4 0.2 0.091 46 102 170 .. 395 463 .. 384 472 .. 0.88 3 ! 12.0 0.4 0.00021 0.11 2 21 .. 636 655 .. 635 668 .. 0.85 Alignments for each domain: == domain 1 score: 4.4 bits; conditional E-value: 0.046 EEEEESTTCCHHHHHHHHHC CS cobW 3 tvltGflGsGKTtLlnhlle 22 +v+tG GsGK++L ++ 23726_FusoPortal_Gene_1270 28 IVITGVSGSGKSSLAFDTIY 47 79***********9877774 PP == domain 2 score: 3.4 bits; conditional E-value: 0.091 TSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHHHHHH CS cobW 102 teeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeeallekleerlrqln 170 ++ee+++++ ++ + v ++k+l++e + ++++ ++ +d+ + n D + +l+ek e++++++ 23726_FusoPortal_Gene_1270 395 QKEEIENKYMVERICKVCNGKRLKDEVLAVTVNGKNIMEICDMSIKNSLDFFMNMNLTEKQEKIAKEIL 463 489999*****************9999************************999988898888888775 PP == domain 3 score: 12.0 bits; conditional E-value: 0.00021 EEEEEESTTCCHHHHHHHHH CS cobW 2 vtvltGflGsGKTtLlnhll 21 +tv+tG GsGK+tL+n++l 23726_FusoPortal_Gene_1270 636 MTVVTGVSGSGKSTLINSTL 655 69***************998 PP >> APS_kinase Adenylylsulphate kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.2 0.0 0.008 4.1 4 20 .. 27 43 .. 24 56 .. 0.85 2 ? -2.8 0.0 9.7 4.9e+03 7 42 .. 590 625 .. 590 626 .. 0.88 3 ? 6.3 0.0 0.015 7.8 3 21 .. 635 653 .. 633 671 .. 0.77 Alignments for each domain: == domain 1 score: 7.2 bits; conditional E-value: 0.008 EEEEESSTTSSHHHHHH CS APS_kinase 4 vvwltGlsgsGKstian 20 + +tG+sgsGKs++a+ 23726_FusoPortal_Gene_1270 27 FIVITGVSGSGKSSLAF 43 5889***********97 PP == domain 2 score: -2.8 bits; conditional E-value: 9.7 EESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHT CS APS_kinase 7 ltGlsgsGKstianalekkLvekgisvylLdGdnvR 42 +tG sGK++i +++ +k i+ y G+n++ 23726_FusoPortal_Gene_1270 590 ITGKFLSGKEAIDIPKKRRKWDKSIKLYGAKGNNLK 625 699999******999999999999999999999875 PP == domain 3 score: 6.3 bits; conditional E-value: 0.015 EEEEEESSTTSSHHHHHHH CS APS_kinase 3 vvvwltGlsgsGKstiana 21 v+ +tG+sgsGKst+ n 23726_FusoPortal_Gene_1270 635 VMTVVTGVSGSGKSTLINS 653 66779**********8653 PP >> AAA_33 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.0 0.043 22 2 16 .. 28 42 .. 27 103 .. 0.82 2 ! 8.5 0.0 0.0038 1.9 2 18 .. 637 653 .. 636 714 .. 0.92 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.043 AAA_33 2 vllvGlpGsGKstla 16 +++ G++GsGKs la 23726_FusoPortal_Gene_1270 28 IVITGVSGSGKSSLA 42 6789********998 PP == domain 2 score: 8.5 bits; conditional E-value: 0.0038 AAA_33 2 vllvGlpGsGKstlaer 18 +++ G++GsGKstl+ + 23726_FusoPortal_Gene_1270 637 TVVTGVSGSGKSTLINS 653 6889**********876 PP >> AAA_18 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 9.3 0.1 0.0029 1.5 1 15 [. 28 42 .. 28 52 .. 0.95 2 ? 7.1 0.6 0.014 7 2 15 .. 638 651 .. 638 653 .. 0.90 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.0029 AAA_18 1 IlltGtpGvGKttla 15 I++tG++G+GK++la 23726_FusoPortal_Gene_1270 28 IVITGVSGSGKSSLA 42 99***********98 PP == domain 2 score: 7.1 bits; conditional E-value: 0.014 AAA_18 2 lltGtpGvGKttla 15 ++tG++G+GK+tl 23726_FusoPortal_Gene_1270 638 VVTGVSGSGKSTLI 651 59**********96 PP >> NACHT NACHT domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.7 0.0 0.023 12 3 17 .. 28 42 .. 26 73 .. 0.87 2 ? 6.8 0.0 0.011 5.4 3 19 .. 637 653 .. 635 673 .. 0.79 Alignments for each domain: == domain 1 score: 5.7 bits; conditional E-value: 0.023 NACHT 3 vilqGeaGsGKTtLl 17 ++++G +GsGK+ L+ 23726_FusoPortal_Gene_1270 28 IVITGVSGSGKSSLA 42 89***********98 PP == domain 2 score: 6.8 bits; conditional E-value: 0.011 NACHT 3 vilqGeaGsGKTtLlqk 19 +++G +GsGK+tL+ + 23726_FusoPortal_Gene_1270 637 TVVTGVSGSGKSTLINS 653 689***********987 PP >> BCA_ABC_TP_C Branched-chain amino acid ATP-binding cassette transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.0 0.16 83 3 15 .. 575 587 .. 574 588 .. 0.86 2 ? 8.7 0.1 0.0031 1.6 2 12 .. 915 925 .. 914 929 .. 0.86 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.16 BCA_ABC_TP_C 3 IAeGtPaEvrndP 15 A G+P E++++ 23726_FusoPortal_Gene_1270 575 VAFGSPKEIMKNK 587 688********97 PP == domain 2 score: 8.7 bits; conditional E-value: 0.0031 BCA_ABC_TP_C 2 vIAeGtPaEvr 12 v A+GtP+E+ 23726_FusoPortal_Gene_1270 915 VVATGTPEEIA 925 89********6 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.2 0.0 0.23 1.2e+02 19 34 .. 26 41 .. 21 58 .. 0.88 2 ? 6.3 0.3 0.013 6.5 20 37 .. 636 653 .. 633 656 .. 0.88 3 ? -0.4 0.0 1.5 7.7e+02 83 121 .. 844 887 .. 822 889 .. 0.63 Alignments for each domain: == domain 1 score: 2.2 bits; conditional E-value: 0.23 AAA_30 19 rvavltGpAGtGKtta 34 + v+tG+ G+GK+ + 23726_FusoPortal_Gene_1270 26 EFIVITGVSGSGKSSL 41 5789*********975 PP == domain 2 score: 6.3 bits; conditional E-value: 0.013 AAA_30 20 vavltGpAGtGKttalka 37 ++v+tG+ G+GK+t++++ 23726_FusoPortal_Gene_1270 636 MTVVTGVSGSGKSTLINS 653 789***********9975 PP == domain 3 score: -0.4 bits; conditional E-value: 1.5 AAA_30 83 rarlepg.tllivDEagmv....dtkqlaallkaaekagakvil 121 ++++g t++i DE d+k+l ++l+++ ++g +vi+ 23726_FusoPortal_Gene_1270 844 LSKMSKGnTVYILDEPTTGlhfqDIKKLLEVLNRLLEKGNTVII 887 334556669******76544455777777777777777777765 PP >> RNA12 RNA12 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.8 0.0 0.0011 0.55 16 39 .. 24 47 .. 11 58 .. 0.79 2 ? 0.4 0.1 0.39 2e+02 20 39 .. 637 655 .. 631 657 .. 0.87 Alignments for each domain: == domain 1 score: 8.8 bits; conditional E-value: 0.0011 RNA12 16 vntFivvkGPrGSGkkeLvldrvl 39 n Fiv++G GSGk++L +d + 23726_FusoPortal_Gene_1270 24 KNEFIVITGVSGSGKSSLAFDTIY 47 688***************998765 PP == domain 2 score: 0.4 bits; conditional E-value: 0.39 RNA12 20 ivvkGPrGSGkkeLvldrvl 39 +vv+G GSGk+ L+ + +l 23726_FusoPortal_Gene_1270 637 TVVTGVSGSGKSTLI-NSTL 655 79************9.7665 PP >> MMR_HSR1 50S ribosome-binding GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.0 0.24 1.2e+02 2 15 .. 28 41 .. 27 59 .. 0.90 2 ? -2.3 0.0 8.3 4.2e+03 48 84 .. 512 548 .. 480 562 .. 0.58 3 ? 7.1 0.5 0.0099 5 3 19 .. 638 654 .. 636 667 .. 0.89 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.24 EEEEESTTSSHHHH CS MMR_HSR1 2 vaivGrpNvGKStL 15 ++i G + +GKS+L 23726_FusoPortal_Gene_1270 28 IVITGVSGSGKSSL 41 89***********9 PP == domain 2 score: -2.3 bits; conditional E-value: 8.3 EEEEECGGTSSHHHHHH.HHHHHHHHHHHTSEEEEEEE CS MMR_HSR1 48 ielvDtpGliegaseek.glgkaflaleeadlillvvd 84 ++++D p i+ +++++ +l ++ +l+e l+vv+ 23726_FusoPortal_Gene_1270 512 LYVLDEPS-IGLHQKDNdKLLATLNRLKELGNTLIVVE 548 55666666.43222233356666666666666666665 PP == domain 3 score: 7.1 bits; conditional E-value: 0.0099 EEEESTTSSHHHHHHHH CS MMR_HSR1 3 aivGrpNvGKStLinal 19 ++ G + +GKStLin+ 23726_FusoPortal_Gene_1270 638 VVTGVSGSGKSTLINST 654 689************85 PP >> IstB_IS21 IstB-like ATP binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 0.0 0.022 11 46 65 .. 24 43 .. 8 52 .. 0.89 2 ? -2.5 0.0 6.6 3.3e+03 84 120 .. 443 479 .. 422 490 .. 0.77 3 ? -1.7 0.1 3.8 1.9e+03 51 63 .. 638 650 .. 636 654 .. 0.86 4 ? 3.2 0.0 0.12 61 96 146 .. 837 887 .. 825 903 .. 0.79 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.022 IstB_IS21 46 kkenivllGpsGvGKshlai 65 k+e iv++G sG GKs la 23726_FusoPortal_Gene_1270 24 KNEFIVITGVSGSGKSSLAF 43 7899*************995 PP == domain 2 score: -2.5 bits; conditional E-value: 6.6 IstB_IS21 84 edLveelkrarrdgklaralkrllkvdllilDdlgll 120 d++ ++++ ++++k+a+++ + ++ +l + ++gl 23726_FusoPortal_Gene_1270 443 LDFFMNMNLTEKQEKIAKEILKEIRERLTFMTNVGLD 479 5788899999999999999999999999999988864 PP == domain 3 score: -1.7 bits; conditional E-value: 3.8 IstB_IS21 51 vllGpsGvGKshl 63 v++G sG GKs l 23726_FusoPortal_Gene_1270 638 VVTGVSGSGKSTL 650 899********87 PP == domain 4 score: 3.2 bits; conditional E-value: 0.12 IstB_IS21 96 dgklaralkrllkv.dllilDdlgllpldqaeaellfeviekryerrsiiit 146 kla++l+++ k ++ ilD+ + l ++ ++l+ev+++ e+ ++i 23726_FusoPortal_Gene_1270 837 RIKLATELSKMSKGnTVYILDEPT-TGLHFQDIKKLLEVLNRLLEKGNTVII 887 557888888888875788999965.5688889999**********9887764 PP >> DNA_ligase_ZBD NAD-dependent DNA ligase C4 zinc finger domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.6 0.00035 0.18 1 12 [. 120 131 .. 120 138 .. 0.81 2 ? -0.8 0.4 2.9 1.5e+03 2 6 .. 279 283 .. 278 285 .. 0.87 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.00035 DNA_ligase_ZBD 1 hCPvCGsavvRe 12 hCP+C++av++ 23726_FusoPortal_Gene_1270 120 HCPICHTAVEKQ 131 9*********74 PP == domain 2 score: -0.8 bits; conditional E-value: 2.9 DNA_ligase_ZBD 2 CPvCG 6 CP+C 23726_FusoPortal_Gene_1270 279 CPECK 283 ****6 PP >> ArgK ArgK protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.7 0.0 0.19 94 27 45 .. 23 41 .. 8 53 .. 0.78 2 ? -3.6 0.2 7.7 3.9e+03 159 196 .. 195 233 .. 191 236 .. 0.74 3 ? 1.5 0.1 0.22 1.1e+02 160 199 .. 426 466 .. 404 484 .. 0.81 4 ? 5.3 0.1 0.016 7.9 34 48 .. 639 653 .. 633 663 .. 0.86 5 ? -1.4 0.0 1.7 8.5e+02 81 149 .. 842 904 .. 825 917 .. 0.74 Alignments for each domain: == domain 1 score: 1.7 bits; conditional E-value: 0.19 S-SEEEEEEE-TTSSHHHH CS ArgK 27 GraqvvGltGvPGaGkstl 45 + + + +tGv G+Gks l 23726_FusoPortal_Gene_1270 23 PKNEFIVITGVSGSGKSSL 41 5667789**********87 PP == domain 2 score: -3.6 bits; conditional E-value: 7.7 TT--CCCHH.H-SEEEEE---HHHHHHHHHHHHHHHHHC CS ArgK 159 qgikkGile.iaDiivvnkaDkkeaekaarelraalele 196 +kk +e + D +v+ k+Dk ++ ++ +++a++l+ 23726_FusoPortal_Gene_1270 195 DKNKKHNIEvVVDRLVLKKDDKDFESRLTQSIETAIDLS 233 556666666257999999999988888888888887765 PP == domain 3 score: 1.5 bits; conditional E-value: 0.22 T--CCCHHH-SEEEEE---.HHHHHHHHHHHHHHHHHCSTT CS ArgK 160 gikkGileiaDiivvnkaD.kkeaekaarelraaleleeek 199 ++ k i+ei D+ + n D + + ++++ + a e+++e 23726_FusoPortal_Gene_1270 426 VNGKNIMEICDMSIKNSLDfFMNMNLTEKQEKIAKEILKEI 466 56688999999999999998778888888888777776654 PP == domain 4 score: 5.3 bits; conditional E-value: 0.016 EEE-TTSSHHHHHHH CS ArgK 34 ltGvPGaGkstlvea 48 +tGv G+Gkstl++ 23726_FusoPortal_Gene_1270 639 VTGVSGSGKSTLINS 653 8***********985 PP == domain 5 score: -1.4 bits; conditional E-value: 1.7 ---HCCCTSTTEEEEEE-----HHHHHHHHHHHHHHHHHTT-SEEEEEEESSTTHHHHHHTT-SEEEEE CS ArgK 81 lRleelavdegvfiRslpsrGalGGlaaktrevvllleaaGfDvvlietvGvGqsevdvaevvdtfvvl 149 + l+++++ ++v+i p++G +k +ev++ l G v++ie + dv++ +d+++ + 23726_FusoPortal_Gene_1270 842 TELSKMSKGNTVYILDEPTTGLHFQDIKKLLEVLNRLLEKGNTVIIIEH------NLDVIKTADHIIDI 904 4577888889999999999999998899999999888888999999984......56666666666665 PP >> Anti-TRAP Tryptophan RNA-binding attenuator protein inhibitory protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.3 0.1 0.034 17 33 52 .. 279 298 .. 274 299 .. 0.84 2 ? -1.9 0.0 6.1 3.1e+03 10 18 .. 406 414 .. 404 432 .. 0.83 3 ? 7.0 0.5 0.01 5.3 12 40 .. 739 770 .. 737 774 .. 0.85 Alignments for each domain: == domain 1 score: 5.3 bits; conditional E-value: 0.034 -TTTTTSSEEE-HHHHHHHH CS Anti-TRAP 33 CPkCsGkglipTaqGqkLld 52 CP+C+G g + + +kL++ 23726_FusoPortal_Gene_1270 279 CPECKGLGKKLEVDENKLIE 298 *****999888888888876 PP == domain 2 score: -1.9 bits; conditional E-value: 6.1 EEE-TTTTT CS Anti-TRAP 10 EtkCdaCng 18 E C+ Cng 23726_FusoPortal_Gene_1270 406 ERICKVCNG 414 677888887 PP == domain 3 score: 7.0 bits; conditional E-value: 0.01 E-TTTTTTSEETTE.........E-TTTTTSS CS Anti-TRAP 12 kCdaCngsGkiepe...eprasleCPkCsGkg 40 C+aC+g+G + e p +eC C+Gk 23726_FusoPortal_Gene_1270 739 RCEACQGAGILKIEmnfLPDVYVECEVCKGKR 770 6********7766665889999********96 PP >> FANCL_C FANCL C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.4 0.0 2.4 1.2e+03 56 65 .. 119 128 .. 112 136 .. 0.64 2 ? 3.7 0.0 0.13 67 50 62 .. 271 283 .. 264 293 .. 0.85 3 ? -1.8 0.2 6.9 3.5e+03 5 23 .. 409 426 .. 406 438 .. 0.73 4 ? 2.3 0.0 0.35 1.8e+02 41 62 .. 723 744 .. 720 751 .. 0.89 5 ? -1.1 0.0 4.1 2.1e+03 3 19 .. 761 777 .. 760 814 .. 0.75 Alignments for each domain: == domain 1 score: -0.4 bits; conditional E-value: 2.4 EE-TTT-SEE CS FANCL_C 56 GeCPyCkkki 65 +CP C+ + 23726_FusoPortal_Gene_1270 119 AHCPICHTAV 128 4566666555 PP == domain 2 score: 3.7 bits; conditional E-value: 0.13 TTT--EEE-TTT- CS FANCL_C 50 sfdvlfGeCPyCk 62 sf+ +G CP Ck 23726_FusoPortal_Gene_1270 271 SFNAPYGACPECK 283 79999*******8 PP == domain 3 score: -1.8 bits; conditional E-value: 6.9 -SSS--SS-TT-----B-- CS FANCL_C 5 CgiCyayrldsgevpdisC 23 C +C +rl ++ev ++ 23726_FusoPortal_Gene_1270 409 CKVCNGKRL-KDEVLAVTV 426 99******9.666655554 PP == domain 4 score: 2.3 bits; conditional E-value: 0.35 HHHHHSSS-TTT--EEE-TTT- CS FANCL_C 41 lrslkesrqsfdvlfGeCPyCk 62 l++ k++r sf+v G+C C+ 23726_FusoPortal_Gene_1270 723 LHGFKKGRFSFNVKGGRCEACQ 744 5678899************997 PP == domain 5 score: -1.1 bits; conditional E-value: 4.1 -S-SSS--SS-TT---- CS FANCL_C 3 veCgiCyayrldsgevp 19 veC++C +r +++++ 23726_FusoPortal_Gene_1270 761 VECEVCKGKRYNKETLD 777 68999999999776654 PP >> Zn-ribbon_8 Zinc ribbon domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.1 0.0 0.046 23 27 39 .. 118 131 .. 105 132 .. 0.84 2 ? 2.3 0.1 0.33 1.7e+02 23 34 .. 273 284 .. 251 289 .. 0.68 3 ? -1.8 0.0 6.7 3.4e+03 27 35 .. 407 416 .. 392 418 .. 0.74 4 ? -0.7 0.4 2.9 1.5e+03 7 34 .. 739 768 .. 739 773 .. 0.55 Alignments for each domain: == domain 1 score: 5.1 bits; conditional E-value: 0.046 Zn-ribbon_8 27 ta.CPeCgsevrrv 39 ta CP C+ +v+++ 23726_FusoPortal_Gene_1270 118 TAhCPICHTAVEKQ 131 566********996 PP == domain 2 score: 2.3 bits; conditional E-value: 0.33 Zn-ribbon_8 23 dapltaCPeCgs 34 ap aCPeC++ 23726_FusoPortal_Gene_1270 273 NAPYGACPECKG 284 456667****87 PP == domain 3 score: -1.8 bits; conditional E-value: 6.7 Zn-ribbon_8 27 taCPeCgs.e 35 C+ C++ + 23726_FusoPortal_Gene_1270 407 RICKVCNGkR 416 4599999855 PP == domain 4 score: -0.7 bits; conditional E-value: 2.9 Zn-ribbon_8 7 rCeeCghefevlqsis.daplta.CPeCgs 34 rCe+C+ +++ ++ + C C++ 23726_FusoPortal_Gene_1270 739 RCEACQGAGILKIEMNfLPDVYVeCEVCKG 768 678877544433344544444455777766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (946 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 929 (0.0555888); expected 334.2 (0.02) Passed bias filter: 654 (0.0391336); expected 334.2 (0.02) Passed Vit filter: 94 (0.0056247); expected 16.7 (0.001) Passed Fwd filter: 33 (0.00197463); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 33 [number of targets reported over threshold] # CPU time: 0.65u 0.34s 00:00:00.99 Elapsed: 00:00:00.46 # Mc/sec: 5978.37 // [ok]