# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1363.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1363 [L=412] Description: # 1470508 # 1471743 # 1 # ID=1_1363;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.246 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-16 60.4 1.5 2.1e-16 60.4 1.5 1.6 2 Mur_ligase_M Mur ligase middle domain 1.3e-07 31.7 0.0 4e-07 30.1 0.0 1.9 1 Mur_ligase_C Mur ligase family, glutamate ligase domain 0.0029 16.8 0.4 0.015 14.5 0.0 2.2 3 DndB DNA-sulfur modification-associated ------ inclusion threshold ------ 0.029 14.0 0.0 0.065 12.9 0.0 1.6 1 PCMT Protein-L-isoaspartate(D-aspartate) O-methyl 0.038 14.0 0.3 0.19 11.8 0.3 2.2 1 DUF2990 Protein of unknown function (DUF2990) 0.084 12.7 0.2 0.34 10.7 0.0 2.0 2 Polysacc_deac_1 Polysaccharide deacetylase 0.098 12.4 0.5 0.29 10.9 0.2 1.9 2 CLTH CTLH/CRA C-terminal to LisH motif domain 0.12 12.5 1.2 7.8 6.7 0.2 3.0 2 Uteroglobin Uteroglobin family 0.13 11.6 0.0 0.17 11.2 0.0 1.2 1 Ins_P5_2-kin Inositol-pentakisphosphate 2-kinase 0.14 11.7 2.1 0.44 10.1 0.1 2.6 2 DEAD_2 DEAD_2 Domain annotation for each model (and alignments): >> Mur_ligase_M Mur ligase middle domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 60.4 1.5 1.2e-19 2.1e-16 1 190 [. 44 258 .. 44 260 .. 0.82 2 ? -2.5 0.1 2.5 4.1e+03 110 149 .. 321 360 .. 303 384 .. 0.55 Alignments for each domain: == domain 1 score: 60.4 bits; conditional E-value: 1.2e-19 EESSS-HHHHHHHHHHHHHCTEEEEETTC........................................SS-THHHHHHHHHH CS Mur_ligase_M 1 vTGtnGKTTtteliaailekagkvigtvg........................................ttnneiglpktlae 43 +TGtnGK ++++ +++il +ag +ig t e+++ ++ 23726_FusoPortal_Gene_1363 44 ITGTNGKGSVSTTVERILLDAGYKIGKYTsphilkfneriifndkyisdedvakyyervkkiidehniqATFFEVTTAMMFDY 126 8*****************999555555555779*********************************99988999999999999 PP HHHTT-SEEEEE--HCHHHCTTTCCHCBESEEEE---TSTTHHHH.SSHHHHHHHHHHHHHTSETTCEEEEETTSC...CHHH CS Mur_ligase_M 44 mekkeaeyavlEvsshglgekrlegllkpdvavitnispdHldfh.gtlenyaeaKaelferlkeegiavinaddpyakelik 125 +++ +a+y++lE+++ g ++++ v vitn+s +H +++ +t+ ++a++Ka ++++++ + + +p +++k 23726_FusoPortal_Gene_1363 127 FKDMKADYVILEAGMG--GRYDATNICDNIVSVITNVSLEHTEYLgDTIYKIAKEKAGIIKNCP---YTIFADNNP---DVKK 201 999*************..6666677799*****************889****************...666665566...6666 PP HHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHHH CS Mur_ligase_M 126 klkkakvkvvtfglekeaedlraknieeksegteiellevkggeleieipllGkhnvyNalaaia 190 ++++++ k v + ++ +++ + ++ +++ t+i + + + ++e +l+G+++ +N l+a 23726_FusoPortal_Gene_1363 202 AIEETTDKYVNVLEKYKDS---TYKLDFNTFLTNI--F-I--DGNKYEYSLFGDYQYKNFLCAYE 258 6666654444433333331...2256676677776..5.4..44579999************976 PP == domain 2 score: -2.5 bits; conditional E-value: 2.5 EEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEE CS Mur_ligase_M 110 iavinaddpyakelikklkkakvkvvtfglekeaedlrak 149 ++v + d+ +++kl++ ++++v ++ ++ + ak 23726_FusoPortal_Gene_1363 321 VLVSILKDKDRVSMFRKLNEISSNIVLTSIPDNPRASTAK 360 3444444444555666667777776666666655433444 PP >> Mur_ligase_C Mur ligase family, glutamate ligase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 30.1 0.0 2.4e-10 4e-07 3 85 .. 281 357 .. 279 362 .. 0.84 Alignments for each domain: == domain 1 score: 30.1 bits; conditional E-value: 2.4e-10 TSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSE.EEEEESS-TT CS Mur_ligase_C 3 gRlevvgeangvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrefhdefgrlasalads.lvvlgdypra 84 R+ev+++ +++vi D ahn +++++++k +++++++ ++ +++ +++ ++r +f +l + + l ++d+pra 23726_FusoPortal_Gene_1363 281 CRFEVYSK--NPLVIFDGAHNLAGVEELIKIVKQHFSKDEVTVLVSILKD---KDRV--SMFRKLNEISSNIvLTSIPDNPRA 356 5******9..99**********************************9888...6666..788888777555557777888877 PP S CS Mur_ligase_C 85 e 85 23726_FusoPortal_Gene_1363 357 S 357 5 PP >> DndB DNA-sulfur modification-associated # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.5 0.0 2.6 4.4e+03 50 65 .. 24 39 .. 22 47 .. 0.74 2 ? -0.9 0.0 0.41 6.9e+02 203 265 .. 71 135 .. 67 140 .. 0.62 3 ! 14.5 0.0 8.8e-06 0.015 92 152 .. 281 341 .. 259 393 .. 0.79 Alignments for each domain: == domain 1 score: -3.5 bits; conditional E-value: 2.6 DndB 50 rvkeIakYllensdey 65 ++keI kYl + +++y 23726_FusoPortal_Gene_1363 24 NIKEICKYLGNPEKSY 39 799******7766655 PP == domain 2 score: -0.9 bits; conditional E-value: 0.41 DndB 203 fTlstlveatkellknqsaskealdekielasefwnavaetipe..welveekkiss......kelRedsi 265 +T ++ ++++ +++n +++ ++ ++a+ +++ v ++i e +++ + +++ k+++ d++ 23726_FusoPortal_Gene_1363 71 YTSPHILKFNERIIFN-----DKYISDEDVAK-YYERVKKIIDEhnIQATFFEVTTAmmfdyfKDMKADYV 135 5667777888888877.....56666666777.88888888888544444333333355566666666665 PP == domain 3 score: 14.5 bits; conditional E-value: 8.8e-06 DndB 92 GvlkipmdaeilivDGQHRraAieealk..eepelgeeeipvvlfvelgleksqqlFadlNky 152 + + ++ + + i+DG H +a++ee++k ++ ++++e++v++ + ++ ++ ++F+ lN+ 23726_FusoPortal_Gene_1363 281 CRFEVYSKNPLVIFDGAHNLAGVEELIKivKQ-HFSKDEVTVLVSILKDKDR-VSMFRKLNEI 341 788999999999****************9555.5***********9777655.5899999943 PP >> PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.9 0.0 3.9e-05 0.065 41 111 .. 96 170 .. 61 184 .. 0.77 Alignments for each domain: == domain 1 score: 12.9 bits; conditional E-value: 3.9e-05 GTTSSS-EEEETTEEE--H...HHHHHHHHHTT.--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHH CS PCMT 41 kaYedaplsigynatiSap...hmvalalelle.lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelv 111 + Y + + +i + i a + a++ ++ + +k+ +Le G G y + + + ++ + vs+e+++ l 23726_FusoPortal_Gene_1363 96 AKYYERVKKIIDEHNIQATffeVTTAMMFDYFKdMKADYVILEAGMGGRYDATNICDNIVSVITNVSLEHTEYLG 170 5566666666666666665111478********9*****************9999999999999******98775 PP >> DUF2990 Protein of unknown function (DUF2990) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.8 0.3 0.00011 0.19 14 39 .. 84 109 .. 82 121 .. 0.87 Alignments for each domain: == domain 1 score: 11.8 bits; conditional E-value: 0.00011 DUF2990 14 lfddvYdfsdeLaefygkVskyIeea 39 +f+d Y ++++a++y +V+k I+e 23726_FusoPortal_Gene_1363 84 IFNDKYISDEDVAKYYERVKKIIDEH 109 799********************987 PP >> Polysacc_deac_1 Polysaccharide deacetylase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.0 0.00021 0.34 13 53 .. 85 129 .. 42 162 .. 0.84 2 ? -1.1 0.0 0.92 1.5e+03 13 32 .. 193 218 .. 185 220 .. 0.75 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 0.00021 EEESS......CSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHH CS Polysacc_deac_1 13 fDdgp......rdntteilpvLkkykvkatffvigglvedypdevre 53 f d + ++++++ ++ ++++++atff +++ ++ d + 23726_FusoPortal_Gene_1363 85 FNDKYisdedvAKYYERVKKIIDEHNIQATFFEVTT--AMMFDYFKD 129 55555777777899******************9995..333344444 PP == domain 2 score: -1.1 bits; conditional E-value: 0.92 EEESS......CSCHHHHHHHHHHCT CS Polysacc_deac_1 13 fDdgp......rdntteilpvLkkyk 32 +D p +++t++ ++vL+kyk 23726_FusoPortal_Gene_1363 193 ADNNPdvkkaiEETTDKYVNVLEKYK 218 55555666666888999999999997 PP >> CLTH CTLH/CRA C-terminal to LisH motif domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 1.5 2.5e+03 119 131 .. 26 38 .. 25 45 .. 0.84 2 ? 10.9 0.2 0.00017 0.29 14 105 .. 196 363 .. 195 388 .. 0.76 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 1.5 CLTH 119 sailkllglskes 131 ++i+k+lg++++s 23726_FusoPortal_Gene_1363 26 KEICKYLGNPEKS 38 79*******9876 PP == domain 2 score: 10.9 bits; conditional E-value: 0.00017 CLTH 14 egdlseaiewinenypellesnsnLeFkLkllqfielirgkt......................................... 55 + d+++aie++ ++y ++le+ ++ +kL f+ i + 23726_FusoPortal_Gene_1363 196 NPDVKKAIEETTDKYVNVLEKYKDSTYKLDFNTFLTNIFI-Dgnkyeyslfgdyqyknflcayevvkylgvdeniikeaakkv 277 5699*******************************99996.333455555566666667777777777777788888888888 PP CLTH 56 .......................kdieealeyarenl.efend............ehlkelekamsLLafsdpesselssplk 102 +ee+++ +++++ + e + +++l+++ s ++ + +++ + s k 23726_FusoPortal_Gene_1363 278 iwqcrfevysknplvifdgahnlAGVEELIKIVKQHFsKDEVTvlvsilkdkdrvSMFRKLNEISSNIVLTSIPDNPRASTAK 360 88888888888888887777666669999999999994444447777777777777777777777777766666655555555 PP CLTH 103 nll 105 +l+ 23726_FusoPortal_Gene_1363 361 ELY 363 555 PP >> Uteroglobin Uteroglobin family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.1 0.0 0.062 1e+02 25 45 .. 88 108 .. 87 115 .. 0.91 2 ? 6.7 0.2 0.0046 7.8 7 29 .. 198 220 .. 196 224 .. 0.91 Alignments for each domain: == domain 1 score: 3.1 bits; conditional E-value: 0.062 TT---HHHHHHHHHHHHHHTT CS Uteroglobin 25 kynpppeaeeavlelKqCvDk 45 ky++++++ + + +K+ +D+ 23726_FusoPortal_Gene_1363 88 KYISDEDVAKYYERVKKIIDE 108 8******************97 PP == domain 2 score: 6.7 bits; conditional E-value: 0.0046 HHHHHHHS-HHHHHHHHHTT--- CS Uteroglobin 7 vvdkfldgseeeYkesLqkynpp 29 +v+k + ++++Y++ L+ky+++ 23726_FusoPortal_Gene_1363 198 DVKKAIEETTDKYVNVLEKYKDS 220 68999***************987 PP >> Ins_P5_2-kin Inositol-pentakisphosphate 2-kinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 0.0001 0.17 161 224 .. 174 333 .. 155 389 .. 0.72 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.0001 HHHHTTSSSS--S--HHHHTSS-HHHHHHHHHHHHHS-TTTEEEEETTEE................................. CS Ins_P5_2-kin 161 lklkegkieeiskycPldLfsgdearvrraleallktpqnnlkvflngkl................................. 210 +k++++k+ i k cP +f+++ +v++a+e+ ++ n l+ +++++ 23726_FusoPortal_Gene_1363 174 YKIAKEKAGII-KNCPYTIFADNNPDVKKAIEETTDKYVNVLEKYKDSTYkldfntfltnifidgnkyeyslfgdyqyknflc 255 56544444444.99**********************99*****9999999998888888888888888888888888888888 PP ..............................................................HHHHHHHHHHHHH...T CS Ins_P5_2-kin 211 ..............................................................kfvellleaLlks...s 224 + v +l+++L+++ s 23726_FusoPortal_Gene_1363 256 ayevvkylgvdeniikeaakkviwqcrfevysknplvifdgahnlagveelikivkqhfskdE-VTVLVSILKDKdrvS 333 888888888888888888888888888888888888888888888554444444443333322.333333333333333 PP >> DEAD_2 DEAD_2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 0.1 0.34 5.7e+02 113 166 .. 71 118 .. 24 123 .. 0.78 2 ? 10.1 0.1 0.00026 0.44 109 162 .. 254 303 .. 234 319 .. 0.69 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 0.34 HHHHHHHCC-SEEEEEHHHHTSHHHHHHHHT..GGGCEEEETTGGGHHHHHHHH CS DEAD_2 113 ylsrelledadiiilpYqyLldekireslkgislknsivilDEAhNiedvceea 166 y+s ++l++ + ii+ +y+ de +++ ++ +k+ i+DE hNi+ + e+ 23726_FusoPortal_Gene_1363 71 YTSPHILKFNERIIFNDKYISDEDVAKYYER--VKK---IIDE-HNIQATFFEV 118 6666777777778888888888888888873..333...7788.9998887665 PP == domain 2 score: 10.1 bits; conditional E-value: 0.00026 --HHHHHHHHHCC-SEEEEEHHHHTSHHHHHHHHT..GGGCEEEETTGGGHHHH CS DEAD_2 109 lCPYylsrelledadiiilpYqyLldekireslkgislknsivilDEAhNiedv 162 lC Y +++ l d +ii + ++ + + ++ +kn vi+D AhN+ v 23726_FusoPortal_Gene_1363 254 LCAYEVVKYLGVDENIIKEAAKKVIWQCR---F-EVYSKNPLVIFDGAHNLAGV 303 55555555555555555555554443332...2.35679***********9865 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (412 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1180 (0.0706079); expected 334.2 (0.02) Passed bias filter: 622 (0.0372188); expected 334.2 (0.02) Passed Vit filter: 55 (0.00329105); expected 16.7 (0.001) Passed Fwd filter: 10 (0.000598372); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 10 [number of targets reported over threshold] # CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.40 # Mc/sec: 2994.24 // [ok]