# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1398.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1398 [L=427] Description: # 1505835 # 1507115 # 1 # ID=1_1398;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.269 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.9e-67 226.8 3.4 3.1e-67 226.0 3.4 1.4 1 GARS_A Phosphoribosylglycinamide synthetase, ATP-gr 1.4e-31 109.0 0.1 4.7e-31 107.3 0.1 2.0 1 GARS_N Phosphoribosylglycinamide synthetase, N doma 6.3e-28 96.8 0.0 1.9e-27 95.2 0.0 1.9 1 GARS_C Phosphoribosylglycinamide synthetase, C doma 4.2e-14 52.4 0.2 2.6e-13 49.9 0.3 2.1 2 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP bi 4.5e-08 32.8 1.1 1.2e-07 31.4 1.1 1.8 1 ATP-grasp ATP-grasp domain 1.1e-06 28.7 0.2 2.1e-06 27.7 0.2 1.5 1 ATP-grasp_3 ATP-grasp domain 4.3e-06 26.4 0.1 9.4e-06 25.2 0.1 1.6 1 RimK RimK-like ATP-grasp domain 9.8e-06 25.2 0.2 2.5e-05 23.9 0.2 1.7 1 ATP-grasp_4 ATP-grasp domain 7.2e-05 22.3 0.4 0.00016 21.2 0.4 1.5 1 ATP-grasp_2 ATP-grasp domain 9.5e-05 21.9 1.2 9.5e-05 21.9 1.2 2.0 2 Dala_Dala_lig_C D-ala D-ala ligase C-terminus 0.0001 21.8 0.2 0.00022 20.7 0.2 1.5 1 ATP-grasp_5 ATP-grasp domain 0.0012 17.5 2.0 0.0029 16.3 0.3 2.3 3 ATPgrasp_Ter ATP-grasp in the biosynthetic pathway with T 0.0039 17.9 0.2 0.015 16.0 0.0 2.1 2 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann ------ inclusion threshold ------ 0.18 12.4 1.5 0.43 11.2 0.0 2.4 3 CoA_binding CoA binding domain Domain annotation for each model (and alignments): >> GARS_A Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 226.0 3.4 2.6e-70 3.1e-67 1 194 [] 101 293 .. 101 293 .. 0.99 Alignments for each domain: == domain 1 score: 226.0 bits; conditional E-value: 2.6e-70 HBHHHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSE CS GARS_A 1 asKsfakdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekv 83 +sK+fakd+++k+g++ta+y++ftd e+a +y+++ + ++ V+Ka+glaagKgv++a++++ea +++++++++k f ag++v 23726_FusoPortal_Gene_1398 101 GSKAFAKDFMQKYGVKTAKYQSFTDKEKAIKYLDKISYPV-VIKASGLAAGKGVVIAQNRKEAEETLNDMMTNKVFAAAGDTV 182 69**************************************.****************************************** PP EEEE---SEEEEEEEEECTTEEEE---BEEEEEEECCCEEEEECECEEEES-TTS-HHHHHHHHHHTHHHHHHHHHCTT---E CS GARS_A 84 viEelleGeEvsllalvdgktvkplplaqdhkrvlegDkgpnTGGmGayspapvvteellekikeeileptveglkkegipfk 166 viEe+l+G E+s+l+++d + ++p+ +a+dhk++ e ++g+nTGGmG+++p p t+ ++ek ++il+pt++g+k+e+++f+ 23726_FusoPortal_Gene_1398 183 VIEEFLDGVEISVLSITDSEVIIPFISAKDHKKISEKETGLNTGGMGVIAPNPYYTKTIEEKFIQNILNPTLKGIKAEKMNFV 265 *********************************************************************************** PP EEEEEEEEEETTEEEEEEEESS--TTCH CS GARS_A 167 GvLyaglmlvedgpkvlefnvRfgDpet 194 G+++ glm+ + ++le+n+R gDpet 23726_FusoPortal_Gene_1398 266 GIIFFGLMVANGEVYLLEYNMRMGDPET 293 **********999**************8 PP >> GARS_N Phosphoribosylglycinamide synthetase, N domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 107.3 0.1 4e-34 4.7e-31 1 90 [] 1 100 [. 1 100 [. 0.93 Alignments for each domain: == domain 1 score: 107.3 bits; conditional E-value: 4e-34 EEEEEEESSHHHHHHHHHHTTSTTESEEEEEE--CGG...........TTHHHHHHHHHHCTESEEEE-SHHHHHTTHHHHHH CS GARS_N 1 mkvLvvGsGGRehalawklaqspkvekvyvapgNagt...........edlealvefakeekidlvvvGpeapLvaGvadale 72 mkvL+vGsGGReha+awk++q++kv+k+++a gNa + +++++fa +ek+dl++vG e+ Lv+G++d+++ 23726_FusoPortal_Gene_1398 1 MKVLIVGSGGREHAIAWKISQNSKVDKIFAASGNAYNkviknceninlKTSDDILNFAIKEKVDLTIVGSEELLVDGIVDKFQ 83 9**********************************998887776666544457*****************************8 PP HHHT-EEES--CCCCHHH CS GARS_N 73 eekgikvfGpskeaAqlE 90 e+ ++++fGp+keaA+lE 23726_FusoPortal_Gene_1398 84 EN-NLTIFGPNKEAAMLE 100 88.**************9 PP >> GARS_C Phosphoribosylglycinamide synthetase, C domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 95.2 0.0 1.6e-30 1.9e-27 1 79 [. 328 419 .. 328 420 .. 0.97 Alignments for each domain: == domain 1 score: 95.2 bits; conditional E-value: 1.6e-30 EEEEEEEETTTTSS--ST-EEBS........TTEEEEESSEE.....EEE-SSEEEEEEEEESSHHHHHHHHHHHHTTCB-TT CS GARS_C 1 avgvvlaskGYPgsyekgkeitg........egvkvfhagtk.....lvtsGGRvlavvavgetleeArakayeavkkikfeg 70 a++vv+a++GYP +yekg+ i+g +++k+f ag+k ++t+GGRvl+vv++ ++le+A+++ay++vk+i+f++ 23726_FusoPortal_Gene_1398 328 ACCVVMAAGGYPVKYEKGNFISGlekfdsnkSDNKIFFAGVKeendkFYTNGGRVLNVVSIKDSLEKAIEEAYKNVKEISFKD 410 79*******************99*******98889*****99999999*********************************** PP EE--STTTH CS GARS_C 71 lfyRkDIGa 79 +yRkDIG+ 23726_FusoPortal_Gene_1398 411 NYYRKDIGT 419 *******96 PP >> CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 49.9 0.3 2.2e-16 2.6e-13 2 180 .. 103 288 .. 102 295 .. 0.85 2 ? -1.0 0.0 0.81 9.7e+02 47 74 .. 376 403 .. 375 412 .. 0.79 Alignments for each domain: == domain 1 score: 49.9 bits; conditional E-value: 2.2e-16 HHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EE CS CPSase_L_D2 2 kesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvl 84 k ak+ ++k +v++++ ++ ++ e+a++ ++i+yPv+ika+ GkG +a+n++e +e+++ +++ a + ++v 23726_FusoPortal_Gene_1398 103 KAFAKDFMQKYGVKTAKYQSF--TDKEKAIKYLDKISYPVVIKASGLAAGKGVVIAQNRKEAEETLNDMMTNKVFAAAGDTVV 183 5668999**********9999..9********************************************99999999999**** PP EEE--SSSEEEEEEEEEETTS-EEE..EEEEE..ECCEC....TCCCCEEEES....-SS--HHHHHHHHHHHHHHHHHHT-E CS CPSase_L_D2 85 vekslkgpkeiEvevlrDakgnvit..vcere..nslql....rtqkvievAP....sqtLtdeerqalreaavkvvrevgvv 155 +e++l+g +E+ vl+ ++ vi+ + ++ + + t+ + ++AP ++t++++ q + + ++k +++ ++ 23726_FusoPortal_Gene_1398 184 IEEFLDG---VEISVLSITDSEVIIpfISAKDhkKISEKetglNTGGMGVIAPnpyyTKTIEEKFIQNILNPTLKGIKAEKMN 263 ******8...7888888777777652233333113333356668999999999333336889999999*************** PP EEEEEEEEEETTTTEEEEEEEESS- CS CPSase_L_D2 156 gagtveflldpkskeyyviEvNtRl 180 g + f l ++e y++E N R+ 23726_FusoPortal_Gene_1398 264 FVGIIFFGLMVANGEVYLLEYNMRM 288 *********999**********997 PP == domain 2 score: -1.0 bits; conditional E-value: 0.81 TCCTTTTEEEESSHHHHHHHHHHHHHHH CS CPSase_L_D2 47 fglGGkGmrvarneeelaelvkkalaea 74 ++ GG+ v++ ++ l++++++a ++ 23726_FusoPortal_Gene_1398 376 YTNGGRVLNVVSIKDSLEKAIEEAYKNV 403 6789999999999999999999988765 PP >> ATP-grasp ATP-grasp domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.4 1.1 1e-10 1.2e-07 2 88 .. 111 203 .. 110 290 .. 0.82 Alignments for each domain: == domain 1 score: 31.4 bits; conditional E-value: 1e-10 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SE CS ATP-grasp 2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfek 76 +k g+++++++ ++ke++ + ++++ +pvv+K + + GkG + ++++++e++l+ + ++ +v++Eef + + 23726_FusoPortal_Gene_1398 111 QKYGVKTAKYQSFTDKEKAIKYLDKISYPVVIK-ASGLAAGKGVVIAQNRKEAEETLNDMmtnkvfaaAGDTVVIEEFLD-GV 191 789******************************.556668**************999998899999999999******99.78 PP EEEEEEEEETTC CS ATP-grasp 77 ElsvlvvrsaeG 88 E+svl + + e 23726_FusoPortal_Gene_1398 192 EISVLSITDSEV 203 ****99987765 PP >> ATP-grasp_3 ATP-grasp domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 27.7 0.2 1.8e-09 2.1e-06 8 158 .. 107 288 .. 101 291 .. 0.69 Alignments for each domain: == domain 1 score: 27.7 bits; conditional E-value: 1.8e-09 HHHHTTT.S---...........-EESS--.....SSSEEEEESS-------B--SS--TTE...................EE CS ATP-grasp_3 8 ykkLkeagvkvP.......tkleaeeleee.....ekklvvKprdGaggesvrvveekeeaeaaieeve............lv 66 +++++ gvk+ ++ + +++v+K + a+g++v+++++++eae++++ + ++ 23726_FusoPortal_Gene_1398 107 KDFMQKYGVKTAkyqsftdKEKAI-----KyldkiSYPVVIKASGLAAGKGVVIAQNRKEAEETLNDMMtnkvfaaagdtvVI 184 555555577777442222222223.....2444459****************************99988899*********** PP EE---SEEEEEEEEE.SSSEEEEEEEEEEEET.....TEEEEEEES----H.......HHHHHHHHHHHHTTST.T--EEEEE CS ATP-grasp_3 67 qefieGkplSvsllsdgekvlvlavnrqliekaeke.fvyaGnvtpietel.......keevvelaeevvekle.glaGyvGv 140 ef++G ++Sv + d e + ++ + + + eke +G++ i + ++ ++++ + +++ ++ + + +vG+ 23726_FusoPortal_Gene_1398 185 EEFLDGVEISVLSITDSEVIIPFISAKDHKKISEKEtGLNTGGMGVIAPNPyytktieEKFIQNILNPTLKGIKaEKMNFVGI 267 *****************999999999998887777764445555433322222011313334445555555565644455555 PP ...EEEESS.SEEEEEEESS- CS ATP-grasp_3 141 ...DlvlkdeepyviEvNPRl 158 l+++++e y++E N R+ 23726_FusoPortal_Gene_1398 268 iffGLMVANGEVYLLEYNMRM 288 222556888999999999997 PP >> RimK RimK-like ATP-grasp domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.2 0.1 7.9e-09 9.4e-06 7 82 .. 106 188 .. 101 214 .. 0.81 Alignments for each domain: == domain 1 score: 25.2 bits; conditional E-value: 7.9e-09 HHHHHHHTT-----EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH.GGG--........EEEE CS RimK 7 slklLakakikvpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea.lkeai........lvqe 80 + + k ++k+ + + d+e+a k+++ki + Pvv+K + G +vv+a+++++++++l+ +++++ ++ e 23726_FusoPortal_Gene_1398 106 AKDFMQKYGVKTAKYQSFTDKEKAIKYLDKI--SYPVVIKASGLAAGKGVVIAQNRKEAEETLNDmMTNKVfaaagdtvVIEE 186 55677888999999999**************..7****************************988655555444444445555 PP E- CS RimK 81 yi 82 ++ 23726_FusoPortal_Gene_1398 187 FL 188 55 PP >> ATP-grasp_4 ATP-grasp domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.9 0.2 2.1e-08 2.5e-05 1 86 [. 136 213 .. 136 225 .. 0.78 Alignments for each domain: == domain 1 score: 23.9 bits; conditional E-value: 2.1e-08 ATP-grasp_4 1 islPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepvilni 83 is+PvviK s ++ GV +++n++e +++++++ ++ + ++ ++++++Ee+++G E++v d+e +++ 23726_FusoPortal_Gene_1398 136 ISYPVVIKASGLAAGKGVVIAQNRKEAEETLNDMMTN-----KVFA---AAGDTVVIEEFLDGVEISVLSITDSEVIIPFISA 210 689**************************99999866.....2233...3578899************888887744444444 PP ATP-grasp_4 84 lkk 86 ++ 23726_FusoPortal_Gene_1398 211 KDH 213 444 PP >> ATP-grasp_2 ATP-grasp domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.2 0.4 1.4e-07 0.00016 7 81 .. 106 175 .. 104 193 .. 0.90 Alignments for each domain: == domain 1 score: 21.2 bits; conditional E-value: 1.4e-07 HHHHHHCTT----SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCCCTTCEEEESSHHHHHHHHHCCTTSEEE CS ATP-grasp_2 7 akeilakygvkvpegevaesaeeaeeaakklgekelvvKaQvlaGGRGKagGvklvkskeeakeaakellgkelv 81 ak+ ++kygvk+++ + +++e+a + ++k++ + v+Ka la G+ Gv ++++ +ea+e+ ++++ +++ 23726_FusoPortal_Gene_1398 106 AKDFMQKYGVKTAKYQSFTDKEKAIKYLDKISYPV-VIKASGLAAGK----GVVIAQNRKEAEETLNDMMTNKVF 175 899*****************************999.****9888876....7******************99987 PP >> Dala_Dala_lig_C D-ala D-ala ligase C-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.9 1.2 7.9e-08 9.5e-05 2 96 .. 110 202 .. 109 289 .. 0.76 2 ? -3.1 0.1 3.5 4.2e+03 54 73 .. 385 404 .. 383 410 .. 0.73 Alignments for each domain: == domain 1 score: 21.9 bits; conditional E-value: 7.9e-08 HHHTT--B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHT......T-SCEEEE CS Dala_Dala_lig_C 2 lkaaGlpvvpyvvlekeeakeekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafk......ydekvlvE 78 +++ G+++++y+ ++ +e+ + ++++ypv++K++ + Gv +++++e +e +++ + +v++E 23726_FusoPortal_Gene_1398 110 MQKYGVKTAKYQSFTDKEKAIKY-------LDKISYPVVIKASGLAAGKGVVIAQNRKEAEETLNDMMTnkvfaaAGDTVVIE 185 78899999999999887766655.......899***********************99999999887651111114589**** PP E--ESEEEEEEEEETSSC CS Dala_Dala_lig_C 79 eaiegreievavlgnekl 96 e+++g ei v + ++ 23726_FusoPortal_Gene_1398 186 EFLDGVEISVLSIT-DSE 202 *****999875444.233 PP == domain 2 score: -3.1 bits; conditional E-value: 3.5 EESSGGGHHHHHHHHHTT-S CS Dala_Dala_lig_C 54 kveseeelkeaieeafkyde 73 v+ ++ l++aieea k + 23726_FusoPortal_Gene_1398 385 VVSIKDSLEKAIEEAYKNVK 404 56667888999999887655 PP >> ATP-grasp_5 ATP-grasp domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.7 0.2 1.8e-07 0.00022 15 54 .. 106 145 .. 96 202 .. 0.76 Alignments for each domain: == domain 1 score: 20.7 bits; conditional E-value: 1.8e-07 ATP-grasp_5 15 akelleaygipvvetrlassaeeaveaaeeigypvvlKiv 54 ak+ ++ yg+++++ + +++e+a+++ ++i ypvv+K 23726_FusoPortal_Gene_1398 106 AKDFMQKYGVKTAKYQSFTDKEKAIKYLDKISYPVVIKAS 145 78999*********************************86 PP >> ATPgrasp_Ter ATP-grasp in the biosynthetic pathway with Ter operon # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.3 2.5e-06 0.0029 61 218 .. 52 195 .. 24 221 .. 0.86 2 ? -1.2 0.0 0.49 5.9e+02 275 287 .. 276 288 .. 270 289 .. 0.87 3 ? -1.8 0.0 0.76 9e+02 155 182 .. 340 367 .. 333 394 .. 0.84 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 2.5e-06 ATPgrasp_Ter 61 efvldfckkheidvflpgrellllaarreeFeaaGvrllvgaasetlellddKvafyaaaeakglpvpeaelvttaeeleaal 143 + +l+f+ k+++d+ + g e ll+ ++F++ ++ +++ e+ l K+ + +++ g++ +++ +t+ e+ + l 23726_FusoPortal_Gene_1398 52 DDILNFAIKEKVDLTIVGSEELLVDGIVDKFQENNLTIFGPNK-EAAMLEGSKAFAKDFMQKYGVKTAKYQSFTDKEKAIKYL 133 789**********************************999999.77777788888888999999***********98888888 PP ATPgrasp_Ter 144 aklrasgeklcvKPavgiggrGFrvidesadsleallkpesrkislaelvealssaeefppllvmeyLegpEySv 218 +k++ + +++K + + g+G+ + +++ ++ e+l+ + ++++ +a ++ ++++ e+L+g E+Sv 23726_FusoPortal_Gene_1398 134 DKISYP---VVIKASGLAAGKGVVIAQNRKEAEETLN-----DMMTNKVFAAAGD-----TVVIEEFLDGVEISV 195 888888...9*************88887777777776.....6667777777777.....89************9 PP == domain 2 score: -1.2 bits; conditional E-value: 0.49 ATPgrasp_Ter 275 dgqpkLLEiNpRp 287 +g+ +LLE N+R+ 23726_FusoPortal_Gene_1398 276 NGEVYLLEYNMRM 288 5679********9 PP == domain 3 score: -1.8 bits; conditional E-value: 0.76 ATPgrasp_Ter 155 vKPavgiggrGFrvidesadsleallkp 182 vK+ +g++ +G +d + ++ + ++ + 23726_FusoPortal_Gene_1398 340 VKYEKGNFISGLEKFDSNKSDNKIFFAG 367 899*************999998888844 PP >> GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 1.3e-05 0.015 1 89 [. 1 89 [. 1 91 [. 0.89 2 ? -2.2 0.0 5.6 6.6e+03 31 55 .. 98 127 .. 93 156 .. 0.67 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 1.3e-05 EEEEEETTSHHHHHCHHHHHCTTTTEEEEEEECSSHHHHHHH...HHHTTHEEESSHHHHHCCTTESEEEE-S-GGGHHHHHHHH CS GFO_IDH_MocA 1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeav...aesfgveaysdleelladpeidavivatpngtheelakaa 82 ++v+i+G+ g++h+ +++ s ++ +v ++ + ++ +v +e+ +++ +d+ + + ++++d+ iv++ + ++ ++ 23726_FusoPortal_Gene_1398 1 MKVLIVGS--GGREHAIAWKIS-QNSKVDKIFAASGNAYNKViknCENINLKTSDDILNFAIKEKVDLTIVGSEELLVDGIVDKF 82 6899***9..69**********.999***************99999999**********9999**********998877777777 PP HHTT-EE CS GFO_IDH_MocA 83 leagkhv 89 e++ + 23726_FusoPortal_Gene_1398 83 QENNLTI 89 7776655 PP == domain 2 score: -2.2 bits; conditional E-value: 5.6 EECSSHHHHHHHHHHTTHE.....EESSHH CS GFO_IDH_MocA 31 lldpdaeraeavaesfgve.....aysdle 55 l+ +++ a+++ +++gv+ +++d e 23726_FusoPortal_Gene_1398 98 MLEGSKAFAKDFMQKYGVKtakyqSFTDKE 127 566667778888888888866433444444 PP >> CoA_binding CoA binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 0.00036 0.43 5 70 .. 2 68 .. 1 74 [. 0.82 2 ? -2.0 0.1 4.6 5.5e+03 47 47 .. 152 152 .. 84 183 .. 0.58 3 ? -2.9 0.0 9.1 1.1e+04 41 61 .. 379 399 .. 376 406 .. 0.65 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00036 EEEEETTTSHHHHHH.HHHHHHHHECEEEEEEC-TTTTTCEETTEEEESCHHHHHHHC.TTTEEEEES CS CoA_binding 5 kviviGagglgiagl.yhfkeklkygikavfgvnprkvgtevlglpvyksvdeleekt.evdvavitv 70 kv+++G gg+++a++ +++ + +i a+ g ++kv ++ +++ + + d++ ++ +++v ++ v 23726_FusoPortal_Gene_1398 2 KVLIVGSGGREHAIAwKISQNSKVDKIFAASGNAYNKVIKNCENINLK-TSDDILNFAiKEKVDLTIV 68 8**************6666666666888999****************9.9999999988655555554 PP == domain 2 score: -2.0 bits; conditional E-value: 4.6 T CS CoA_binding 47 g 47 g 23726_FusoPortal_Gene_1398 152 G 152 3 PP == domain 3 score: -2.9 bits; conditional E-value: 9.1 TTCEETTEEEESCHHHHHHHC CS CoA_binding 41 vgtevlglpvyksvdeleekt 61 +g+ + + +++s+++++e+ 23726_FusoPortal_Gene_1398 379 GGRVLNVVSIKDSLEKAIEEA 399 566666677777777777764 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (427 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1014 (0.060675); expected 334.2 (0.02) Passed bias filter: 609 (0.0364409); expected 334.2 (0.02) Passed Vit filter: 66 (0.00394926); expected 16.7 (0.001) Passed Fwd filter: 14 (0.000837721); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 14 [number of targets reported over threshold] # CPU time: 0.47u 0.34s 00:00:00.81 Elapsed: 00:00:00.45 # Mc/sec: 2758.45 // [ok]