# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1327.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1327 [L=240] Description: # 1437836 # 1438555 # -1 # ID=1_1327;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.217 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00039 19.8 6.9 0.00039 19.8 6.9 2.0 2 OST3_OST6 OST3 / OST6 family, transporter family 0.00046 19.5 1.3 0.00077 18.7 1.3 1.3 1 UbiA UbiA prenyltransferase family ------ inclusion threshold ------ 0.04 14.1 12.5 0.076 13.1 12.5 1.4 1 EI24 Etoposide-induced protein 2.4 (EI24) 0.064 13.1 8.5 0.4 10.5 0.8 2.2 2 RseC_MucC Positive regulator of sigma(E), RseC/MucC 0.17 11.9 2.9 5 7.1 0.5 2.2 2 Phage_holin_3_6 Putative Actinobacterial Holin-X, holin supe 0.9 9.6 19.8 1.1 9.3 6.5 2.4 2 DUF3792 Protein of unknown function (DUF3792) 2.6 6.1 14.8 3.7 5.6 14.8 1.2 1 DUF2070 Predicted membrane protein (DUF2070) 2.8 7.3 11.8 0.15 11.5 2.9 2.2 2 DUF3087 Protein of unknown function (DUF3087) 7.4 6.2 26.1 0.16 11.7 15.3 2.1 2 DUF443 Protein of unknown function (DUF443) 7.8 6.5 18.5 9.9 6.2 8.8 3.0 3 DHHC DHHC palmitoyltransferase 9.9 5.9 24.7 3 7.6 7.4 2.2 2 7TMR-DISM_7TM 7TM diverse intracellular signalling Domain annotation for each model (and alignments): >> OST3_OST6 OST3 / OST6 family, transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.7 5.3 0.43 6.5e+02 152 205 .. 24 78 .. 10 82 .. 0.54 2 ! 19.8 6.9 2.5e-07 0.00039 131 225 .. 74 169 .. 69 181 .. 0.92 Alignments for each domain: == domain 1 score: -0.7 bits; conditional E-value: 0.43 OST3_OST6 152 iiitallvlllvlllklrrklll.kilksktlwavlslliillftsGymfnqIrg 205 +++++ lv+l+v l+++ + ++ +l+ ++ ++ ll+ + + m+ I+ 23726_FusoPortal_Gene_1327 24 FLLVISLVILIVQLFFKDSLSFSeGNLTIINSFVAFILLFLYITLTADMYVTIKR 78 2333333333333333333333213366666666666667777777888888876 PP == domain 2 score: 19.8 bits; conditional E-value: 2.5e-07 OST3_OST6 131 kfisertg.vkirikrppnyskiiitallvlllvlllklrrklllkilksktlwavlslliillftsGymfnqIrgvpfvard 212 i++ + +ki++ ++ + + t +++l +++ll ++++i++ ++++++l+ ++i + +s y + I++ +f + 23726_FusoPortal_Gene_1327 74 VTIKRIKErEKIEVPNEFRVDGFKQTYFIILYIIVLLSALALVFASIITGQNIVMTLMGIVITIIVSTYIYSMIKNRKFSLEV 156 56777777899************************************************************************ PP OST3_OST6 213 ekggiqyfaggsq 225 ++++i+ f+++++ 23726_FusoPortal_Gene_1327 157 KNKNIKIFYKNQE 169 ********99875 PP >> UbiA UbiA prenyltransferase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 1.3 5.1e-07 0.00077 111 234 .. 13 147 .. 11 163 .. 0.66 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 5.1e-07 UbiA 111 lKrrtllgtvvggiafglppllgwaavtgsl...........sllalllalavfll.twaialandlrdregDrkagiktlpv 181 +Kr +l+ ++ ++ l++l+ ++ sl s +++++++fl+ t++ +++ ++++++ +k+ ++ 23726_FusoPortal_Gene_1327 13 TKRKKILKLILFLLVISLVILIVQLFFKDSLsfsegnltiinS---FVAFILLFLYiTLTADMYVTIKRIKEREKIEVPNEFR 92 6888888888888888888998888888888999998885432...33333333331444444448***************** PP UbiA 182 vlGrkaarillalllavllla....llllllalllllylllalllaalallraarlv 234 v G k +++ ++l++++ll+ +++ +++ + +++l+++++ ++ + + + 23726_FusoPortal_Gene_1327 93 VDGFKQTYF--IILYIIVLLSalalVFASIITGQNIVMTLMGIVITIIVSTYIYSMI 147 ********9..4444444444445344555555555555555555554444444443 PP >> EI24 Etoposide-induced protein 2.4 (EI24) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 12.5 5e-05 0.076 8 131 .. 11 144 .. 5 167 .. 0.60 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 5e-05 HHTS.TTTHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....HHHHHHHHHH.HH.T. CS EI24 8 lllssprllallllplllnlllfllllvlllwvllasllvllllllplwlfplvalllaapf.....ygllaekvekrhl.g. 83 ++ +++++l+l+l l+++l++++ + +++ sl + ++ l ++ f+++ ll+ + y ++ ++ e+ ++ + 23726_FusoPortal_Gene_1327 11 DFTKRKKILKLILFLLVISLVILI-VQLFF----KDSLSFSEGNLTIINSFVAFILLFLYITltadmYVTIKRIKER-EKiEv 87 677789****************99.33333....2344444444444333332222222222122313333333333.32212 PP ..CCTTSHHHHHHHHHHHHHHHHHHHHH....HH...TTHHH....HHHHHHHHHHH CS EI24 84 ..glvkslaeslkslllllllllvllpl....li...Pvvglilsplllswltayfy 131 ++ + + + ++++l++++ll +l+l +i +v +++ ++++ +++ y+y 23726_FusoPortal_Gene_1327 88 pnEFRVDGFKQTYFIILYIIVLLSALALvfasIItgqNIVMTLMGIVITIIVSTYIY 144 336777777999999999999998888876764445555666666666666666655 PP >> RseC_MucC Positive regulator of sigma(E), RseC/MucC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.8 0.00026 0.4 59 115 .. 14 70 .. 12 88 .. 0.82 2 ? 6.7 1.6 0.0041 6.2 68 117 .. 102 150 .. 94 161 .. 0.70 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.00026 RseC_MucC 59 eeksllkaallvYllPllllilgallgsallgssellaalgallglvlgflivrlls 115 ++k++lk +l++ ++ l++li+ +++ ++l++s+ l+++ ++++++l fl+++l + 23726_FusoPortal_Gene_1327 14 KRKKILKLILFLLVISLVILIVQLFFKDSLSFSEGNLTIINSFVAFILLFLYITLTA 70 578999************************977777888888888888888877654 PP == domain 2 score: 6.7 bits; conditional E-value: 0.0041 RseC_MucC 68 llvYllPllllilgallgsallgssellaalgallglvlgflivrllskr 117 +++Y++ ll ++ +++ + g++ +++++g ++ ++++ +i ++++r 23726_FusoPortal_Gene_1327 102 IILYIIVLLSALALVFASIIT-GQNIVMTLMGIVITIIVSTYIYSMIKNR 150 567777777776666666666.6777777777788888888888887777 PP >> Phage_holin_3_6 Putative Actinobacterial Holin-X, holin superfamily III # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 0.1 0.015 23 37 92 .. 22 80 .. 13 91 .. 0.37 2 ? 7.1 0.5 0.0033 5 46 95 .. 101 151 .. 96 161 .. 0.70 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.015 Phage_holin_3_6 37 agllgaalvlallalllllvala..............lalaalwlaalivaavllvlagvl.alvglkklk 92 +++ l +++l+++++ l +++ +++l +++ + ++v++k++k 23726_FusoPortal_Gene_1327 22 ILF---------LLVISLVILIVqlffkdslsfsegnLT---IINSFVAFILLFLYITLTAdMYVTIKRIK 80 222.........223333333322223333223332211...22222222223333332221333444444 PP == domain 2 score: 7.1 bits; conditional E-value: 0.0033 Phage_holin_3_6 46 lallalllllvalalala.alwlaalivaavllvlagvlalvglkklkkak 95 + +l +++ll alal++a + ++++++ +v+++++ ++ +k++k 23726_FusoPortal_Gene_1327 101 FIILYIIVLLSALALVFAsIITGQNIVMTLMGIVITIIVSTYIYSMIKNRK 151 666777777777777775446666666777777777777777777777655 PP >> DUF3792 Protein of unknown function (DUF3792) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.3 6.5 0.00075 1.1 3 51 .. 16 64 .. 14 73 .. 0.91 2 ? 6.1 5.3 0.0073 11 13 58 .. 101 146 .. 96 188 .. 0.59 Alignments for each domain: == domain 1 score: 9.3 bits; conditional E-value: 0.00075 DUF3792 3 kavlkgllialvitlilllilalllyftslsekvlsililiililsvfi 51 k++lk +l+ lvi+l++l++ ++ s+se +l+i+++++ ++ +f+ 23726_FusoPortal_Gene_1327 16 KKILKLILFLLVISLVILIVQLFFKDSLSFSEGNLTIINSFVAFILLFL 64 689*************99999999888999***************9986 PP == domain 2 score: 6.1 bits; conditional E-value: 0.0073 DUF3792 13 lvitlilllilalllyftslsekvlsililiililsvfigGflagk 58 ++i+ i++l+ al+l f s+ + +++l+ +++ +++ ++ + 23726_FusoPortal_Gene_1327 101 FIILYIIVLLSALALVFASIITGQNIVMTLMGIVITIIVSTYIYSM 146 3444444444444444443332222222222222222333333322 PP >> DUF2070 Predicted membrane protein (DUF2070) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.6 14.8 0.0025 3.7 16 124 .. 28 149 .. 8 165 .. 0.45 Alignments for each domain: == domain 1 score: 5.6 bits; conditional E-value: 0.0025 DUF2070 16 vsllliillalligllaflssk..........lfgillfglpalvaflltlpvlrilggr.....ltykrslflalltelivv 83 +sl+++i+ ++ ++ +++ ++ +++++ lt + +++++ +++ + + + +++++ 23726_FusoPortal_Gene_1327 28 ISLVILIVQLFFK--------DslsfsegnltIINSFVAFILLFLYITLTADMYVTIKRIkerekIEVPNEFRVDGFKQTYFI 102 2222222222222........23345555577445555555555555555555555555545566555555555555555555 PP DUF2070 84 iisllaillsall......qalvllalvlslalvfalrllvlvavsd 124 i++++ +l ++ l + + ++++++++++++++ ++ ++ + 23726_FusoPortal_Gene_1327 103 ILYIIVLLSALALvfasiiTGQNIVMTLMGIVITIIVSTYIYSMIKN 149 44444444332222232222222222333344444444444433333 PP >> DUF3087 Protein of unknown function (DUF3087) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.7 1.6 0.2 3.1e+02 16 47 .. 15 44 .. 4 76 .. 0.70 2 ? 11.5 2.9 9.6e-05 0.15 14 79 .. 98 156 .. 91 163 .. 0.85 Alignments for each domain: == domain 1 score: 0.7 bits; conditional E-value: 0.2 DUF3087 16 nrvivalvallavlsllfstllialfgeeevs 47 ++ i++l+++l+v+sl++ l+++lf +++ s 23726_FusoPortal_Gene_1327 15 RKKILKLILFLLVISLVI--LIVQLFFKDSLS 44 667889999999999987..788888877765 PP == domain 2 score: 11.5 bits; conditional E-value: 9.6e-05 DUF3087 14 klnrvivalvallavlsllfstllialfgeeevsnfhlnllGvvlalvltaailrklktkpfmaev 79 ++ +i+ +++ll +l+l+f++++ +++n+++ l+G+v+++++++ i + +k+++f ev 23726_FusoPortal_Gene_1327 98 QTYFIILYIIVLLSALALVFASII-------TGQNIVMTLMGIVITIIVSTYIYSMIKNRKFSLEV 156 566677788888888888888776.......4689*************************997776 PP >> DUF443 Protein of unknown function (DUF443) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 10.5 2.2 3.3e+03 142 190 .. 19 68 .. 5 78 .. 0.63 2 ? 11.7 15.3 0.0001 0.16 97 203 .] 52 157 .. 46 157 .. 0.74 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 2.2 DUF443 142 lknfllllfaylfflglvilalvali......etqniiilivlllllfllfllnv 190 lk +l l++++lvil +++++ + +n+ i+ +++ +++l++ +++ 23726_FusoPortal_Gene_1327 19 LKLIL-----FLLVISLVILIVQLFFkdslsfSEGNLTIINSFVAFILLFLYITL 68 33333.....445555555555555555554788998888777777777776654 PP == domain 2 score: 11.7 bits; conditional E-value: 0.0001 DUF443 97 iillivlllvlvlriyiskklkkklynevelekkskekiil....ipkslknfllllfaylfflglvilalvalietqniiil 175 ii v ++l+l+i + + + ++ k++eki + ++ +k+ +++ + +++l+ + l++ ++i+ qni++ 23726_FusoPortal_Gene_1327 52 IINSFVAFILLFLYITLTADMYVTIKRI-----KEREKIEVpnefRVDGFKQTYFIILYIIVLLSALALVFASIITGQNIVMT 129 3444444555556666555544444444.....45555543222266789********************************* PP DUF443 176 ivlllllfllfllnvltisdgkttvklk 203 ++ +++++++ + +++i+++k ++k 23726_FusoPortal_Gene_1327 130 LMGIVITIIVSTYIYSMIKNRKFSLEVK 157 *******************999887665 PP >> DHHC DHHC palmitoyltransferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.7 1.1 0.039 59 86 123 .. 10 47 .. 1 56 [. 0.68 2 ? 6.2 8.8 0.0065 9.9 50 124 .. 58 132 .. 46 149 .. 0.56 3 ? 3.6 1.3 0.041 62 57 93 .. 127 163 .. 124 188 .. 0.50 Alignments for each domain: == domain 1 score: 3.7 bits; conditional E-value: 0.039 DHHC 86 lavtllkkllsilllvlsllfllllgllllfhlylilr 123 l +t+ kk+l+++l++l + +++l+++l++ + ++ 23726_FusoPortal_Gene_1327 10 LDFTKRKKILKLILFLLVISLVILIVQLFFKDSLSFSE 47 34444555888999999999999999999987777663 PP == domain 2 score: 6.2 bits; conditional E-value: 0.0065 DHHC 50 yFllfllylllllilalvlllialvklveeekkseflavtllkk...llsilllvlsllfllllgllllfhlylilrn 124 +F+l+ ly++l + +++++ i ++ +e ++++ v+ +k+ ++ +++++ls+l+l++ ++++ +++++l + 23726_FusoPortal_Gene_1327 58 AFILLFLYITLTADMYVTIKRIKEREKIEVPNEFR---VDGFKQtyfIILYIIVLLSALALVFASIITGQNIVMTLMG 132 23333334444444444444444344443333333...3333335547777777777777777777777777766655 PP == domain 3 score: 3.6 bits; conditional E-value: 0.041 DHHC 57 ylllllilalvlllialvklveeekkseflavtllkk 93 +++l+ i+++++ +++++++++++k+s + +++k 23726_FusoPortal_Gene_1327 127 VMTLMGIVITIIVSTYIYSMIKNRKFSLEVKNKNIKI 163 4455555555555556666666665555554444443 PP >> 7TMR-DISM_7TM 7TM diverse intracellular signalling # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 7.6 7.4 0.002 3 86 140 .. 8 64 .. 5 86 .. 0.56 2 ? 4.1 9.3 0.022 34 98 151 .. 101 152 .. 88 154 .. 0.52 Alignments for each domain: == domain 1 score: 7.6 bits; conditional E-value: 0.002 7TMR-DISM_7TM 86 sflelkkkprllklllllavllsllllllpllpyteslslaq....llallvillllli 140 ++l+ k++++lkl+l+l+v+ +++l++ l+ ++ sls++ ++ +v+++ll++ 23726_FusoPortal_Gene_1327 8 NILDFTKRKKILKLILFLLVISLVILIV-QLF-FKDSLSFSEgnltIINSFVAFILLFL 64 667776644***********96555555.333.34444444432212222222222211 PP == domain 2 score: 4.1 bits; conditional E-value: 0.022 7TMR-DISM_7TM 98 klllllavllsllllllpllpyteslslaqllallvillllligikawrkgnkp 151 ++l + vlls+l+l+ + + ++++ l+ +vi +++ + i++++k++k 23726_FusoPortal_Gene_1327 101 FIILYIIVLLSALALV--FASIITGQNIVMTLMGIVITIIVSTYIYSMIKNRKF 152 2333333333344444..444444444555566666666666666666777665 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (240 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1670 (0.0999282); expected 334.2 (0.02) Passed bias filter: 522 (0.031235); expected 334.2 (0.02) Passed Vit filter: 81 (0.00484682); expected 16.7 (0.001) Passed Fwd filter: 31 (0.00185495); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 11 [number of targets reported over threshold] # CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.35 # Mc/sec: 1993.39 // [ok]