# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1350.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1350 [L=367] Description: # 1456469 # 1457569 # 1 # ID=1_1350;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.257 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-95 319.9 29.9 2.1e-95 319.7 29.9 1.0 1 FTSW_RODA_SPOVE Cell cycle protein Domain annotation for each model (and alignments): >> FTSW_RODA_SPOVE Cell cycle protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 319.7 29.9 1.3e-99 2.1e-95 8 356 .. 16 362 .. 9 365 .. 0.97 Alignments for each domain: == domain 1 score: 319.7 bits; conditional E-value: 1.3e-99 FTSW_RODA_SPOVE 8 llllvilGlvmiysaslveslvlfgdsfvlfirqlvylllglivfvlllriplkfleklakllliislllLvlvkvplgssan 90 ++++ + l++i+s+s+++s++ ++ s +f++++v+ ++++ vf+ ++ ++++++ k+a +++i+ +l+L+ v v +g+s+ 23726_FusoPortal_Gene_1350 16 FFIVN-ILLLFIISLSTIYSATITK-SEPFFLKEIVWFIISIFVFIGVSLVDYRKYYKYATAIYIFNILMLLSVLV-IGTSRL 95 33444.7799***********9999.88999*********************************************.****** PP FTSW_RODA_SPOVE 91 GAkrWirlggisiqPsEfvkialilflAavlskkkkevksrlrellillvivllilvlillqpdlgtavllliillvvlflsg 173 GAkrWi+lg + +qPsEf+k++li+ ++a+l ++ + + r +++ ++ ++ ++ li+++pdlgt++++++i ++lfl 23726_FusoPortal_Gene_1350 96 GAKRWIDLGPLALQPSEFSKLFLIFTFSAYLINNYSDRYTGFRAMFMSFLHIFPVFFLIAIEPDLGTSLVIILIYGMLLFLNK 178 *********************************************************************************** PP FTSW_RODA_SPOVE 174 lslklilaivlalilviaivllilledyqvkrvtslldpfkdplgsgYqviqsliAigsGGllGkGlgnsqq.kleyLPeaht 255 l++k i+ ++ +++++i+i + +ll+ yq++r+ ++l+p+ d+lg+g+ ++qs+iAigsG ++GkG+ n +q kl+yLPe+ht 23726_FusoPortal_Gene_1350 179 LEWKCIATVFFTIAAFIPISYKFLLKGYQKDRIDTFLNPELDALGTGWNITQSKIAIGSGKIFGKGFLNNTQgKLKYLPESHT 261 ***********99*********************************************************999********** PP FTSW_RODA_SPOVE 256 DfIfavigEelGlvGvllllllffllivrglriarkakdrfgsllavgivllivvqsfinigmvlGllPvtGltlPflSyGGs 338 DfI +v+ Ee G++G +lll++++l+v++++ia+ ++d+fg+ ++ gi+++++++ f+n+gm++G++PvtGl+l ++SyGGs 23726_FusoPortal_Gene_1350 262 DFIGSVFLEERGFLGGSMLLLIYIVLLVQIIYIADTTEDKFGRYVCYGIATIFFFHIFVNMGMIMGIMPVTGLPLLLMSYGGS 344 *********************************************************************************** PP FTSW_RODA_SPOVE 339 Sllalliligillnisre 356 Sl+ +g++ ++ + 23726_FusoPortal_Gene_1350 345 SLVFSFLILGVVQSVRIH 362 ************998766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (367 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 930 (0.0556486); expected 334.2 (0.02) Passed bias filter: 261 (0.0156175); expected 334.2 (0.02) Passed Vit filter: 20 (0.00119674); expected 16.7 (0.001) Passed Fwd filter: 6 (0.000359023); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.32 # Mc/sec: 3334.00 // [ok]