# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1305.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1305 [L=435] Description: # 1418443 # 1419747 # -1 # ID=1_1305;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.281 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-108 362.8 0.4 2.7e-108 362.5 0.4 1.1 1 GIDA Glucose inhibited division protein A 1.1e-07 31.2 0.1 6.5e-05 22.1 0.1 2.2 2 FAD_binding_2 FAD binding domain 7.4e-07 28.6 0.6 5.8e-06 25.7 0.3 2.3 2 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase 2e-06 27.5 0.0 0.00036 20.1 0.0 3.1 3 DAO FAD dependent oxidoreductase 4.7e-06 26.6 0.2 1.6e-05 25.0 0.2 1.9 2 NAD_binding_8 NAD(P)-binding Rossmann-like domain 9.5e-05 21.7 0.2 0.01 15.0 0.0 2.5 2 Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase 0.00014 21.7 0.6 0.00038 20.3 0.0 2.0 3 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding d 0.00021 21.7 0.1 0.00096 19.6 0.0 2.2 2 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase 0.00022 20.5 0.1 0.00047 19.4 0.1 1.5 1 Thi4 Thi4 family 0.00051 18.8 0.5 0.0042 15.7 0.2 2.3 2 HI0933_like HI0933-like protein 0.0017 17.6 0.0 0.0033 16.7 0.0 1.4 1 FAD_binding_3 FAD binding domain 0.0064 15.7 0.0 0.013 14.7 0.0 1.4 1 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain 0.0073 15.6 0.4 0.013 14.8 0.2 1.5 2 FAD_oxidored FAD dependent oxidoreductase ------ inclusion threshold ------ 0.057 12.4 0.0 0.088 11.7 0.0 1.3 1 Lycopene_cycl Lycopene cyclase protein 0.096 13.0 1.1 0.53 10.6 0.8 2.6 2 NAD_binding_7 Putative NAD(P)-binding Domain annotation for each model (and alignments): >> GIDA Glucose inhibited division protein A # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 362.5 0.4 2.4e-111 2.7e-108 1 392 [] 4 368 .. 4 368 .. 0.98 Alignments for each domain: == domain 1 score: 362.5 bits; conditional E-value: 2.4e-111 CEEEE-SSHHHHHHHHHHHHTT--EEEE.........ES-GGGTT--SSSSEEE-T....THHHHHHHHHHHT-SHHHHHHHH CS GIDA 1 dviViGgGhAGceAAlaaarlGakvlLi.........thkldtiaelsCnpsiggi....akgllvrEidalggliikaadka 70 +viV+G+G+AG+eAA+++a++G+kv+L+ +h+ d + el+C++s+g++ a+gl+++E++ lg+l+i++adk+ 23726_FusoPortal_Gene_1305 4 EVIVVGAGLAGSEAAYQLAKRGIKVKLYemkakkktpAHSKDYFSELVCSNSLGSDslenASGLMKEELRILGSLLINIADKN 86 59********************************************************************************* PP EEEEEEESTTS-CCC-EEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT CS GIDA 71 giqfrilNrskGpavralraqvdrelyskevteklenepnleiieeeveeliveekkvkgvvtedgetikakavviatGtflk 153 ++ pa++al +vdr+ +s+evt+ l+n++n+eiieee +e+ + ++k+v+ia+G+ 23726_FusoPortal_Gene_1305 87 RV----------PAGQAL--AVDRDGFSEEVTKILKNTENIEIIEEEFTEI-P----------------NDKIVIIASGP--- 137 **..........******..*******************************.6................699********... PP -EEEETTEEEESSCTTC--B-THHHHHHH.TT--EEEEEEEE--EEEGGGS-TTTSEEE---SS-B-SSSSSSSTCG----EE CS GIDA 154 gkihigekelsaGrlgeltseglseslke.lgfellrlktgtppridkesidfskleeqsgdkegeefsylnkplnkeqvecf 235 lts++l e++ e +g+e l+++++++p+++ esid++k++ qs++ +g + +y+n+p+nke++ +f 23726_FusoPortal_Gene_1305 138 -----------------LTSDKLFEKISEiTGEESLYFYDAAAPIVTFESIDMNKAYFQSRYGKG-DGEYINCPMNKEEYYNF 202 .................*********************************************656.68*************** PP EEE--HHHHHHHHCTCCC-T.T----..B--S-CCC-SSTCC...CCCCST.....T-S--EEEEEESSTT--EEEEET---- CS GIDA 236 ltatneathkiikenlkksaklfegc..ieelgprycpsied...kivrla.....dkeshqvfLepegleteliylvgfsts 308 ++++++a+ +++k+++k+ klf+ c ie+++ +++++ + k+ +l + ++++v+L+++++e++l+++vgf+t+ 23726_FusoPortal_Gene_1305 203 YNELIKAERAELKNFEKE--KLFDACmpIEKIAMSGEKTMTFgplKPKGLInprteKMDYAVVQLRQDDKEGKLYNIVGFQTN 283 *****************9..89********************99999999899999999************************ PP S-HHHHHHHHTTSTT-TT--EEE--EEEEEEEE-GGGB-T.TSBBSSSBTEEE-CGGGTB-SHHHHHHHHHHHHHHHHHHHCT CS GIDA 309 lpeevqkevlrsipGLenaeivrpGyaieydyvdprqlln.tLetkkvkgLflAGqinGteGYeEaaaqGllAGinaarkakg 390 l++++qk+v+++ipGLenae++r+G++++++++++++ll+ tL++k+++++++AGqi+G eGY+ a+a+G+ ++n+a+++++ 23726_FusoPortal_Gene_1305 284 LKFGEQKRVFSMIPGLENAEFIRYGVMHRNTFINSTKLLDkTLRLKNRDNIYFAGQITGGEGYVTAIATGMYVAMNVANRLEN 366 ***************************************99***************************************999 PP S- CS GIDA 391 ke 392 k+ 23726_FusoPortal_Gene_1305 367 KK 368 85 PP >> FAD_binding_2 FAD binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.1 0.1 5.8e-08 6.5e-05 2 33 .. 5 36 .. 4 44 .. 0.87 2 ! 7.0 0.0 0.0022 2.4 261 334 .. 63 151 .. 55 200 .. 0.84 Alignments for each domain: == domain 1 score: 22.1 bits; conditional E-value: 5.8e-08 EEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS FAD_binding_2 2 viViGsGlAGLaAAleaaeaGlkvavvekeqe 33 viV+G+GlAG AA+++a++G kv + e + + 23726_FusoPortal_Gene_1305 5 VIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAK 36 9***********************99887665 PP == domain 2 score: 7.0 bits; conditional E-value: 0.0022 TTTBB--THHHHTT-EEE-.TTSSBTH...GGGS-HHHHHHHHH.HHHHTTTS...........CCBEEEE-TT.SSHHHHHH CS FAD_binding_2 261 gsgiLitealrgeGgilvd.kdGrrFm...nelasrdvvsrailekeiaeggs...........eanvyldashgldaeglea 328 ++ +L++e+lr G++l++ +d +r + + + +rd +s+ +++ ++ ++ +++++++as+ l +++l + 23726_FusoPortal_Gene_1305 63 NASGLMKEELRILGSLLINiADKNRVPagqALAVDRDGFSEEVTKILKNTENIeiieeefteipNDKIVIIASGPLTSDKLFE 145 44568********************99*9966668888888888777776666777888888888999999999999999999 PP HSHHHH CS FAD_binding_2 329 tleain 334 ++ +i 23726_FusoPortal_Gene_1305 146 KISEIT 151 999875 PP >> Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.7 0.3 5.2e-09 5.8e-06 2 106 .. 4 136 .. 3 163 .. 0.58 2 ? -0.1 0.0 0.37 4.1e+02 257 280 .. 321 345 .. 301 355 .. 0.74 Alignments for each domain: == domain 1 score: 25.7 bits; conditional E-value: 5.2e-09 SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHHHHHHSHHHHHHHHHHHHHHHE......................... CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxx......................... RF Pyr_redox_2 2 dvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgaaedaei......................... 55 +v+v+G+G AG +aa +la+ g+kv l+e +++ + + + ++ ++ + ++ 23726_FusoPortal_Gene_1305 4 EVIVVGAGLAGSEAAYQLAKRGIKVKLYEmkakKKTPAHSKDYFSELVCSNSLGSDSLenasglmkeelrilgslliniadkn 86 79**************************9887544445555555555666666666633333444433333444444444333 PP ....HHHHHHHHHHHHHHH..........HTTEEEEECEEEEEETCEEETCEEEEEESE.EEE--- CS ....xxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF Pyr_redox_2 56 ....evvkklnqgielllg..........eevvkidpgkkkvklekkkegkeekiaydk.lviAtG 106 + + eev+ki ++++++++ + ++ ++i dk ++iA+G 23726_FusoPortal_Gene_1305 87 rvpaG-------------QalavdrdgfsEEVTKILKNTENIEIIE---EEFTEIPNDKiVIIASG 136 33221.............0222223344345666666666666643...33445555441556777 PP == domain 2 score: -0.1 bits; conditional E-value: 0.37 E--TTSBES.STTEEE-GGGCTETT CS xxxxxxxxx.xxxxxxxxxxxxxxx RF Pyr_redox_2 257 vvdeflrts.vpgiyaiGDvaggkg 280 + d++lr + ++iy +G ++gg+g 23726_FusoPortal_Gene_1305 321 LLDKTLRLKnRDNIYFAGQITGGEG 345 5788998755*********994433 PP >> DAO FAD dependent oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 0.0 3.2e-07 0.00036 2 29 .. 5 34 .. 4 81 .. 0.85 2 ? -0.0 0.0 0.44 4.9e+02 168 207 .. 104 143 .. 92 159 .. 0.59 3 ? 2.6 0.0 0.068 76 292 350 .. 292 357 .. 289 358 .. 0.72 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 3.2e-07 EEEECTSHHHHHHHHHHHHTT..EEEEESS CS DAO 2 vviiGGGiiGlstAyeLarrg..Vtllekg 29 v+++G+G +G+ +Ay+La+rg V l+e++ 23726_FusoPortal_Gene_1305 5 VIVVGAGLAGSEAAYQLAKRGikVKLYEMK 34 9**************************987 PP == domain 2 score: -0.0 bits; conditional E-value: 0.44 CEEEEEEEETCEEEEEEECT.EEEEEEEE.EEE--GGGHH.HH CS DAO 168 evtgleeedgkvwgverttp.gendaada.vVnaaGawsd.ll 207 evt++ ++ + + + +++ e+ d+ v++a G+ ++ +l 23726_FusoPortal_Gene_1305 104 EVTKILKNTENIEII--EEEfTEIPN-DKiVIIASGPLTSdKL 143 566653322333444..222222213.447*******987644 PP == domain 3 score: 2.6 bits; conditional E-value: 0.068 HHHHSGGGCGEEEEEEEEEE..E.TTSSEEEEEEE...TEEEEEEEEEC.TTTHHHHHHHHHHHHH CS DAO 292 lrklfPqlgdvlrkwaGlrp..l.pdglpligetp...gvkglylatGh.sghGltlapatGklla 350 + ++P+l++ + ++G++ + + l+++t +++y+a + +g G+ +a+atG ++a 23726_FusoPortal_Gene_1305 292 VFSMIPGLENAEFIRYGVMHrnTfINSTKLLDKTLrlkNRDNIYFAGQItGGEGYVTAIATGMYVA 357 56677888777777777777422335566666644775566999998889*************998 PP >> NAD_binding_8 NAD(P)-binding Rossmann-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.0 0.2 1.4e-08 1.6e-05 1 28 [. 7 34 .. 7 36 .. 0.95 2 ? -3.2 0.0 9.1 1e+04 24 43 .. 82 101 .. 80 105 .. 0.78 Alignments for each domain: == domain 1 score: 25.0 bits; conditional E-value: 1.4e-08 EE--SHHHHHHHHHHHCCTEEEEEE-SS CS NAD_binding_8 1 IVGaGlsGlaaAylLakagfdvllfekr 28 +VGaGl+G+ aAy Lak+g++v l+e+ 23726_FusoPortal_Gene_1305 7 VVGAGLAGSEAAYQLAKRGIKVKLYEMK 34 8*************************86 PP == domain 2 score: -3.2 bits; conditional E-value: 9.1 EE-SSSSSSGGG-EECETTC CS NAD_binding_8 24 lfekrdrlGGraasyevpgv 43 + +k++ + G+a ++++g+ 23726_FusoPortal_Gene_1305 82 IADKNRVPAGQALAVDRDGF 101 56899999999999888876 PP >> Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 0.0 9.2e-06 0.01 164 201 .. 2 39 .. 1 55 [. 0.85 2 ? 4.1 0.0 0.02 22 231 278 .. 101 149 .. 83 163 .. 0.82 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 9.2e-06 Pyr_redox_3 164 gqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiea 201 +++v+V+G++ + +aA++l+++g +V+++ +++ ++ 23726_FusoPortal_Gene_1305 2 EKEVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKKKT 39 589**************************998876544 PP == domain 2 score: 4.1 bits; conditional E-value: 0.02 Pyr_redox_3 231 fnaevkeikekeeeykvktedgkkveskddvvlatGykpdlsflkk.sl 278 f +ev++i +++e++++ +e+ +++ +++ v++a G + ++++k s 23726_FusoPortal_Gene_1305 101 FSEEVTKILKNTENIEIIEEEFTEIPNDKIVIIASGPLTSDKLFEKiSE 149 77899**********************999**99998888777776443 PP >> 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.3 0.0 3.4e-07 0.00038 2 38 .. 5 41 .. 4 69 .. 0.83 2 ? -3.4 0.0 6.3 7e+03 145 166 .. 129 150 .. 122 152 .. 0.77 3 ? -2.5 0.1 3.3 3.7e+03 77 101 .. 395 420 .. 349 424 .. 0.52 Alignments for each domain: == domain 1 score: 20.3 bits; conditional E-value: 3.4e-07 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHH CS 3HCDH_N 2 vaviGaGtmGagiaavfasagleVvlvdiseealeka 38 v v+GaG+ G++ a+++a++g++V+l+++++++ + a 23726_FusoPortal_Gene_1305 5 VIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKKKTPA 41 88**************************987765444 PP == domain 2 score: -3.4 bits; conditional E-value: 6.3 -EEEEEE-TT--HHHHHHHHHH CS 3HCDH_N 145 kLvEvvrgekTseetvatvvel 166 k+v + +g+ Ts++ ++++ e+ 23726_FusoPortal_Gene_1305 129 KIVIIASGPLTSDKLFEKISEI 150 6777888999999999988765 PP == domain 3 score: -2.5 bits; conditional E-value: 3.3 HC-SE.EEE-S-SSHHHHHHHHHHHH CS 3HCDH_N 77 vdadl.viEavvEnlelKrkvfaele 101 ++a++ +i + En++ K++ +++l+ 23726_FusoPortal_Gene_1305 395 MGANFgIIRSLDENIRDKKEKYRKLS 420 34444366677778888887777776 PP >> Pyr_redox Pyridine nucleotide-disulphide oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.6 0.0 8.6e-07 0.00096 2 33 .. 5 36 .. 4 50 .. 0.91 2 ? -2.3 0.1 5.6 6.3e+03 42 60 .. 101 120 .. 97 124 .. 0.72 Alignments for each domain: == domain 1 score: 19.6 bits; conditional E-value: 8.6e-07 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS Pyr_redox 2 vvvvGgGyiglElAgalaelgkkVtvversdk 33 v+vvG+G+ g E+A la+ g kV++ e++ k 23726_FusoPortal_Gene_1305 5 VIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAK 36 89**************************9876 PP == domain 2 score: -2.3 bits; conditional E-value: 5.6 HHHHHHHHHHHT.TEEEECS CS Pyr_redox 42 askilqeklekn.gievlln 60 +s+++++ l++ +ie++ + 23726_FusoPortal_Gene_1305 101 FSEEVTKILKNTeNIEIIEE 120 56778888877668888765 PP >> Thi4 Thi4 family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.4 0.1 4.2e-07 0.00047 16 50 .. 1 34 [. 1 39 [. 0.93 Alignments for each domain: == domain 1 score: 19.4 bits; conditional E-value: 4.2e-07 TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailers 50 +e +v++vGaG +G aay lak+ ++kv + e + 23726_FusoPortal_Gene_1305 1 MEKEVIVVGAGLAGSEAAYQLAKR-GIKVKLYEMK 34 6899********************.****999976 PP >> HI0933_like HI0933-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.7 0.2 3.8e-06 0.0042 2 34 .. 4 36 .. 3 39 .. 0.92 2 ? 0.3 0.0 0.18 2e+02 364 387 .. 320 343 .. 316 359 .. 0.78 Alignments for each domain: == domain 1 score: 15.7 bits; conditional E-value: 3.8e-06 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS HI0933_like 2 dviviGgGaAGlmaAisaakrgakVlllekakk 34 +viv+G+G AG aA ++akrg kV l+e + k 23726_FusoPortal_Gene_1305 4 EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAK 36 79**************************98754 PP == domain 2 score: 0.3 bits; conditional E-value: 0.18 GB-TTT-BBTTSTTEEE-GGGBSE CS HI0933_like 364 evssktmeskkvpgLffaGEvlDv 387 ++ kt+ k+ +++faG + 23726_FusoPortal_Gene_1305 320 KLLDKTLRLKNRDNIYFAGQITGG 343 66789**************88544 PP >> FAD_binding_3 FAD binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 0.0 2.9e-06 0.0033 3 35 .. 4 36 .. 2 44 .. 0.86 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 2.9e-06 EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS FAD_binding_3 3 dVlIVGaGpaGlmlallLseaGvrvvlvekhst 35 +V++VGaG+aG +a L+++G++v l e ++ 23726_FusoPortal_Gene_1305 4 EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAK 36 8***********************988776555 PP >> AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.0 1.1e-05 0.013 30 69 .. 4 43 .. 2 87 .. 0.85 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 1.1e-05 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqles 69 +v+v+G+G aG +A+ ++ g kV++++++++++ +s 23726_FusoPortal_Gene_1305 4 EVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKKKTPAHS 43 69****************************9999877665 PP >> FAD_oxidored FAD dependent oxidoreductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.8 0.2 1.1e-05 0.013 1 29 [. 4 32 .. 4 36 .. 0.92 2 ? -3.4 0.0 3.8 4.3e+03 212 247 .. 208 245 .. 185 304 .. 0.60 Alignments for each domain: == domain 1 score: 14.8 bits; conditional E-value: 1.1e-05 FAD_oxidored 1 DvvVvGGgpaGvaAAiaAaraGakvlLve 29 +v+VvG+g+aG AA++ a++G kv L e 23726_FusoPortal_Gene_1305 4 EVIVVGAGLAGSEAAYQLAKRGIKVKLYE 32 59***********************9977 PP == domain 2 score: -3.4 bits; conditional E-value: 3.8 FAD_oxidored 212 kpegydparyelarvfea..klskgklpgektdvnwpr 247 k+e+ + +++e +++f+a ++k ++gekt++ p 23726_FusoPortal_Gene_1305 208 KAERAELKNFEKEKLFDAcmPIEKIAMSGEKTMTFGPL 245 45555556666666666666566666666666555543 PP >> Lycopene_cycl Lycopene cyclase protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.0 7.9e-05 0.088 2 36 .. 5 37 .. 4 64 .. 0.87 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 7.9e-05 Lycopene_cycl 2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36 v+v+GaG+Ag A +l ak g+kv l e ++ 23726_FusoPortal_Gene_1305 5 VIVVGAGLAGSEAAYQL--AKRGIKVKLYEMKAKK 37 9****************..9******998876655 PP >> NAD_binding_7 Putative NAD(P)-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.8 0.00048 0.53 7 44 .. 2 39 .. 1 228 [. 0.85 2 ? -1.6 0.0 3 3.4e+03 57 95 .. 349 388 .. 304 392 .. 0.59 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 0.00048 NAD_binding_7 7 gkkvlvvGgGevAarkvrklleagakvtvvapevkeel 44 +k+v+vvG+G + + +++l++ g kv+++ + k+++ 23726_FusoPortal_Gene_1305 2 EKEVIVVGAGLAGSEAAYQLAKRGIKVKLYEMKAKKKT 39 689**************************988842222 PP == domain 2 score: -1.6 bits; conditional E-value: 3 NAD_binding_7 57 kdlegadlviaatddrelner.iaeaakarrilvnvadkp 95 + +g+ +++ + ++ e +++ i e++ + ++ vn +++ 23726_FusoPortal_Gene_1305 349 AIATGMYVAMNVANRLENKKEfILEDISEIGAIVNYITEE 388 3344455555555444444445777777777788777665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (435 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 605 (0.0362015); expected 334.2 (0.02) Passed bias filter: 386 (0.0230972); expected 334.2 (0.02) Passed Vit filter: 64 (0.00382958); expected 16.7 (0.001) Passed Fwd filter: 15 (0.000897559); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 15 [number of targets reported over threshold] # CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.34 # Mc/sec: 3719.29 // [ok]