# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1318.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1318 [L=426] Description: # 1431396 # 1432673 # -1 # ID=1_1318;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.267 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.2e-144 480.9 40.1 3.8e-144 480.7 40.1 1.0 1 Branch_AA_trans Branched-chain amino acid transport protein Domain annotation for each model (and alignments): >> Branch_AA_trans Branched-chain amino acid transport protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 480.7 40.1 2.3e-148 3.8e-144 2 427 .. 4 421 .. 3 423 .. 0.98 Alignments for each domain: == domain 1 score: 480.7 bits; conditional E-value: 2.3e-148 Branch_AA_trans 2 kkdvlviglmlFalffGAgNlIfPpllGlaagenvlvailgFlltgvglpllgiiavaksgkglkelaervskvfallfaiil 84 +kdvl++g++lFa++fGAgNlIfPp+lG+++++++++++l+F++tgvg+p+lgi++v+++g+g+k++a+rvs++f+++faii 23726_FusoPortal_Gene_1318 4 TKDVLLTGFALFAMLFGAGNLIFPPMLGYETSSSWTLTMLAFIITGVGFPFLGILSVSIAGNGIKDFANRVSPTFSKIFAIIS 86 799******************************************************************************** PP Branch_AA_trans 85 yLsiGplfaiPRtgavafevavapllseeekalalliytlvffaialllslkpsklvdrvGkiLtPvllvlllilvvaaiikp 167 +L+iGp++aiPRtga+a+e+++ + + e++++++iy +++f i++l+sl+++k+++rvGkiLtP+ll+ll+++++++i+ + 23726_FusoPortal_Gene_1318 87 ILAIGPMLAIPRTGATAYEITFLYNGM--ESPIYKYIYLICYFGIVILFSLRANKVIERVGKILTPILLILLFLIIIKGIFFA 167 ***********************9888..9***************************************************** PP Branch_AA_trans 168 lgeikeaskayksaplikGfleGYlTmDalaslaFgiviveaikskgvkekkevikatikagliaavlLalvYlalallGats 250 + ++k ++ + ++++kGfleGY+TmD++as+a++ +i++aik+ ++ ++k+ ++ +ikagl+a++ Lal+Y +al+Ga++ 23726_FusoPortal_Gene_1318 168 NLSVKPDV---YPHAFKKGFLEGYQTMDTIASIAYAGIILKAIKNGRNLTQKQEFSFLIKAGLVAILSLALIYGGFALVGAKM 247 ***99988...599********************************************************************* PP Branch_AA_trans 251 aslakeaengaeiLskasqelfGslGsllLaviitlacLtTavGLitavseyFskllpklsYkklvviftlisfllanlGltk 333 +s+ ++++++e+L k++++l+G++G+l+La++++ acLtTa+GLi++v+e+Fs++++ ++Y+k+v+++ +isfll++lG+++ 23726_FusoPortal_Gene_1318 248 HSV-LATNDKIELLVKTTSYLLGNYGNLVLAICVAGACLTTAIGLIATVGEFFSSITS-FKYEKIVAFTVIISFLLSILGVES 328 *87.6899*************************************************9.************************ PP Branch_AA_trans 334 iiavsvPvLvllYPlaialivlsllekllkskkvvykltllvtlivalldalkalkikievlnsllkvlPlaeeglgWlvpal 416 ii++svP+Lv++YP++i+livl+l+ k++k+ ++vyk ++l+t+i++l+++l++l+ik+ +++s+l++lP++++gl+Wl+p+l 23726_FusoPortal_Gene_1318 329 IIRISVPILVFIYPIIISLIVLNLFGKYIKN-DYVYKGVVLFTGIIGLIESLDSLGIKNYYTDSVLEILPFSDYGLTWLFPGL 410 *****************************87.99************************************************* PP Branch_AA_trans 417 vgliigliikk 427 vg+i++ ++ + 23726_FusoPortal_Gene_1318 411 VGYILFSFMFR 421 *****999866 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (426 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1024 (0.0612733); expected 334.2 (0.02) Passed bias filter: 369 (0.0220799); expected 334.2 (0.02) Passed Vit filter: 31 (0.00185495); expected 16.7 (0.001) Passed Fwd filter: 4 (0.000239349); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.33 # Mc/sec: 3752.71 // [ok]