# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1478.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1478 [L=182] Description: # 1579099 # 1579644 # -1 # ID=1_1478;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.251 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.8e-32 110.7 0.0 7.8e-32 110.5 0.0 1.0 1 5-FTHF_cyc-lig 5-formyltetrahydrofolate cyclo-ligase family ------ inclusion threshold ------ 0.055 13.6 0.2 0.076 13.1 0.2 1.2 1 DHquinase_I Type I 3-dehydroquinase Domain annotation for each model (and alignments): >> 5-FTHF_cyc-lig 5-formyltetrahydrofolate cyclo-ligase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 110.5 0.0 9.3e-36 7.8e-32 1 187 [] 4 176 .. 4 176 .. 0.92 Alignments for each domain: == domain 1 score: 110.5 bits; conditional E-value: 9.3e-36 HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHTSHHHHH-SEEEE----TTS---HHHHHHHHHTTEEEEEEEECSSCTEECE CS 5-FTHF_cyc-lig 1 KqelRkqllaalralseeevaaesealsqrieslkesqeakrvalyvsvkgeidtkelikklleegkevllPrvrlesgslkv 83 K+e+R+ +++++ +ls+e + s+++++++ + + +++ak+v+ y+ +k e++t+ + + + gk ++lP+v ++ 23726_FusoPortal_Gene_1478 4 KKEARTLIKERRMNLSKEYIDVASDKIFEKLLQNEDFKNAKTVMSYMDFKNEVKTDRINTFIKNSGKILVLPKVVDKE----- 81 899***********************************************************************9999..... PP EEEEECCCCCCCCCHCTSSCE--TTECCBCGGGG-SEEEE--SEEETTS-EE-SSTTHHHHHHHHHTST-SS--EEEEE--GG CS 5-FTHF_cyc-lig 84 vrlttlkeedslesgkyglkePeeeeerelalekldlvlvPgvAfdkeGaRlGkGkGyyDrflarlkggagdkpltvglalde 166 +++ +++++ + ++g keP ee + +d++++Pg+Afd++ +R+G+G+GyyDrf+ + + +++++a+++ 23726_FusoPortal_Gene_1478 82 TMIV-IEDKNQYIVSPFGNKEPDGEEYKG----SIDVIITPGIAFDRDKNRVGFGRGYYDRFFVKQPN-----AKKIAIAFEK 154 3333.34455555569******9998863....69****************************99888.....9********* PP GEES.-----ST----SEEE-S CS 5-FTHF_cyc-lig 167 qlve.rlPleehDvpvdevvte 187 q+++ ++++++D +vd+++te 23726_FusoPortal_Gene_1478 155 QIIDeGIETDKYDKKVDILITE 176 ****99**************97 PP >> DHquinase_I Type I 3-dehydroquinase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.2 9.2e-06 0.076 83 140 .. 13 66 .. 2 78 .. 0.77 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 9.2e-06 HHHHHCT-SEEEEEGG..HHGHHHHHHHHHHHTT-EEEEEEEESS----HHHHHHHHH CS DHquinase_I 83 rtaielgadyvDvElteapeeskkrlieekreggtkvIvSyhdfegtpsaeelkalle 140 ++ ++l +y+Dv + ++l ++ ++ k ++Sy df++ + + + ++ 23726_FusoPortal_Gene_1478 13 ERRMNLSKEYIDVASDK----IFEKLLQNEDFKNAKTVMSYMDFKNEVKTDRINTFIK 66 445667779****9943....3468999999****************99998887766 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (182 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 736 (0.0440402); expected 334.2 (0.02) Passed bias filter: 357 (0.0213619); expected 334.2 (0.02) Passed Vit filter: 33 (0.00197463); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.26u 0.25s 00:00:00.51 Elapsed: 00:00:00.34 # Mc/sec: 1556.12 // [ok]