# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1410.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1410 [L=259] Description: # 1517373 # 1518149 # 1 # ID=1_1410;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=3-4bp;gc_cont=0.210 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.052 13.2 0.3 0.058 13.0 0.3 1.2 1 ATP-synt ATP synthase Domain annotation for each model (and alignments): >> ATP-synt ATP synthase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.3 3.4e-06 0.058 88 170 .. 55 126 .. 37 228 .. 0.77 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 3.4e-06 HHHHHHHHHHHHHHHHHTTTECEEEEESHHHHHHH.HH--EEEEES--TTS--CHHHHHHHHHHHHHHHTTS-SEEEEEEEEE CS ATP-synt 88 fNsnvikkaeklieelkkegevklvvvGkkgreyf.krvevaleftgvskkptfeeaseiaeeildlyeegeideveivynkf 169 fN+n+ ++++ +++ ++++k+++vG+k+ + f + +v +t + ++++ ++ia++i++ y + d ei++n 23726_FusoPortal_Gene_1410 55 FNNNLKENIKYFKH----NNHNKVLIVGEKIVHLFfTEDKV---YT----HFDIKNPEKIADHIYK-YWAYYTDTKEIIFNDE 125 89999999955543....23469**********88444333...33....4678999999999986.7777788888888865 PP S CS ATP-synt 170 k 170 k 23726_FusoPortal_Gene_1410 126 K 126 4 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (259 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1036 (0.0619914); expected 334.2 (0.02) Passed bias filter: 376 (0.0224988); expected 334.2 (0.02) Passed Vit filter: 31 (0.00185495); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.30u 0.26s 00:00:00.56 Elapsed: 00:00:00.38 # Mc/sec: 1981.37 // [ok]