# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1326.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1326 [L=156] Description: # 1437349 # 1437816 # -1 # ID=1_1326;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.226 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.8e-39 132.5 3.8 6.7e-39 131.7 3.8 1.4 1 DUF3601 Domain of unknown function (DUF3601) ------ inclusion threshold ------ 0.14 12.1 0.0 0.15 12.0 0.0 1.1 1 Neur_chan_memb Neurotransmitter-gated ion-channel transmembr Domain annotation for each model (and alignments): >> DUF3601 Domain of unknown function (DUF3601) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 131.7 3.8 8.1e-43 6.7e-39 1 77 [] 68 146 .. 68 146 .. 0.99 Alignments for each domain: == domain 1 score: 131.7 bits; conditional E-value: 8.1e-43 DUF3601 1 ekylysGdyvkViksFkDykGfehqaGEklyflgveslkyeaGfvLyis..klnekkIrLagaedeqekliahaeeyfe 77 ++ylysGdyvkVik+FkDy+Gf++qaGEk+yf++v++l+ye+G++Lyis kln+++I+L+++e++q+++++h+eeyfe 23726_FusoPortal_Gene_1326 68 KNYLYSGDYVKVIKDFKDYYGFTYQAGEKFYFACVYFLPYEDGYTLYISknKLNISPIYLQNREETQGEICSHPEEYFE 146 69***********************************************99***************************7 PP >> Neur_chan_memb Neurotransmitter-gated ion-channel transmembrane region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 1.8e-05 0.15 61 119 .. 6 64 .. 4 150 .. 0.69 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 1.8e-05 HHHHHHHHHHHHHHHHHHHHHHHH-S-----HHHHHHHTTHHHHHHH------------ CS Neur_chan_memb 61 LlftmvfvtlsivetvfVlnvhhrsprthtmpawvrkvfldklprllfmkrpsevkdne 119 L+ +vfv++ i +++ +++++ ++r+++ +++ k + ++l ++f ++++++ +++ 23726_FusoPortal_Gene_1326 6 LILPFVFVFIGIFTVIYIIYTTINEKRRKKLRDEEFKKIKETLFSYEFESTQKNAVNKN 64 66779******************999999999999888888888888877665544433 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (156 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1484 (0.0887985); expected 334.2 (0.02) Passed bias filter: 748 (0.0447583); expected 334.2 (0.02) Passed Vit filter: 91 (0.00544519); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179512); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.25u 0.23s 00:00:00.48 Elapsed: 00:00:00.32 # Mc/sec: 1417.18 // [ok]