# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1277.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1277 [L=415] Description: # 1393591 # 1394835 # -1 # ID=1_1277;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.221 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0063 16.7 0.9 4.7 7.4 0.0 3.9 3 DUF424 Protein of unknown function (DUF424) ------ inclusion threshold ------ 0.023 15.1 0.6 0.023 15.1 0.6 3.4 3 NPV_P10 Nucleopolyhedrovirus P10 protein 0.04 14.0 6.1 0.056 13.5 0.1 3.2 3 End3 Actin cytoskeleton-regulatory complex protei 0.15 11.9 0.3 0.15 11.9 0.3 3.2 3 DUF4446 Protein of unknown function (DUF4446) 0.15 12.0 6.9 0.87 9.6 0.6 3.8 3 Med9 RNA polymerase II transcription mediator com 0.41 10.4 3.4 4.9 6.9 0.3 3.5 3 DASH_Dam1 DASH complex subunit Dam1 1.1 9.2 7.7 6.4 6.7 0.3 3.4 3 FlxA FlxA-like protein 3.1 7.8 6.5 1.6 8.8 3.3 2.2 2 MnmE_helical MnmE helical domain 5.3 6.8 8.1 4.6 7.0 1.0 3.4 3 SKA2 Spindle and kinetochore-associated protein 2 7.8 7.0 16.4 2.6 8.5 0.8 4.2 4 DUF16 Protein of unknown function DUF16 Domain annotation for each model (and alignments): >> DUF424 Protein of unknown function (DUF424) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 7.4 0.0 0.0028 4.7 51 85 .. 29 76 .. 11 83 .. 0.72 2 ? 2.8 0.1 0.08 1.3e+02 11 53 .. 74 114 .. 70 130 .. 0.87 3 ? 3.8 0.1 0.039 65 9 67 .. 188 261 .. 180 297 .. 0.80 Alignments for each domain: == domain 1 score: 7.4 bits; conditional E-value: 0.0028 HHH.............EEEEEESHHHHHHHHHTTSS-GGG-EEETTEE CS DUF424 51 eka.............tiaNivgeeavvlavkaGlvdpdsVlvidgvp 85 +k + Ni+g + ++ ++ G +d+d++ +i ++ 23726_FusoPortal_Gene_1277 29 KKEqedkttevgiviqSAFNIFGSKDISSEIYQGNNDEDEIKNIYDIC 76 4445555666666677889**********************9997765 PP == domain 2 score: 2.8 bits; conditional E-value: 0.08 EEEEGGGTT-EEEETTEEEE--HHHH--EEE-HHHHHHHHHHH CS DUF424 11 avcdkellgktfkegelllnvsegfyggelaseeeaikeLeka 53 +cdk+ + ++ ++ + +nv+++ +++ + +e ++ L + 23726_FusoPortal_Gene_1277 74 DICDKN--YVKLANEIIYVNVKREELWKSIRDIQEYLSNLGIL 114 58****..*****************999999999999988766 PP == domain 3 score: 3.8 bits; conditional E-value: 0.039 EEEEEEGGG...TT-EEEETTEEEE--HHHH--EEE-HHHHHHHHHHH............EEEEEESHHHHHHH CS DUF424 9 lvavcdkel...lgktfkegelllnvsegfyggelaseeeaikeLeka............tiaNivgeeavvla 67 +++++k+l l + f+ ++ +l++++ + + +++++ ++L+++ i+N++ + +++++ 23726_FusoPortal_Gene_1277 188 AINIAQKKLyvtLRFYFDYYKDSLKLQKPYLEECIKTAKLYRESLNNLldtidkkilpflEISNLFLKSLIIKE 261 55566666333356778999999999999999999999999999999999999999999999998877777766 PP >> NPV_P10 Nucleopolyhedrovirus P10 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.0 0.1 1.4 2.4e+03 15 29 .. 13 27 .. 3 45 .. 0.53 2 ? -0.5 0.0 0.97 1.6e+03 26 40 .. 100 114 .. 81 156 .. 0.56 3 ? 15.1 0.6 1.4e-05 0.023 12 45 .. 381 414 .. 376 414 .. 0.94 Alignments for each domain: == domain 1 score: -1.0 bits; conditional E-value: 1.4 NPV_P10 15 avddkVdalqqqvdd 29 ++ + ++ +q++ d+ 23726_FusoPortal_Gene_1277 13 KLRKEIEDIQKSDDE 27 222233333333333 PP == domain 2 score: -0.5 bits; conditional E-value: 0.97 NPV_P10 26 qvddvqenlpdvtel 40 ++ d+qe l ++ l 23726_FusoPortal_Gene_1277 100 SIRDIQEYLSNLGIL 114 444444443333333 PP == domain 3 score: 15.1 bits; conditional E-value: 1.4e-05 NPV_P10 12 dikavddkVdalqqqvddvqenlpdvtelnekLd 45 ik+ ++k++ ++++++dv++nl +++e++++L+ 23726_FusoPortal_Gene_1277 381 SIKEAEEKIKIINEKIADVKKNLDEIEEISNELE 414 79****************************9986 PP >> End3 Actin cytoskeleton-regulatory complex protein END3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 0.2 0.32 5.3e+02 100 124 .. 12 36 .. 8 45 .. 0.79 2 ? 13.5 0.1 3.3e-05 0.056 71 123 .. 105 155 .. 69 173 .. 0.83 3 ? 1.1 0.2 0.22 3.6e+02 145 178 .. 376 407 .. 330 414 .. 0.53 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 0.32 End3 100 vrLkreLaeLeeklekveeeaekrk 124 +L++e++++++ +++++e+e+++ 23726_FusoPortal_Gene_1277 12 EKLRKEIEDIQKSDDEIKKEQEDKT 36 5789999999999888888887663 PP == domain 2 score: 13.5 bits; conditional E-value: 3.3e-05 End3 71 dsylsrlGvgsksekgtdfsatkgtdweevrLkreLaeLeeklekveeeaekr 123 ++yls+lG+ +e++td+s+ +++e +L +e++ L++kle +e++a+k+ 23726_FusoPortal_Gene_1277 105 QEYLSNLGIL--TENKTDYSEFTLENIEIPKLDKEINFLNNKLEFLERDARKN 155 68*****975..7999*******************************999865 PP == domain 3 score: 1.1 bits; conditional E-value: 0.22 End3 145 LkYKeeqlreleegegkskeknlksvkedietve 178 L+Y + + +e+ + + +++ +vk++++++e 23726_FusoPortal_Gene_1277 376 LNYSKSIKEAEEKIKIIN--EKIADVKKNLDEIE 407 444333222222222222..33333333333333 PP >> DUF4446 Protein of unknown function (DUF4446) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.9 0.3 9.1e-05 0.15 48 96 .. 5 53 .. 1 58 [. 0.92 2 ? -1.7 0.1 1.5 2.4e+03 29 54 .. 119 145 .. 76 166 .. 0.54 3 ? 3.0 0.6 0.049 82 42 73 .. 377 408 .. 355 414 .. 0.56 Alignments for each domain: == domain 1 score: 11.9 bits; conditional E-value: 9.1e-05 DUF4446 48 kekleeveelkeeneelekrieeleeklkkslqkvglvrYdAFeemGgd 96 + ++ +e+l++e e+++k+ +e++++++ + ++vg+v AF+ G++ 23726_FusoPortal_Gene_1277 5 YTLVHYIEKLRKEIEDIQKSDDEIKKEQEDKTTEVGIVIQSAFNIFGSK 53 5678889*************************************99996 PP == domain 2 score: -1.7 bits; conditional E-value: 1.5 DUF4446 29 kkykklmkgk.dgksleellkekleev 54 ++y++++ ++ + +l++ ++ +++ 23726_FusoPortal_Gene_1277 119 TDYSEFTLENiEIPKLDKEINFLNNKL 145 333333332223333333333333333 PP == domain 3 score: 3.0 bits; conditional E-value: 0.049 DUF4446 42 sleellkekleeveelkeeneelekrieelee 73 + + +ke e+++ ++e+ ++++k+++e+ee 23726_FusoPortal_Gene_1277 377 NYSKSIKEAEEKIKIINEKIADVKKNLDEIEE 408 44445555555555555555555555555544 PP >> Med9 RNA polymerase II transcription mediator complex subunit 9 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 0.2 0.37 6.2e+02 43 57 .. 16 30 .. 4 39 .. 0.56 2 ? 2.7 0.0 0.074 1.2e+02 18 36 .. 128 146 .. 95 159 .. 0.79 3 ? 9.6 0.6 0.00052 0.87 17 51 .. 377 412 .. 358 414 .. 0.83 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 0.37 Med9 43 relpgidrsveeqea 57 +e+++i++s +e ++ 23726_FusoPortal_Gene_1277 16 KEIEDIQKSDDEIKK 30 344455555555444 PP == domain 2 score: 2.7 bits; conditional E-value: 0.074 Med9 18 nlsskdletktgelrhkLk 36 n+++ +l++++++l++kL+ 23726_FusoPortal_Gene_1277 128 NIEIPKLDKEINFLNNKLE 146 689999***********96 PP == domain 3 score: 9.6 bits; conditional E-value: 0.00052 Med9 17 p.nlsskdletktgelrhkLkkarelirelpgidrs 51 + ++s+k+ e k+ ++ k+ +++ ++e+++i+ 23726_FusoPortal_Gene_1277 377 NySKSIKEAEEKIKIINEKIADVKKNLDEIEEISNE 412 25699***************************9975 PP >> DASH_Dam1 DASH complex subunit Dam1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.7 0.1 0.12 2.1e+02 4 30 .. 3 29 .. 1 33 [. 0.83 2 ? -0.8 0.0 0.77 1.3e+03 6 28 .. 95 117 .. 93 123 .. 0.80 3 ? 6.9 0.3 0.0029 4.9 2 29 .. 386 413 .. 385 414 .. 0.92 Alignments for each domain: == domain 1 score: 1.7 bits; conditional E-value: 0.12 DASH_Dam1 4 afaeLaDsletLdknledLqqihesLs 30 +f L +e+L+k +ed+q+ +++++ 23726_FusoPortal_Gene_1277 3 KFYTLVHYIEKLRKEIEDIQKSDDEIK 29 677888889999999999999988876 PP == domain 2 score: -0.8 bits; conditional E-value: 0.77 DASH_Dam1 6 aeLaDsletLdknledLqqihes 28 +eL +s++++++ l++L ++e+ 23726_FusoPortal_Gene_1277 95 EELWKSIRDIQEYLSNLGILTEN 117 57888999999999999888877 PP == domain 3 score: 6.9 bits; conditional E-value: 0.0029 DASH_Dam1 2 epafaeLaDsletLdknledLqqihesL 29 e++++ +++++++++knl+++++i+++L 23726_FusoPortal_Gene_1277 386 EEKIKIINEKIADVKKNLDEIEEISNEL 413 578999*******************998 PP >> FlxA FlxA-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.7 0.3 0.0038 6.4 17 45 .. 9 38 .. 2 44 .. 0.74 2 ? -0.7 0.0 0.78 1.3e+03 18 39 .. 130 151 .. 115 159 .. 0.79 3 ? 4.3 0.4 0.022 37 13 37 .. 383 407 .. 370 413 .. 0.58 Alignments for each domain: == domain 1 score: 6.7 bits; conditional E-value: 0.0038 FlxA 17 sqiasLqkQiknlqkqLkelses.deltke 45 +i++L+k+i+++qk+ +e++++ +++t+e 23726_FusoPortal_Gene_1277 9 HYIEKLRKEIEDIQKSDDEIKKEqEDKTTE 38 468888888888888888887775555544 PP == domain 2 score: -0.7 bits; conditional E-value: 0.78 FlxA 18 qiasLqkQiknlqkqLkelses 39 +i +L k+i+ l+++L+ l + 23726_FusoPortal_Gene_1277 130 EIPKLDKEINFLNNKLEFLERD 151 5778899999999999888777 PP == domain 3 score: 4.3 bits; conditional E-value: 0.022 FlxA 13 sgsasqiasLqkQiknlqkqLkels 37 ++ +++i+ +++ i++++k L+e+ 23726_FusoPortal_Gene_1277 383 KEAEEKIKIINEKIADVKKNLDEIE 407 3445555555555555555555554 PP >> MnmE_helical MnmE helical domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.0 0.1 1.9 3.2e+03 122 133 .. 12 24 .. 6 71 .. 0.61 2 ? 8.8 3.3 0.00093 1.6 29 97 .. 96 303 .. 87 413 .. 0.63 Alignments for each domain: == domain 1 score: -2.0 bits; conditional E-value: 1.9 xxxxxxxxxxx.x RF MnmE_helical 122 eeLeeaikele.l 133 e+L+++i++++ + 23726_FusoPortal_Gene_1277 12 EKLRKEIEDIQkS 24 3444444333212 PP == domain 2 score: 8.8 bits; conditional E-value: 0.00093 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxx............ RF MnmE_helical 29 elskkikelrekllellaeleaaiDFpeedleelseeelaekleelkeelekllatakrgellr...eGik............ 96 el k i++++e l +l ++ e + D++e le+++ +l ++++ l+++le l ++a++ + eG+ 23726_FusoPortal_Gene_1277 96 ELWKSIRDIQEYLSNLGILTENKTDYSEFTLENIEIPKLDKEINFLNNKLEFLERDARKNDIEYgkyEGFGttlwnrlasple 178 67789***********************99********************999988887666433335555999999999999 PP ................................................................................... RF MnmE_helical 97 ................................................................................... 96 23726_FusoPortal_Gene_1277 179 svkaerkleainiaqkklyvtlrfyfdyykdslklqkpyleeciktaklyreslnnlldtidkkilpfleisnlflksliike 261 99999999999999999999999999888877777777777777777777777777777777777777777777777777776 PP .........................................x RF MnmE_helical 97 .........................................D 97 23726_FusoPortal_Gene_1277 262 lvkenklnenmslkdiespksignlkdtkyniyytffenlfH 303 666666666666665555555554444444444444444440 PP >> SKA2 Spindle and kinetochore-associated protein 2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.0 1.0 0.0027 4.6 42 77 .. 6 41 .. 3 71 .. 0.81 2 ? 2.3 0.1 0.075 1.3e+02 26 66 .. 66 106 .. 65 111 .. 0.89 3 ? -0.7 0.3 0.67 1.1e+03 46 65 .. 388 407 .. 378 414 .. 0.59 Alignments for each domain: == domain 1 score: 7.0 bits; conditional E-value: 0.0027 SKA2 42 kLlerlkkvkeelqaLkeqceellaekkelidkirt 77 +L++ ++k+++e++ +++ +e+ +e+++ ++++ 23726_FusoPortal_Gene_1277 6 TLVHYIEKLRKEIEDIQKSDDEIKKEQEDKTTEVGI 41 79**************************98877655 PP == domain 2 score: 2.3 bits; conditional E-value: 0.075 SKA2 26 ekefqqsypdnaeNpvkLlerlkkvkeelqaLkeqceella 66 e+e++++y+ +N vkL +++ v+ + ++L + ++++++ 23726_FusoPortal_Gene_1277 66 EDEIKNIYDICDKNYVKLANEIIYVNVKREELWKSIRDIQE 106 6789999998889**********999999999999999875 PP == domain 3 score: -0.7 bits; conditional E-value: 0.67 SKA2 46 rlkkvkeelqaLkeqceell 65 ++k ++e+++ +k++++e+ 23726_FusoPortal_Gene_1277 388 KIKIINEKIADVKKNLDEIE 407 45555555666665555554 PP >> DUF16 Protein of unknown function DUF16 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.8 0.2 0.19 3.2e+02 48 74 .. 12 35 .. 2 52 .. 0.49 2 ? -0.2 0.2 0.77 1.3e+03 47 64 .. 128 145 .. 67 163 .. 0.55 3 ? 5.4 0.4 0.014 24 13 60 .. 191 242 .. 178 277 .. 0.82 4 ? 8.5 0.8 0.0016 2.6 28 103 .. 323 407 .. 310 411 .. 0.62 Alignments for each domain: == domain 1 score: 1.8 bits; conditional E-value: 0.19 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS DUF16 48 eqinkleqkvekqgekikelkveqkaq 74 e++ k + ++k +++i k+eq+ + 23726_FusoPortal_Gene_1277 12 EKLRKEIEDIQKSDDEI---KKEQEDK 35 33333333333333333...3333333 PP == domain 2 score: -0.2 bits; conditional E-value: 0.77 .HHHHHHHHHHHHHHHHH CS DUF16 47 geqinkleqkvekqgeki 64 + +i kl ++++ +++k+ 23726_FusoPortal_Gene_1277 128 NIEIPKLDKEINFLNNKL 145 222223333333333332 PP == domain 3 score: 5.4 bits; conditional E-value: 0.014 .X.XTTB-BHH.HHHHB-.....BHHHHHHHHHHHH...HHHHHHHHHHHHH CS DUF16 13 iPvkteYVTrk.qlnefkds...nkqrLkkieakvdklgeqinkleqkvekq 60 i +k+ YVT + ++ +kds k L++ ++ + e++n+l ++++k+ 23726_FusoPortal_Gene_1277 191 IAQKKLYVTLRfYFDYYKDSlklQKPYLEECIKTAKLYRESLNNLLDTIDKK 242 567889***77368889*9988777888888888888888888888888875 PP == domain 4 score: 8.5 bits; conditional E-value: 0.0016 B-....BHHHHHHHHHHHH...............HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHH CS DUF16 28 fkds..nkqrLkkieakvd............klgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkin 96 fk++ +L++ie k++ +i+ e++ + ik l ++++++ +e +++i e +++++ 23726_FusoPortal_Gene_1277 323 FKNDylEGDELQDIESKIKdsaktypefgtfDWIISIDTSEEEYIYSAKDIKFL-----NYSKSIKEAEEKIKIINEKIADVK 400 666666667888888888877777655555533334444444444444444333.....334455566888888888888888 PP HHHHHHC CS DUF16 97 kRlDsie 103 k lD+ie 23726_FusoPortal_Gene_1277 401 KNLDEIE 407 8888887 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (415 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1832 (0.109622); expected 334.2 (0.02) Passed bias filter: 560 (0.0335089); expected 334.2 (0.02) Passed Vit filter: 60 (0.00359023); expected 16.7 (0.001) Passed Fwd filter: 22 (0.00131642); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.33 # Mc/sec: 3655.81 // [ok]