# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1354.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1354 [L=155] Description: # 1460368 # 1460832 # 1 # ID=1_1354;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.241 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-21 76.3 0.0 2.5e-21 76.1 0.0 1.0 1 Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase 0.0014 18.2 0.0 0.0018 17.9 0.0 1.1 1 FMN_bind_2 Putative FMN-binding domain 0.005 17.7 0.1 0.0069 17.2 0.1 1.2 1 Prp31_C Prp31 C terminal domain ------ inclusion threshold ------ 0.023 14.9 1.7 0.04 14.2 1.7 1.4 1 UvsY Recombination, repair and ssDNA binding prote 0.17 12.0 0.0 0.23 11.6 0.0 1.3 1 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase Domain annotation for each model (and alignments): >> Pyridox_ox_2 Pyridoxamine 5'-phosphate oxidase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 76.1 0.0 7.4e-25 2.5e-21 2 141 .] 11 153 .. 10 153 .. 0.87 Alignments for each domain: == domain 1 score: 76.1 bits; conditional E-value: 7.4e-25 HHHHHHHHHC-SEEEEEEEETTEEEEEEEEEEEE..TTE...EEEEEETTSHCCHCCC.T--ECEEEEEEEEEEE-SE.GG.E CS Pyridox_ox_2 2 reeilalLdegevgrlafvddgepvilPvnyvvd..gds...lyfhgakgsrlaaalr.gapvcvvvtevdglvlars.fn.s 76 +eei ++++++ v rlaf+ +++p+ilP+n++++ + + +yfh+a ++ +++ + +++v+++ l ++ + 23726_FusoPortal_Gene_1354 11 KEEIIDIIKRCDVIRLAFNNGDYPYILPLNFGFEinE-NkiiFYFHSALEGTKVDIMKkDNRVSFEMDTKHKLQYYEEkGYcT 92 79********************************743.3688*******999998888566699999998888887777666* PP EEEEEEEEEEEEEEE--HHHHHHHCCCHHHHHSTTTGGCSB---CCCCCTEEEEEEEEEEEEEEE CS Pyridox_ox_2 77 lnyrSVvvrGraeevtdeeekaealellvekivpgrwenlrpptrkelkatsvlrlkieevsgrr 141 ++y SV+ rG+++ + +e+ek+ al++l++++ ++ ++ ++++++ t v++l++ee+++++ 23726_FusoPortal_Gene_1354 93 MSYESVIGRGKIKIL-SEDEKINALKKLMRHYHKNE--DT-YFNPAAISRTLVYSLEVEEMTAKK 153 ***************.****************6644..22.357999***************995 PP >> FMN_bind_2 Putative FMN-binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 0.0 5.3e-07 0.0018 9 140 .. 8 129 .. 2 153 .. 0.84 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 5.3e-07 X--HCHHHHHHHHS-EEEEEEEETTEEEEEEEE-EE...-TTSSEEEEEEETTSGGGGGT.TTS-EEEEEEEEEEEE-CCCSS CS FMN_bind_2 9 eedleelrqlirenplgtLvtaiesglqashiPflldeeekgkgkLrgHlaraNpqakaleeeeevlvvfqgpdaYvsPswYt 91 +++ee+ ++i++ + L ++ + + + + f + e +++k ++H a + ++ ++++++v + + +++ ++Y+ 23726_FusoPortal_Gene_1354 8 IKSKEEIIDIIKRCDVIRLAFNNGDYPYILPLNFGF-EINENKIIFYFHSALEGTKVDIMKKDNRVSFEMDTKHK---LQYYE 86 567889999999999999999999999999999999.777778899**************999988888888887...68899 PP TTS-....--EEEEEEEEEEEEEEE---HHHHHHHHHHHHHHHS---.. CS FMN_bind_2 92 ekkettkvvPTWnYaaVhvyGkakviedeeelrkqledltdqaEaerkk 140 ek T Y++V +Gk+k++ +e+e+ ++l++l++++ +++++ 23726_FusoPortal_Gene_1354 87 EK-----GYCTMSYESVIGRGKIKIL-SEDEKINALKKLMRHYHKNEDT 129 96.....68*****************.89999999*******9985544 PP >> Prp31_C Prp31 C terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.1 2.1e-06 0.0069 34 100 .. 64 130 .. 57 151 .. 0.65 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 2.1e-06 Prp31_C 34 elrkaqNRmaFG.keeeevgqgdetgvglGmlgkk...gsgriralqvdkktkaklskklkkrlqrssgvg 100 ++ k+ NR++F ++++++++ +e +g+ +++ + g+g+i++l+ d+k+ ++ kkl ++ +++++++ 23726_FusoPortal_Gene_1354 64 DIMKKDNRVSFEmDTKHKLQYYEE--KGYCTMSYEsviGRGKIKILSEDEKI--NALKKLMRHYHKNEDTY 130 899*********555555555444..45444444424669******999995..55566666666655444 PP >> UvsY Recombination, repair and ssDNA binding protein UvsY # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 1.7 1.2e-05 0.04 33 97 .. 62 125 .. 44 136 .. 0.86 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 1.2e-05 UvsY 33 dlkkekikleakkkkllkerleyYtgraddevykeeveksdelkvvlaaDeevikidakiqyidq 97 ++ +k+ ++ + k +l+yY+ ++ ++ e v ++++k+ l+ De++ +++ ++++++ 23726_FusoPortal_Gene_1354 62 KVDIMKKDNRVSFEMDTKHKLQYYEEKGYCTMSYESVIGRGKIKI-LSEDEKINALKKLMRHYHK 125 55567777788888999**************************96.899*********9999876 PP >> Putative_PNPOx Pyridoxamine 5'-phosphate oxidase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.0 6.9e-05 0.23 3 75 .. 12 85 .. 10 111 .. 0.82 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 6.9e-05 HHHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTT..TEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSEEE CS Putative_PNPOx 3 eelreflaeskavvlATvdedGrPnvspvllkagdgr..dgivfatnadsrklrnleenprvallflddelgrgv 75 ee+ ++++++++ +lA + d P++ p+++ + + +++f+++ + k+ +++++rv++ + + + +++ 23726_FusoPortal_Gene_1354 12 EEIIDIIKRCDVIRLAFNNGDY-PYILPLNFGFEINEnkIIFYFHSALEGTKVDIMKKDNRVSFEMDTKHKLQYY 85 6778899999999999998887.*******986666677899*********************999888855554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (155 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 794 (0.0475108); expected 334.2 (0.02) Passed bias filter: 399 (0.0238751); expected 334.2 (0.02) Passed Vit filter: 31 (0.00185495); expected 16.7 (0.001) Passed Fwd filter: 5 (0.000299186); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.24u 0.25s 00:00:00.49 Elapsed: 00:00:00.32 # Mc/sec: 1408.09 // [ok]