# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1373.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1373 [L=133] Description: # 1478641 # 1479039 # 1 # ID=1_1373;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.223 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.4e-15 55.1 0.2 1.1e-14 54.5 0.2 1.2 1 Acetyltransf_7 Acetyltransferase (GNAT) domain 1.4e-14 54.2 0.0 2.1e-14 53.7 0.0 1.2 1 Acetyltransf_1 Acetyltransferase (GNAT) family 9.6e-14 51.3 0.1 1.1e-13 51.1 0.1 1.1 1 Acetyltransf_10 Acetyltransferase (GNAT) domain 2.6e-05 24.2 0.0 4.3e-05 23.5 0.0 1.3 1 Acetyltransf_CG GCN5-related N-acetyl-transferase 9.2e-05 22.4 0.0 0.00077 19.4 0.0 2.0 1 Acetyltransf_9 Acetyltransferase (GNAT) domain 0.0033 17.3 0.1 0.011 15.6 0.1 1.8 1 FR47 FR47-like protein ------ inclusion threshold ------ 0.029 14.0 0.0 0.032 13.9 0.0 1.2 1 DUF3749 Acetyltransferase (GNAT) domain 0.063 12.8 0.0 0.092 12.3 0.0 1.3 1 Ribosomal_S7 Ribosomal protein S7p/S5e Domain annotation for each model (and alignments): >> Acetyltransf_7 Acetyltransferase (GNAT) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.5 0.2 5.2e-18 1.1e-14 4 74 .. 43 120 .. 40 122 .. 0.72 Alignments for each domain: == domain 1 score: 54.5 bits; conditional E-value: 5.2e-18 EEEEEEET..TEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH....TT....SEEEEEEEEE.THHHHHHHHHHT CS Acetyltransf_7 4 evfVaedd..gkivGfialsled...aeitrlaVdpeyrgkGiGraLlea....ae....kgiileqlel.naekaikfYekl 72 ++ a+d +k +Gf+++ + ++++ + Vd+eyrgkGiG++L+e + +g+ l + + a kfYek+ 23726_FusoPortal_Gene_1373 43 LCYFAYDTdkNKLIGFARAITDYttnYYLCDIIVDEEYRGKGIGKKLVETlindEDlvhvRGL------LiT-KDAKKFYEKF 118 566687778899******8888787666666******************63332102223332......222.26999***** PP TE CS Acetyltransf_7 73 GF 74 GF 23726_FusoPortal_Gene_1373 119 GF 120 ** PP >> Acetyltransf_1 Acetyltransferase (GNAT) family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 53.7 0.0 9.9e-18 2.1e-14 7 117 .] 20 120 .. 14 120 .. 0.68 Alignments for each domain: == domain 1 score: 53.7 bits; conditional E-value: 9.9e-18 HHHHHTHHHHHHHHHHHHHHHHHSTTS.EEEEEEET.TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHH. CS Acetyltransf_1 7 llvesffppnedaseeefeesfsleae.gllvaeed.geliGfisllkipdekggvayieslaVspeyrgkGlGsaLleale. 86 ll+ s ++ + ++ e + ++ e + +++++ d ++liGf+++ ++ ++y++++ V++eyrgkG+G++L+e+l+ 23726_FusoPortal_Gene_1373 20 LLNTS-YWAKDRKKETV-KKT-V-EKSlCYFAYDTDkNKLIGFARAITDYT---TNYYLCDIIVDEEYRGKGIGKKLVETLIn 95 55544.24334444444.222.1.333245553333688***********9...9***************************6 PP .HHHHHTTESEEEEEEETTCHHHHHHHHHTTE CS Acetyltransf_1 87 .erareegikkivlaveedndaairlYeklGF 117 e + + + + + + a ++Yek+GF 23726_FusoPortal_Gene_1373 96 dEDLVHV--RGLLI-----TKDAKKFYEKFGF 120 5445555..33445.....56689*******9 PP >> Acetyltransf_10 Acetyltransferase (GNAT) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 51.1 0.1 5.5e-17 1.1e-13 17 114 .. 30 128 .. 12 132 .. 0.78 Alignments for each domain: == domain 1 score: 51.1 bits; conditional E-value: 5.5e-17 Acetyltransf_10 17 isaealrerieegealllvaeeggkivGviel.rdgs...hisllfVdpeyqgqGigkaLleaveeeaekdglkleltvnasp 95 ++e++++ +e++ +++ ++++k++G+++ +d +++ ++Vd+ey+g+Gigk+L+e+++++ + + + ++ 23726_FusoPortal_Gene_1373 30 RKKETVKKTVEKSLCYFAYDTDKNKLIGFARAiTDYTtnyYLCDIIVDEEYRGKGIGKKLVETLINDEDL--VH-VRGLLITK 109 466888888855555455555669******8768887899***************************544..44.44666688 PP Acetyltransf_10 96 yavpfYeklGFkavgeeqe 114 a++fYek+GF + +++ + 23726_FusoPortal_Gene_1373 110 DAKKFYEKFGFYNKEDVMQ 128 9**********99855444 PP >> Acetyltransf_CG GCN5-related N-acetyl-transferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.5 0.0 2.1e-08 4.3e-05 6 52 .. 50 96 .. 45 99 .. 0.76 Alignments for each domain: == domain 1 score: 23.5 bits; conditional E-value: 2.1e-08 Acetyltransf_CG 6 lddgeevafleYekrkegvldlthTeVpealrGkGiAkkLvkaaldd 52 +d+++ ++f++ ++ + + l ++V+e++rGkGi+kkLv++ ++d 23726_FusoPortal_Gene_1373 50 TDKNKLIGFARAITDYTTNYYLCDIIVDEEYRGKGIGKKLVETLIND 96 45566666664443445689999*******************98875 PP >> Acetyltransf_9 Acetyltransferase (GNAT) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.4 0.0 3.7e-07 0.00077 9 125 .. 13 120 .. 6 123 .. 0.76 Alignments for each domain: == domain 1 score: 19.4 bits; conditional E-value: 3.7e-07 GHHHHHHHHHHHTT----H..HHHHHHHHHHTTSEEEEEEETTE..EEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS- CS Acetyltransf_9 9 dldevlellkyaFqdeespleeireyfrklleesrvlgaednge..lvgqlallplelnvpGktlkaagvtgVavapehrgrg 89 +d+ +ll++++ ++++ e ++k++e+s ++ a+d ++ l+g +++ ++ + + ++++++ v+ e+rg+g 23726_FusoPortal_Gene_1373 13 NIDDLTKLLNTSYWAKDRKK----ETVKKTVEKSLCYFAYDTDKnkLIGFARA----ITDYT---TNYYLCDIIVDEEYRGKG 84 67888888888888888883....77899999999999999555115554443....33333...3369************** PP HHHHHHHHHHHHHHHTT--EEEE--SSHHHHHTTT- CS Acetyltransf_9 90 vlskLlaraleemreegqplsllfPssipiYrrfGy 125 + +kL+++++++ + ++ l++ + ++Y++fG+ 23726_FusoPortal_Gene_1373 85 IGKKLVETLINDEDLVHVRGLLITKDAKKFYEKFGF 120 **********99888777777777788899999996 PP >> FR47 FR47-like protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.1 5.4e-06 0.011 23 79 .. 70 122 .. 47 128 .. 0.75 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 5.4e-06 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EE CS FR47 23 elgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfek 79 +l + v++e r++G g++lv+ l++ ++ v + + + ++yek Gf 23726_FusoPortal_Gene_1373 70 YLCDIIVDEEYRGKGIGKKLVETLIN----DEDLVHVRGLLITKDAKKFYEKFGFYN 122 577899***************98875....456666666667788999999999976 PP >> DUF3749 Acetyltransferase (GNAT) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.9 0.0 1.5e-05 0.032 47 96 .. 53 103 .. 4 128 .. 0.63 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 1.5e-05 DUF3749 47 dRlLg.AvkveledkeaelsdlcVRevTRrRGVglyLleearrqaPevksw 96 ++l+g A +++ + l d++V e+ R +G+g++L+e ++ v+ 23726_FusoPortal_Gene_1373 53 NKLIGfARAITDYTTNYYLCDIIVDEEYRGKGIGKKLVETLINDEDLVHVR 103 355553556888889999*********************998887444443 PP >> Ribosomal_S7 Ribosomal protein S7p/S5e # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 4.4e-05 0.092 11 71 .. 5 67 .. 1 76 [. 0.88 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 4.4e-05 -----SSS--HHHHHHHHHH-B..TTBTTTHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHH-- CS Ribosomal_S7 11 evlpdpkynselveklinklmk..dGkkslAekivygaldiieektkkdplevleeAlenvkP 71 +++d+ yn + ++kl n+ d kk++ +k+v+++l + + t+k+ l + +A+ + 23726_FusoPortal_Gene_1373 5 IIKNDTNYNIDDLTKLLNTSYWakDRKKETVKKTVEKSLCYFAYDTDKNKLIGFARAITDYTT 67 57899***********99876555*********************************988765 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (133 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 657 (0.0393131); expected 334.2 (0.02) Passed bias filter: 305 (0.0182504); expected 334.2 (0.02) Passed Vit filter: 34 (0.00203447); expected 16.7 (0.001) Passed Fwd filter: 8 (0.000478698); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.23u 0.23s 00:00:00.46 Elapsed: 00:00:00.31 # Mc/sec: 1247.21 // [ok]