# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1339.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1339 [L=303] Description: # 1447341 # 1448249 # -1 # ID=1_1339;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.271 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.1e-42 142.9 36.5 3.3e-22 79.0 9.9 2.0 2 EamA EamA-like transporter family ------ inclusion threshold ------ 0.034 13.2 11.5 0.64 9.0 5.3 2.1 2 Nuc_sug_transp Nucleotide-sugar transporter 0.038 14.0 0.6 0.038 14.0 0.6 4.2 6 SPC12 Microsomal signal peptidase 12 kDa subunit (S 0.16 11.9 3.1 2.4 8.1 3.3 2.7 2 NdhL NADH dehydrogenase transmembrane subunit 0.46 9.6 19.5 0.044 12.9 4.5 2.3 2 PUNUT Purine nucleobase transmembrane transport Domain annotation for each model (and alignments): >> EamA EamA-like transporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 70.2 18.6 5.4e-23 1.8e-19 2 136 .. 7 140 .. 6 141 .. 0.94 2 ! 79.0 9.9 9.8e-26 3.3e-22 2 134 .. 151 285 .. 150 287 .. 0.94 Alignments for each domain: == domain 1 score: 70.2 bits; conditional E-value: 5.4e-23 EamA 2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwlll.lllgllgtvlafllff 83 +g+l+++laa++w+++fv++ ++ ++ p+t+++ r++ia i l +++ ++++kl ++ ++ll l++ + ++++ +l+ 23726_FusoPortal_Gene_1339 7 FGDLMLFLAAFIWGTAFVAQVTGMDRIGPFTFNMARSIIAIICLGAYLIITKSKL--PKDIGVLLQgGLVCGFFIFMGTSLQQ 87 699****************************************************..6666666666788889999999**** PP EamA 84 yalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136 ++l++t+a++ ++its+ +++ +l +++l+ k+ l+++++i+++++G++l+ 23726_FusoPortal_Gene_1339 88 IGLQYTTAGKTGFITSFYILIIPFLTMIFLKHKIDLLTWISIIIGFIGLYLLA 140 **************************************************985 PP == domain 2 score: 79.0 bits; conditional E-value: 9.8e-26 EamA 2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkd....wllllllgllgtvlafl 80 +g+++++l++++w+ ++++++ ++kvsp++l+f++f++ +il i all+e+ a ++ + w+++++ g+l++ +a+ 23726_FusoPortal_Gene_1339 151 RGDFIVFLGSFCWGGHILIIDYYSKKVSPVQLSFLQFVMLTILSGICALLFENETATMN--NiflsWKSIAYAGFLSSGIAYT 231 6999***************************************************3333..33366***************** PP EamA 81 lffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvll 134 l++ ++k+t++ +asli+sle vf+++ +++ l e +t++++lg+ +++l++++ 23726_FusoPortal_Gene_1339 232 LQMVGQKYTNPIIASLILSLEAVFAALAGYIMLDEVMTSREFLGCSIVFLAIIF 285 ***************************************************987 PP >> Nuc_sug_transp Nucleotide-sugar transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.0 0.4 0.00039 1.3 101 157 .. 87 143 .. 74 151 .. 0.80 2 ? 9.0 5.3 0.00019 0.64 211 312 .. 184 284 .. 172 287 .. 0.84 Alignments for each domain: == domain 1 score: 8.0 bits; conditional E-value: 0.00039 Nuc_sug_transp 101 yvalsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvqlkq 157 ++l+ +a+ + + il ++++++Lk+k+ W+s+++ ++G+ l+ + + 23726_FusoPortal_Gene_1339 87 QIGLQYTTAGKTGFITSFYILIIPFLTMIFLKHKIDLLTWISIIIGFIGLYLLAIPN 143 5556666666655666677899999************************98876655 PP == domain 2 score: 9.0 bits; conditional E-value: 0.00019 Nuc_sug_transp 211 niqlallsiilalltvllkdgskisekGffkGydlvvwvvvllqavGGlvvavvvkyaDnilkgfatslaiilstvasvllld 293 +q+ +l+i++++ +ll ++++ + + +f ++++ ++ l ++ + v ky++ i+ ++ sl + +++a +++ld 23726_FusoPortal_Gene_1339 184 FLQFVMLTILSGIC-ALLFENETATMNNIFLSWKSIAYAGFLSSGIAYTLQMVGQKYTNPIIASLILSLEAVFAALAGYIMLD 265 45555555555555.66677788888889999********99999999999999****************************9 PP Nuc_sug_transp 294 lkitllFllGallviaavf 312 +t +lG ++v +a++ 23726_FusoPortal_Gene_1339 266 EVMTSREFLGCSIVFLAII 284 99999999*******9997 PP >> SPC12 Microsomal signal peptidase 12 kDa subunit (SPC12) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.2 0.2 1.2 4.2e+03 22 47 .. 14 23 .. 7 29 .. 0.52 2 ? -3.9 0.2 4.4 1.5e+04 16 21 .. 44 49 .. 37 56 .. 0.42 3 ? -0.8 0.3 0.47 1.6e+03 27 54 .. 81 110 .. 67 123 .. 0.50 4 ? -0.4 1.9 0.34 1.1e+03 37 55 .. 125 143 .. 101 151 .. 0.68 5 ? -1.7 0.0 0.92 3.1e+03 17 29 .. 187 199 .. 170 214 .. 0.58 6 ? 14.0 0.6 1.1e-05 0.038 5 55 .. 236 287 .. 232 299 .. 0.84 Alignments for each domain: == domain 1 score: -2.2 bits; conditional E-value: 1.2 SPC12 22 viafivGyitqdlkltlyillagvvl 47 ++afi+G +++ 23726_FusoPortal_Gene_1339 14 LAAFIWG----------------TAF 23 3445544................433 PP == domain 2 score: -3.9 bits; conditional E-value: 4.4 SPC12 16 ilvlsa 21 i+ +++ 23726_FusoPortal_Gene_1339 44 IIAIIC 49 222222 PP == domain 3 score: -0.8 bits; conditional E-value: 0.47 SPC12 27 vGyitqdlkltlyillagvvlt.l.lvvvP 54 +G +q++ l + + + ++t + ++++P 23726_FusoPortal_Gene_1339 81 MGTSLQQIGLQYTTAGKTGFITsFyILIIP 110 455666655544444432222212133444 PP == domain 4 score: -0.4 bits; conditional E-value: 0.34 SPC12 37 tlyillagvvltllvvvPp 55 t + +++g++ l+ +P+ 23726_FusoPortal_Gene_1339 125 TWISIIIGFIGLYLLAIPN 143 3444556666666666665 PP == domain 5 score: -1.7 bits; conditional E-value: 0.92 SPC12 17 lvlsaviafivGy 29 +v+ ++++ i+ 23726_FusoPortal_Gene_1339 187 FVMLTILSGICAL 199 3344444444444 PP == domain 6 score: 14.0 bits; conditional E-value: 1.1e-05 SPC12 5 GQklaek.llqvilvlsaviafivGyitqdlkltlyillagvvltllvvvPp 55 GQk ++ ++++il+l av+a ++Gyi+ d +t +l++ ++ l+++ + 23726_FusoPortal_Gene_1339 236 GQKYTNPiIASLILSLEAVFAALAGYIMLDEVMTSREFLGCSIVFLAIIFSQ 287 899888615689999*************************999999998765 PP >> NdhL NADH dehydrogenase transmembrane subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.1 3.3 0.00071 2.4 12 41 .. 94 123 .. 85 144 .. 0.78 2 ? 1.5 0.2 0.083 2.8e+02 7 30 .. 121 144 .. 118 151 .. 0.74 Alignments for each domain: == domain 1 score: 8.1 bits; conditional E-value: 0.00071 NdhL 12 vllaylalsvlYllviPlilylwlrkRWyv 41 ++ + ++++ +Y+l+iP + +++l+++ 23726_FusoPortal_Gene_1339 94 TAGKTGFITSFYILIIPFLTMIFLKHKIDL 123 6678899*****************987555 PP == domain 2 score: 1.5 bits; conditional E-value: 0.083 NdhL 7 qdtllvllaylalsvlYllviPli 30 d+l+ + + +lYll iP + 23726_FusoPortal_Gene_1339 121 IDLLTWISIIIGFIGLYLLAIPNL 144 5666666666677789*****975 PP >> PUNUT Purine nucleobase transmembrane transport # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 4.5 1.3e-05 0.044 79 156 .. 73 150 .. 56 164 .. 0.90 2 ? 2.7 6.9 0.016 54 35 140 .. 182 283 .. 153 301 .. 0.66 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 1.3e-05 PUNUT 79 ivlGllvavdnllyslgllylpvstfslilatqLaFtaifsalinkqkftrfiinsvvlltisaallalssssdkpae 156 +v G+ +++ l +gl+y ++ +i++ ++ ++++++ k+k+ ++ +s+++ i+ +lla+ + sd + + 23726_FusoPortal_Gene_1339 73 LVCGFFIFMGTSLQQIGLQYTTAGKTGFITSFYILIIPFLTMIFLKHKIDLLTWISIIIGFIGLYLLAIPNLSDFTIN 150 678999***************************************************************998886655 PP == domain 2 score: 2.7 bits; conditional E-value: 0.016 PUNUT 35 qtlvqtagfPllllpllllllskkrkqkettssslslkklvllyivlGllv.avdnllyslgllylpvstfslilatqLaFta 116 +++q + +l ++ ll+ ++ + ++ +ls+k+++ + G+l+ ++ +l +g++y + ++slil+ +F a 23726_FusoPortal_Gene_1339 182 LSFLQFVMLTILSGICALLFENETATM---NNIFLSWKSIAYA----GFLSsGIAYTLQMVGQKYTNPIIASLILSLEAVFAA 257 467777766666655555555555444...5555566555443....55541456678899999999999************* PP PUNUT 117 ifsalinkqkftr..fiinsvvllti 140 + +++ + +t f s+v+l i 23726_FusoPortal_Gene_1339 258 LAGYIMLDEVMTSreFLGCSIVFLAI 283 **999999999962244457776655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (303 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 755 (0.0451771); expected 334.2 (0.02) Passed bias filter: 271 (0.0162159); expected 334.2 (0.02) Passed Vit filter: 26 (0.00155577); expected 16.7 (0.001) Passed Fwd filter: 5 (0.000299186); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.27u 0.23s 00:00:00.50 Elapsed: 00:00:00.31 # Mc/sec: 2841.39 // [ok]