# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1381.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1381 [L=501] Description: # 1486248 # 1487750 # -1 # ID=1_1381;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-92 309.8 0.5 2.8e-92 309.5 0.5 1.1 1 SBP_bac_5 Bacterial extracellular solute-binding proteins, f 0.0016 17.8 0.0 0.0036 16.7 0.0 1.5 1 SBP_bac_3 Bacterial extracellular solute-binding proteins, f Domain annotation for each model (and alignments): >> SBP_bac_5 Bacterial extracellular solute-binding proteins, family 5 Middle # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 309.5 0.5 3.3e-96 2.8e-92 2 375 .. 72 418 .. 71 420 .. 0.95 Alignments for each domain: == domain 1 score: 309.5 bits; conditional E-value: 3.3e-96 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHCGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESS CS SBP_bac_5 2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkk 84 ++p LAes +e ++ k++ + L+kgvkF+DG++ltA+Dvvfsfer++d++++s +i+kve+v+dy++++ lk 23726_FusoPortal_Gene_1381 72 IKPELAES-YE-YKNDKELDIILKKGVKFHDGSELTADDVVFSFERMKDKPGSSIMVE------EIDKVEKVNDYEIKLFLKN 146 79******.56.677788*********************************9998744......579**************** PP ETTTTTTHHHHHHHHHGSHHSHCCCTTTTGTTTS--BSSSEEEEEEETTTEEEEEE-TTSTTTSGSSSSEEEEEE-.SHHHHH CS SBP_bac_5 85 pnalfltllaavpasiakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdara 167 + +l+ la+++ si+ +k+ ++++d +p+gtG++kl +++ g+ki+le+++dY+ g+pk+++i+f+ ip++++ + 23726_FusoPortal_Gene_1381 147 SSSALLYNLAHPITSIV---NKKYVEAGNDLSVAPMGTGAFKLIAYNDGEKIELEAFKDYF-EGAPKVEKITFRAIPEDTSML 225 *****************...467777799*******************************9.********************* PP HHHHTTSSSEEESTTCCTHHHHHHHTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHTSTTSCEEESS CS SBP_bac_5 168 aalqsGeiddvaepppsdieqlkeakglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpans 250 aal++Ge+d+++++pp + ++++++++l++ +++p++ ++y+ +N +k pfd+k++R+Al+yAiD+++i++ ++ g +++a+s 23726_FusoPortal_Gene_1381 226 AALETGEVDIATGMPPVSTQTIEANDKLDL-ISEPTTATEYICLNVEKVPFDNKDFRKALNYAIDKQSIIDSIFSGRGKVAKS 307 ******************************.**************************************************** PP SSTTTSTTCCCCGSSHSHHSHHHHHHHHHHHTT-BCSSTSEEETCEEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEE CS SBP_bac_5 251 llppsspgadeeykpaykaydpekAkklLkeaGykdgdggglrekklkltlllasgspaekaiaeliqqqlkkiGikvevktv 333 ++ p++ g+++ +++ +++pekAk+l+++ kd + l++++sp++ ++a++iq++lk++Gi+++++t+ 23726_FusoPortal_Gene_1381 308 IVNPNVFGYYDGLEEY--PFNPEKAKELIEKSDVKDM-----------SFSLYVNDSPVRLQVAQIIQANLKDVGIDMNIETL 377 *888888888888886..89****************9...........789999999************************** PP CHHHHHHHHHHTTTESEEEEEEECTTSTTHHHHHHHHSTTGT CS SBP_bac_5 334 dwaatylervkdgdfdmillgwgadypdpdnflnpflsssga 375 +w tyl+++ +gdf ++l+gw ++++d+d l+p+l s+++ 23726_FusoPortal_Gene_1381 378 EW-GTYLQKTGEGDFTAYLGGWISGTSDADIVLYPLLDSKSI 418 **.*********************************998876 PP >> SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.7 0.0 4.3e-07 0.0036 131 208 .. 209 290 .. 183 292 .. 0.84 Alignments for each domain: == domain 1 score: 16.7 bits; conditional E-value: 4.3e-07 C..TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEET...TTHHHHHHHHHHHHH CS x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx RF SBP_bac_3 131 k..gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrk...gdseLrkainkalae 208 k +++ + + ++++l+aL++g+vd + + pv + ++ n++++++ e++ ++e++ v k +++++rka+n a+++ 23726_FusoPortal_Gene_1381 209 KveKITFRAIPEDTSMLAALETGEVDIATGMPPVSTQTIEANDKLDLIS-EPTTATEYICLNVEKvpfDNKDFRKALNYAIDK 290 24578889999**************************************.7777777777776666669***********986 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (501 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 523 (0.0312949); expected 334.2 (0.02) Passed bias filter: 422 (0.0252513); expected 334.2 (0.02) Passed Vit filter: 24 (0.00143609); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.36 # Mc/sec: 4045.62 // [ok]