# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1456.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1456 [L=293] Description: # 1559489 # 1560367 # -1 # ID=1_1456;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.212 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.019 14.4 0.5 0.048 13.1 0.5 1.6 1 Dala_Dala_lig_C D-ala D-ala ligase C-terminus 0.052 13.3 0.0 0.11 12.3 0.0 1.4 1 DUF3658 Protein of unknown function Domain annotation for each model (and alignments): >> Dala_Dala_lig_C D-ala D-ala ligase C-terminus # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.5 5.8e-06 0.048 71 131 .. 16 74 .. 4 83 .. 0.81 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 5.8e-06 T-SCEEEEE--ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-H.HHHHC.TT-EEESS---- CS Dala_Dala_lig_C 71 ydekvlvEeaiegreievavlgneklevsevgeivvkkgfydy.eakysddkaqlevpakle 131 e++++Ee+ie +ei+ ++ +n+ +e ++ ei ++ f dy ky + ++++vp k++ 23726_FusoPortal_Gene_1456 16 VKEEIFIEETIENKEINLTLKENDFFE--TASEIKFNSMFLDYfPIKYR-NFSKMFVPLKIT 74 5689***************99988766..578999*******9457996.677778887765 PP >> DUF3658 Protein of unknown function # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.0 1.3e-05 0.11 25 87 .. 185 247 .. 172 251 .. 0.92 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 1.3e-05 DUF3658 25 renaeLRiwkdgklvsveedyfDdlileaakkefqkaarligevlghldqlisDefleyRire 87 + ++LR++k +l s+e +++ +l+++++ ++++ + +++ + ++ +++D++ +R+++ 23726_FusoPortal_Gene_1456 185 KLVTDLRLYKYKNLSSAENSFYELDLLDKCNNLVESSSWVNAKIKCDSNVNVGDTLTINRLHK 247 55679*******************************************************987 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (293 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 809 (0.0484083); expected 334.2 (0.02) Passed bias filter: 296 (0.0177118); expected 334.2 (0.02) Passed Vit filter: 18 (0.00107707); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.28u 0.23s 00:00:00.51 Elapsed: 00:00:00.34 # Mc/sec: 2505.18 // [ok]