# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1458.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1458 [L=480] Description: # 1561361 # 1562800 # 1 # ID=1_1458;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.229 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 7.1e-41 139.1 1.0 2.4e-24 85.6 0.0 2.3 2 PLDc_2 PLD-like domain 1.4e-14 53.5 0.6 9e-08 31.9 0.2 2.6 2 PLDc Phospholipase D Active site motif 1.3e-08 34.5 10.0 2.6e-08 33.5 10.0 1.5 1 PLDc_N Phospholipase_D-nuclease N-terminal 0.0023 17.0 0.1 0.33 10.0 0.0 2.7 2 Regulator_TrmB Archaeal transcriptional regulator TrmB ------ inclusion threshold ------ 0.021 14.3 0.6 1.4 8.4 0.0 3.3 3 DUF1669 Protein of unknown function (DUF1669) Domain annotation for each model (and alignments): >> PLDc_2 PLD-like domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.1 0.2 1.6e-17 5.5e-14 1 129 [. 132 268 .. 132 270 .. 0.85 2 ! 85.6 0.0 7e-28 2.4e-24 2 128 .. 320 442 .. 319 447 .. 0.93 Alignments for each domain: == domain 1 score: 52.1 bits; conditional E-value: 1.6e-17 PLDc_2 1 liqliksAkksidiatyyf...vsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfet... 77 l+++i++Akk i + +++f +ei+d l+++ak+gv+v++++d v+ a+++ + ++gv++++f + 23726_FusoPortal_Gene_1458 132 LKKEIANAKKFINMEYFIFqfdGIGKEIADLLIEKAKEGVEVNLIIDG-------VNLANFRLKLYF-KNTGVNLHLFFRtyi 206 6789***************666667889*******************8.......666778877778.999999999984355 PP PLDc_2 78 ..ll....gslHaKlylidgktvivGSsNltkrgl.....dlnlElnvviedkelakeleeeF 129 ++ ++H+K+ +id+++++vG++N+ +++l +++++ v+i++ +++ +e+eF 23726_FusoPortal_Gene_1458 207 piFNirlnYRNHRKVTIIDNRVAFVGGMNIGDEYLgkgkiGYWRDTSVKIYGD-IVSSFEKEF 268 552255569**************************999999999999999987.688888888 PP == domain 2 score: 85.6 bits; conditional E-value: 7e-28 PLDc_2 2 iqliksAkksidiatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetllgslHa 84 i+li++A+ks+ i+t+yfv+d+ +ld l+ a +g +v+i++++ k+d+++ ++ + el l+ g++++ +e g++H+ 23726_FusoPortal_Gene_1458 320 IKLIQEARKSVFIQTPYFVPDDLLLDTLKSAVLSGIDVKIMIPN-KADHPFIYWVNQYYVWEL-LRLGANIYRYEN--GFIHS 398 789***************99999********************8.788999999999999999.********9865..899** PP PLDc_2 85 KlylidgktvivGSsNltkrgldlnlElnvviedkelakeleee 128 K++l+d+++v vG++N+++r++ ln+E+n+ i++ke+a+ ++ + 23726_FusoPortal_Gene_1458 399 KTILVDEEVVSVGTCNFDYRSFYLNFEINLNIYNKEVANSFKVQ 442 *************************************9998765 PP >> PLDc Phospholipase D Active site motif # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 31.9 0.2 2.7e-11 9e-08 2 28 .] 214 240 .. 213 240 .. 0.94 2 ! 19.5 0.0 2.2e-07 0.00072 3 28 .] 394 419 .. 392 419 .. 0.93 Alignments for each domain: == domain 1 score: 31.9 bits; conditional E-value: 2.7e-11 TBEE---EEEETTTEEEEE---SSHHH CS PLDc 2 mgthHqKivivDdrvafvGgaNLcdgr 28 ++++H+K i+D+rvafvGg+N+ d++ 23726_FusoPortal_Gene_1458 214 NYRNHRKVTIIDNRVAFVGGMNIGDEY 240 689********************9987 PP == domain 2 score: 19.5 bits; conditional E-value: 2.2e-07 BEE---EEEETTTEEEEE---SSHHH CS PLDc 3 gthHqKivivDdrvafvGgaNLcdgr 28 g+ H+K++ vD++v+ vG+ N+++++ 23726_FusoPortal_Gene_1458 394 GFIHSKTILVDEEVVSVGTCNFDYRS 419 788********************996 PP >> PLDc_N Phospholipase_D-nuclease N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.5 10.0 7.8e-12 2.6e-08 2 41 .. 22 63 .. 21 63 .. 0.95 Alignments for each domain: == domain 1 score: 33.5 bits; conditional E-value: 7.8e-12 PLDc_N 2 lwiialidiir.d.rnpssklaWllvilllPvlGailYllfG 41 ++++ +i+ii+ + +np ++++W++++ l+P++G+++Yl+fG 23726_FusoPortal_Gene_1458 22 ANLFFIIVIIMiEkKNPLYTILWIFLLTLVPYVGFFIYLFFG 63 78999******989***************************9 PP >> Regulator_TrmB Archaeal transcriptional regulator TrmB # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 4.2 0.1 0.006 20 36 58 .. 157 179 .. 131 196 .. 0.83 2 ! 10.0 0.0 9.8e-05 0.33 8 73 .. 312 378 .. 309 409 .. 0.86 Alignments for each domain: == domain 1 score: 4.2 bits; conditional E-value: 0.006 HHHHHHHHHHHHTT-EEEEEESS CS Regulator_TrmB 36 eelreeliaaaergvtVllliyp 58 +e+ + li++a++gv+V+l+i + 23726_FusoPortal_Gene_1458 157 KEIADLLIEKAKEGVEVNLIIDG 179 578999***************98 PP == domain 2 score: 10.0 bits; conditional E-value: 9.8e-05 HHHHHHHHHHHHHH-SSEEEEEE-GGGHHH.HHHHHHHHHHTT-EEEEEESS----GGGSSSSEEEE CS Regulator_TrmB 8 retvierieelIesAenelivslpselLee.lreeliaaaergvtVllliypdedleeldleevate 73 + ++ ++ +lI++A++ + +++p+ + l + l++a+ +g+ V ++i +++d ++ + +++ + 23726_FusoPortal_Gene_1458 312 FPAIRDNYIKLIQEARKSVFIQTPYFVPDDlLLDTLKSAVLSGIDVKIMIPNKADHPFIYWVNQYYV 378 778999******************9776653689****************99888888877776655 PP >> DUF1669 Protein of unknown function (DUF1669) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -0.1 0.0 0.15 5.1e+02 131 181 .. 133 186 .. 109 199 .. 0.70 2 ? -1.2 0.0 0.32 1.1e+03 251 265 .. 254 268 .. 249 270 .. 0.85 3 ? 8.4 0.0 0.00041 1.4 119 189 .. 308 378 .. 297 444 .. 0.74 Alignments for each domain: == domain 1 score: -0.1 bits; conditional E-value: 0.15 DUF1669 131 rkliqkaqkviavvmdvftDvdi...fkdlleaaskrkvpvyilLdeknlklfl 181 +k i++a+k i + +f i + dll k +v+v +++d nl f 23726_FusoPortal_Gene_1458 133 KKEIANAKKFINMEYFIFQFDGIgkeIADLLIEKAKEGVEVNLIIDGVNLANFR 186 56666666666655555543333111344554556678********99999885 PP == domain 2 score: -1.2 bits; conditional E-value: 0.32 DUF1669 251 tvltGqivesFdeeF 265 +++ G+iv+sF++eF 23726_FusoPortal_Gene_1458 254 VKIYGDIVSSFEKEF 268 6789**********9 PP == domain 3 score: 8.4 bits; conditional E-value: 0.00041 DUF1669 119 pkekaphikevvrkliqkaqkviavvmdvftDvdifkdlleaaskrkvpvyilLdeknlklflemceklqv 189 p+ + p i++ kliq+a+k + + + f d++ d l+ a+ ++ v i++ +k + f+ ++++ v 23726_FusoPortal_Gene_1458 308 PNYEFPAIRDNYIKLIQEARKSVFIQTPYFVPDDLLLDTLKSAVLSGIDVKIMIPNKADHPFIYWVNQYYV 378 5566789999999*****************************************99999999888776554 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (480 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1028 (0.0615127); expected 334.2 (0.02) Passed bias filter: 402 (0.0240546); expected 334.2 (0.02) Passed Vit filter: 38 (0.00227382); expected 16.7 (0.001) Passed Fwd filter: 6 (0.000359023); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.35 # Mc/sec: 3986.79 // [ok]