# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1273.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1273 [L=89] Description: # 1390979 # 1391245 # -1 # ID=1_1273;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.258 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-09 37.2 1.2 3.6e-09 37.0 1.2 1.1 1 ParE_toxin ParE toxin of type II toxin-antitoxin system, par 0.0074 16.2 0.2 0.01 15.8 0.2 1.2 1 YoeB_toxin YoeB-like toxin of bacterial type II toxin-antito Domain annotation for each model (and alignments): >> ParE_toxin ParE toxin of type II toxin-antitoxin system, parDE # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 37.0 1.2 4.2e-13 3.6e-09 7 90 .] 11 87 .. 5 87 .. 0.90 Alignments for each domain: == domain 1 score: 37.0 bits; conditional E-value: 4.2e-13 HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCTTEECTCTC...CTTEEEEEEETEEEEEEEETCTTEEEEEEEEEHHH CS ParE_toxin 7 Alkdlkkiadyiardgpaakrfldaleealellaenpalgrprrelg...lkglrririgdyriiYriddeelvvvilrvlhrse 88 ++k++ k ++++ +k + d + + l++ +++++g+ + lkgl+r+ri dyr+i i+de+l++v ++ hr++ 23726_FusoPortal_Gene_1273 11 VNKKILKFDRNT------RKLLYDYINKNLKDTDDPRLHGKA----LtgnLKGLWRYRIMDYRLIVDIQDEQLIIVAVDFNHRRK 85 677777888888......************************....557899*******************************99 PP HC CS ParE_toxin 89 dy 90 +y 23726_FusoPortal_Gene_1273 86 IY 87 86 PP >> YoeB_toxin YoeB-like toxin of bacterial type II toxin-antitoxin system # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.2 1.2e-06 0.01 20 77 .. 27 79 .. 10 82 .. 0.72 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 1.2e-06 HHHHHHHHHHHHHSTTSSTT--EE-SGGGTTEEEEESSSSEEEEEEEESSEEEEEESS CS YoeB_toxin 20 lkkineLikeikRdpfeGiGkPepLkedlsglwsRRideehRlvYlveddeltilsar 77 in+ +k+++ ++G ++L+++l+glw Ri + Rl+ ++d++l i+++ 23726_FusoPortal_Gene_1273 27 YDYINKNLKDTDDPRLHG----KALTGNLKGLWRYRIMD-YRLIVDIQDEQLIIVAVD 79 344555555555555554....58*************75.89**********999875 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (89 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 403 (0.0241144); expected 334.2 (0.02) Passed bias filter: 287 (0.0171733); expected 334.2 (0.02) Passed Vit filter: 30 (0.00179512); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.21u 0.22s 00:00:00.43 Elapsed: 00:00:00.30 # Mc/sec: 862.42 // [ok]