# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1401.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1401 [L=432] Description: # 1507990 # 1509285 # 1 # ID=1_1401;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.248 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-22 80.5 47.2 1.2e-20 73.9 19.1 2.1 2 Na_H_antiporter Na+/H+ antiporter family ------ inclusion threshold ------ 2.3 6.4 40.6 0.7 8.2 23.3 2.3 2 DcuC C4-dicarboxylate anaerobic carrier Domain annotation for each model (and alignments): >> Na_H_antiporter Na+/H+ antiporter family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.5 20.2 3.4e-06 0.028 104 250 .. 6 149 .. 1 149 [. 0.76 2 ! 73.9 19.1 1.4e-24 1.2e-20 1 300 [. 149 426 .. 149 428 .. 0.84 Alignments for each domain: == domain 1 score: 13.5 bits; conditional E-value: 3.4e-06 Na_H_antiporter 104 alvaivkafivalafqntdvatalvvgalaglivatllelaslseidkllnr...GiksmlgaililllAwgiggvlealgvt 183 ++ ++ +iv l+++ +v+ al++g l+ + + ++++ + l+++ G+ ++ ++l+ ++ i+ + +a g t 23726_FusoPortal_Gene_1401 6 VILLFSLSLIVCLLLK-YSVVYALIIGYLIFISYGFMKGH----NLIVLIKKsfeGVLTVKNILLVFIFIGMITALWRASG-T 82 3345666677777665.55666666666666666666664....4555555500055555566777777777888888999.9 PP Na_H_antiporter 184 eslvsslakgvvskgllplilflvallvafatGtswgtigIilpiavplaaklgisllalvraveag 250 +++ + ++++s+ l+l++fl++ + ++ +Gts gt + i+ i+ ++++++gi+++ + +av++g 23726_FusoPortal_Gene_1401 83 IAFIVYMGSKLISPSILILLTFLLCSILSVLIGTSLGTAATIGVICFSIGKAMGINPYYVGGAVLSG 149 99*******************************************************9999999876 PP == domain 2 score: 73.9 bits; conditional E-value: 1.4e-24 Na_H_antiporter 1 vavfgdkssplsdtvgliagilktdlieeiaalgmlvqsipanvysifallvvglvvl...llrdigamlraeaeareleeke 80 +++fgd +sp+s + lia+++kt+l+++i+ l m+ +si+ +v++ +++l++g+ + ++ ++ ++ +++++ + 23726_FusoPortal_Gene_1401 149 GIYFGDRCSPMSTSALLIAELTKTNLYTNIK-L-MIKTSIIPFVMTCLFYLFLGFNSTvsnISVNVTEIFKQ---NYNINIIV 226 79*****************************.7.*********************99874444444444444...55555555 PP Na_H_antiporter 81 ltklpiavliiltlskmpytgalalvaivkafivalafqntdvatalvvgalaglivatllelaslseidkllnrG.iksmlg 162 ++ p++ +iil++ k + + l+ iv+ fi+a++ q+ +++ + + i+ +++ ++++ +++ G i sm+ 23726_FusoPortal_Gene_1401 227 II--PAILIIILSILKINVKKTMLLS-IVVSFIIAMFSQKENIV-----SLINYCIYGYHHPN---EKLNLMMKGGgILSMVN 298 55..**********988888888855.666******99996333.....44455566777776...7799999999******* PP Na_H_antiporter 163 aililllAwgiggvlealgvteslvsslakgvvskgllplilflvallvafatGtswgtigIilpiavplaaklgisllalvr 245 ++li+ ++ +++g++++++++ s +++ +k + +k + +++fl++++ + ++++ i++++++++++ +k + + 23726_FusoPortal_Gene_1401 299 VGLIVGISSSYSGIFKETKMLVS-LKKYLKDFSKKTSNYFVIFLSSIVSGAIACNQSLGIILTNELCEEIVDKQKRAI----- 375 *******************6655.566778888899999*******************************98866555..... PP Na_H_antiporter 246 aveaggtlgdhlsPisdttilsstglnadhidhvsytqlpyallvapitailllv 300 ++e+ +l l+P+++ ++++ +l + ++s ++++l+ p+ + l+v 23726_FusoPortal_Gene_1401 376 ILENTVILLTGLIPWNTAMVVPLKTL---DVGVMS-GLFAFYLYFLPLWNLFLGV 426 99************************...888899.9999999888876666665 PP >> DcuC C4-dicarboxylate anaerobic carrier # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.2 23.3 8.4e-05 0.7 265 461 .. 6 197 .. 2 201 .. 0.81 2 ? 4.0 9.3 0.0015 13 246 373 .. 213 348 .. 202 352 .. 0.64 Alignments for each domain: == domain 1 score: 8.2 bits; conditional E-value: 8.4e-05 DcuC 265 ilvllglafvivngewylpeiavlflamgilvefiaklnglkekeiveafveGaaellgvalvvglargveviaeggmiidti 347 +++l++ +++ + l +v+ l++g l+ + + + +k ++ + + ++ +l+v+++ + +++i +++ti 23726_FusoPortal_Gene_1401 6 VILLFS--LSLIVC-LLLKYSVVYALIIGYLIFISY--GFMKGHNLIVLIKKSFEGVLTVKNILLVFIFIGMITALWRASGTI 83 444443..344443.777888889999999986655..456666666556666666666677777666777777777777777 PP DcuC 348 lnlisnalsglsgivfilvmlliqallafvvpSgsglavltmplmapLAdlvgvpralvvlafqlasgllniisPtsgvvvat 430 ++ + +s +++il++ l+ +l+++++ + g a+ + ++++ +g+++ +v a ++ +++ sP+s + 23726_FusoPortal_Gene_1401 84 AFIVYMGSKLISPSILILLTFLLCSILSVLIGTSLGTAATIGVICFSIGKAMGINPYYVGGAVLSGIYFGDRCSPMSTSALLI 166 77777777777789***************************************************************999999 PP DcuC 431 lglarvsfgtwvkfvakllavllvvsillli 461 + l + ++ t +k ++k ++ +v+++l+ + 23726_FusoPortal_Gene_1401 167 AELTKTNLYTNIKLMIKTSIIPFVMTCLFYL 197 *************************998755 PP == domain 2 score: 4.0 bits; conditional E-value: 0.0015 DcuC 246 eesfskrqkvvlilfvlplilvll.glafvivngewylpeiavlflamgi......lvefiak..lnglkekeiveafveG.. 317 +e+f k++ ++ i++++p il+++ ++ + +v+ l i+v+f ++++ +v +i + ++ + +e ++ ++G 23726_FusoPortal_Gene_1401 213 TEIF-KQNYNINIIVIIPAILIIIlSILKINVKK-TMLLSIVVSF-IIAMfsqkenIVSLINYciYGYHHPNEKLNLMMKGgg 292 4445.55556667777776666550433333332.2222222222.2222112222555665576677777777777777511 PP DcuC 318 aaellgvalvvglargveviaeggmiidtilnlisnalsglsgivfilvmlliqal 373 +++ v l+vg+ + i +++ ++ +++++++ + + s+ +i + ++ + 23726_FusoPortal_Gene_1401 293 ILSMVNVGLIVGISSSYSGIFKETKMLVSLKKYLKDFSKKTSNYFVIFLSSIVSGA 348 66899999**********************************98888777777655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (432 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1177 (0.0704284); expected 334.2 (0.02) Passed bias filter: 299 (0.0178913); expected 334.2 (0.02) Passed Vit filter: 39 (0.00233365); expected 16.7 (0.001) Passed Fwd filter: 8 (0.000478698); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.36 # Mc/sec: 3488.44 // [ok]