# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1403.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1403 [L=306] Description: # 1510892 # 1511809 # 1 # ID=1_1403;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.249 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.5e-130 434.2 13.9 2.9e-130 434.0 13.9 1.0 1 DUF4299 Domain of unknown function (DUF4299) Domain annotation for each model (and alignments): >> DUF4299 Domain of unknown function (DUF4299) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 434.0 13.9 1.7e-134 2.9e-130 1 301 [] 2 303 .. 2 303 .. 0.99 Alignments for each domain: == domain 1 score: 434.0 bits; conditional E-value: 1.7e-134 DUF4299 1 sisfyiknkkkllgyqkvlkvkevldllkeklesynidendidlekllksplndleelllgvegkssrgfelsyadekkdYvv 83 sisfy+knkkk+lgy++vl+v+e+l++l+++l+syn+++ i++++ll sp++++e+ll+g+++ s+rgfelsy++++kdY+v 23726_FusoPortal_Gene_1403 2 SISFYVKNKKKFLGYEAVLNVEEALTILDKELNSYNTGN--IEVNDLLLSPVSNYECLLIGEDKVSARGFELSYDNKNKDYAV 82 89*************************************..****************************************** PP DUF4299 84 rvftpsseedwqlalefikrlaeklgseivseegetytveaidtfdyeedilegik...dileekkekeylvfgiarpvvlnk 163 r+ftpss+edw+lale+ik+la+k++seiv+e+ge+ytv++id+f+ye+dil+gi+ +++++ ++++y++fgi+r+v++n+ 23726_FusoPortal_Gene_1403 83 RIFTPSSREDWLLALEYIKALAKKFNSEIVNERGEVYTVDNIDKFNYERDILYGIEvitSNMKSGEADNYAIFGIDRVVSFNQ 165 ********************************************************99999********************** PP DUF4299 164 eevekllnsedeveaFsafvkeiqyldAYsarqqFfrdeegkkvvgaYvltedvrTiLPykpsvefenveivkdeevkswkis 246 e+++k++ns++++++Fs++vkeiqyldAYsa+qqF+++++++k++gaY+lt+++rTiLPykpsvefen++ivk++e+++w+i+ 23726_FusoPortal_Gene_1403 166 EMLDKINNSDSPIDTFSNIVKEIQYLDAYSAHQQFYKNKTDGKIIGAYTLTQNLRTILPYKPSVEFENSDIVKNDEISFWNIA 248 *********************************************************************************** PP DUF4299 247 lvaingDendpesykvigeleyedfieklskdkykklDasyilvepLskeellei 301 lv+ingDendp+sy+vi +l+y+dfi+kl+ +kyk++Dasyi+vepLskee+l++ 23726_FusoPortal_Gene_1403 249 LVTINGDENDPNSYQVIRNLNYDDFIKKLPINKYKSIDASYIMVEPLSKEEILDL 303 ****************************************************985 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (306 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 638 (0.0381762); expected 334.2 (0.02) Passed bias filter: 374 (0.0223791); expected 334.2 (0.02) Passed Vit filter: 29 (0.00173528); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.29u 0.25s 00:00:00.54 Elapsed: 00:00:00.35 # Mc/sec: 2541.58 // [ok]