# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1371.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1371 [L=173] Description: # 1477012 # 1477530 # 1 # ID=1_1371;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.266 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-06 28.4 0.0 2.1e-06 27.8 0.0 1.3 1 DUF3592 Protein of unknown function (DUF3592) ------ inclusion threshold ------ 0.025 13.9 0.0 0.027 13.8 0.0 1.2 1 DUF4838 Domain of unknown function (DUF4838) Domain annotation for each model (and alignments): >> DUF3592 Protein of unknown function (DUF3592) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.8 0.0 2.5e-10 2.1e-06 3 147 .. 7 166 .. 5 171 .. 0.78 Alignments for each domain: == domain 1 score: 27.8 bits; conditional E-value: 2.5e-10 DUF3592 3 glllfglifllaglallvlgglllvgkyllsgqwervpgtvlssehrhrsdgsrsstysvtvrYrysfqg.ervsglysgsdn 84 +ll +g++f++a ++l++ + + + +++g+vl++ + +dg +++ ++ v+Y+y+++ +++ + y s n 23726_FusoPortal_Gene_1371 7 ILLSAGIVFIFASVFLIIAEISKRISENKIENFQGEAEGEVLEVI-KSGRDGVGGKLLDTFVVYQYEVNKhKYIVKPYVLSKN 88 5678899******************9877777778**********.999******************9995444466777777 PP DUF3592 85 ...vgdyaaql..................yraGnavqvyynPsnPtqavldqtvsgtkagglwlmvglgavlGliflliglll 146 ++y ++ yraG+++++ yn +nP++ + ++ ++ g+ + G+i+++i ++l 23726_FusoPortal_Gene_1371 89 aaiNQKYFDSEivtcitymgthgmsrqtkYRAGESITIKYNLENPKKHEIL--NDKD---KMFAYKGFKIA-GSIIMIIPIIL 165 66555555555888899999999999999*****************96665..2333...33444444444.66666665555 PP DUF3592 147 v 147 v 23726_FusoPortal_Gene_1371 166 V 166 4 PP >> DUF4838 Domain of unknown function (DUF4838) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.8 0.0 3.2e-06 0.027 167 225 .. 60 118 .. 23 142 .. 0.89 Alignments for each domain: == domain 1 score: 13.8 bits; conditional E-value: 3.2e-06 DUF4838 167 skiaknilvwdYeinFan.ylapfpnlrviaenikfykengvrgvfaqgssekgsdfael 225 +k+ + ++v++Ye+n ++ ++ p+ + +++a n k++ v+ ++ +g++ +s ++++ 23726_FusoPortal_Gene_1371 60 GKLLDTFVVYQYEVNKHKyIVKPYVLSKNAAINQKYFDSEIVTCITYMGTH-GMSRQTKY 118 578899********99996778***************************99.44444444 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (173 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 729 (0.0436213); expected 334.2 (0.02) Passed bias filter: 344 (0.020584); expected 334.2 (0.02) Passed Vit filter: 30 (0.00179512); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.26u 0.25s 00:00:00.51 Elapsed: 00:00:00.35 # Mc/sec: 1436.90 // [ok]