# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1317.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1317 [L=273] Description: # 1430536 # 1431354 # 1 # ID=1_1317;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.256 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-14 52.2 1.8 7.5e-14 51.5 0.4 2.1 2 WGR WGR domain Domain annotation for each model (and alignments): >> WGR WGR domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.5 0.4 4.5e-18 7.5e-14 5 78 .. 23 88 .. 19 90 .. 0.91 2 ? -2.1 0.0 0.23 3.8e+03 53 65 .. 184 196 .. 177 199 .. 0.75 Alignments for each domain: == domain 1 score: 51.5 bits; conditional E-value: 4.5e-18 EEEEETTTTEEEEEEEEEEE.-TTS-EEEEEE-S-TTS----EEEEESSHHHHHHHHHHHHHHHHSS-STTGGG CS WGR 5 leqtdiarnsnkFYkiqlleddlfggyslfvrWGRiGtrGqtklksfdseeeAikefeklfaeKtkkgyeeree 78 l++ + ++s+kF+ +++ +++++v++G+ G +G++++k+fds+e++ ke+ kl+++K+kkgyee e 23726_FusoPortal_Gene_1317 23 LHFKN--EKSDKFWFVET------LDSEMMVNYGKTGATGKYEIKEFDSSEACEKEALKLINSKKKKGYEEFPE 88 56666..89*********......5689******************************************9766 PP == domain 2 score: -2.1 bits; conditional E-value: 0.23 SHHHHHHHHHHHH CS WGR 53 seeeAikefeklf 65 ee+A++ef+ l+ 23726_FusoPortal_Gene_1317 184 LEEQAKSEFNGLL 196 5789999998776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (273 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 595 (0.0356032); expected 334.2 (0.02) Passed bias filter: 300 (0.0179512); expected 334.2 (0.02) Passed Vit filter: 28 (0.00167544); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.24u 0.23s 00:00:00.47 Elapsed: 00:00:00.31 # Mc/sec: 2560.06 // [ok]