# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1481.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1481 [L=239] Description: # 1581020 # 1581736 # -1 # ID=1_1481;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.247 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-41 141.3 0.1 3.1e-41 140.9 0.1 1.1 1 adh_short short chain dehydrogenase 2.2e-24 86.2 0.0 2.8e-24 85.9 0.0 1.1 1 adh_short_C2 Enoyl-(Acyl carrier protein) reductase 6.2e-08 32.7 0.0 9.6e-08 32.0 0.0 1.3 1 KR KR domain 3.3e-06 26.6 0.0 7.2e-06 25.5 0.0 1.5 1 Epimerase NAD dependent epimerase/dehydratase family 0.0002 20.7 0.2 0.0003 20.1 0.2 1.2 1 DUF1776 Fungal family of unknown function (DUF1776) 0.0043 16.1 0.0 0.0061 15.6 0.0 1.3 1 RmlD_sub_bind RmlD substrate binding domain ------ inclusion threshold ------ 0.033 13.4 0.2 0.075 12.3 0.1 1.7 2 GDP_Man_Dehyd GDP-mannose 4,6 dehydratase 0.12 12.2 0.0 0.18 11.6 0.0 1.5 1 NAD_binding_10 NAD(P)H-binding Domain annotation for each model (and alignments): >> adh_short short chain dehydrogenase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 140.9 0.1 1.5e-44 3.1e-41 1 188 [. 2 183 .. 2 188 .. 0.92 Alignments for each domain: == domain 1 score: 140.9 bits; conditional E-value: 1.5e-44 SEEEEETTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE CS adh_short 1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvn 83 k++lvtGa+sGIG++i+k+l+k++++v+ ++r+ k +e + e e ++++++++D+++ +++e+++ +k k +++vn 23726_FusoPortal_Gene_1481 2 KIALVTGATSGIGYEISKRLLKMNYTVYGIGRNFIKNNENIFE---EYENFIPVTCDLSKLDDLEKTLHSLKK--IKFNLIVN 79 79******************************97665443333...3345********************965..5899**** PP ---SS--SSGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTCEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHH CS adh_short 84 NAGitgsgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslake 166 AGi +g +e++ ++++++i+vNl++++ +++ +l++ lk+++G I+n+sSv+++++++ ++YsA+Ka++ ++++sl +e 23726_FusoPortal_Gene_1481 80 SAGIGYFGLHEEMNISKIKNMIAVNLQAPLVISQYFLKT-LKENKGMIINISSVTANKESPLASVYSATKAGLSQFSKSLFEE 161 ***************************************.669**************************************** PP HGGCTEEEEEEEE-SBSSHHHH CS adh_short 167 laptgirvnavaPGlvdTdmak 188 +++ ++v++v+P +++T++ 23726_FusoPortal_Gene_1481 162 VRKNDVKVITVYPDMTKTNFYD 183 ******************9765 PP >> adh_short_C2 Enoyl-(Acyl carrier protein) reductase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 85.9 0.0 1.4e-27 2.8e-24 1 213 [. 8 209 .. 8 223 .. 0.87 Alignments for each domain: == domain 1 score: 85.9 bits; conditional E-value: 1.4e-27 TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG CS adh_short_C2 1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapk 82 Ga sgIG++i k+l + ++v +n + + e++ ee+++ + ++cD ++ +++e++ ++++ k++ +vn+agi 23726_FusoPortal_Gene_1481 8 GATSGIGYEISKRLLKMNYTVYGIGRNFIK--NNENIFEEYENFIpVTCDLSKLDDLEKTLHSLKKI--KFNLIVNSAGIGYF 86 999******************999888886..789999*9999989******************997..9************* PP CSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTE CS adh_short_C2 83 lkgpfletsreefdkaldvnlyslfllakaalplmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgi 164 g +e++ ++++++++vnl++ + +++++l+ +ke+ g i+n+ssv a++ p ++y+a+Ka+l +++++l e+ ++ + 23726_FusoPortal_Gene_1481 87 --GLHEEMNISKIKNMIAVNLQAPLVISQYFLKTLKENkGMIINISSVTANKESPLASVYSATKAGLSQFSKSLFEEVRKNDV 167 ..9999***************************877777******************************************** PP EEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHH CS adh_short_C2 165 RvNavspgpikTlaasgikgfeelleelearaplgrlgtpeevaeaalf 213 +v +v p ++kT+ ++ + f + +++a +++e++++++ f 23726_FusoPortal_Gene_1481 168 KVITVYPDMTKTNFYDNNTYF---ECDDDEKAY----IKMEDIGNTIEF 209 ************987665533...223333332....333555555555 PP >> KR KR domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.0 0.0 4.6e-11 9.6e-08 4 161 .. 5 156 .. 3 175 .. 0.86 Alignments for each domain: == domain 1 score: 32.0 bits; conditional E-value: 4.6e-11 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEE CS KR 4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvi 86 l+tG++ g+G e+++ l++ + ++ ++R+ +++++ ++e e + v +D+s+ d++e++l+++k+ + + ++ 23726_FusoPortal_Gene_1481 5 LVTGATSGIGYEISKRLLKM-NYTVYGIGRNFI--KNNENIFEEYE----NFIPVTCDLSKLDDLEKTLHSLKKIK--FNLIV 78 9****************986.678999****44..44444455554....578899****************9555..788** PP E---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHH CS KR 87 haAgvlrdklleemtaedleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaaNaflDalae 161 ++Ag+ +l eem+ +++++++a +++ ++ +++ + e+ +++ +SS+ + s+ + Y+a+ a l ++ + 23726_FusoPortal_Gene_1481 79 NSAGIGYFGLHEEMNISKIKNMIAVNLQAPLVISQYFLKtlkENKGMIINISSVTANKESPLASVYSATKAGLSQFSK 156 ************************************99988789999*********************9876666654 PP >> Epimerase NAD dependent epimerase/dehydratase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.5 0.0 3.4e-09 7.2e-06 1 115 [. 4 131 .. 4 150 .. 0.77 Alignments for each domain: == domain 1 score: 25.5 bits; conditional E-value: 3.4e-09 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHHHH...T-SEEEE--S--.. CS Epimerase 1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl...elveldltdrsalerlfkee...qpdavihlAavg.. 75 +lVtGat iG + k+ll+ +y+v g+ r+ ++n++ e+ v++dl + ++le+ +++ +++ +++ A++g 23726_FusoPortal_Gene_1481 4 ALVTGATSGIGYEISKRLLKMNYTVYGIGRNFIKNNENIFEEYenfIPVTCDLSKLDDLEKTLHSLkkiKFNLIVNSAGIGyf 86 59*****************************777776666666988889999999999998876543238999****998833 PP ..-HHHHHHSHHHHHHHHTHHHHHHHHHHHHH...TCTEEEEEEE CS Epimerase 76 ..gvaassedpadfieknlqgtlnlleaarka...gvkrllflsS 115 + + ++++ + +i nlq l + ++ k+ + ++++sS 23726_FusoPortal_Gene_1481 87 glHEEMNISKIKNMIAVNLQAPLVISQYFLKTlkeNKGMIINISS 131 333455777888888888888888888877653334446666666 PP >> DUF1776 Fungal family of unknown function (DUF1776) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.1 0.2 1.4e-07 0.0003 107 195 .. 87 172 .. 80 173 .. 0.92 Alignments for each domain: == domain 1 score: 20.1 bits; conditional E-value: 1.4e-07 DUF1776 107 gpietiplsswaselnerlleylltlqallplltsraqkskiivlnpsissslnlpyhapEalvssalsalfeiLkrelrphn 189 g e++ +s++++ + +l ++l+++q +l+ l++ + +i+ s++++ + p +++ + + ls++ ++L +e+r+ + 23726_FusoPortal_Gene_1481 87 GLHEEMNISKIKNMIAVNLQAPLVISQYFLKTLKE---NKGMIINISSVTANKESPLASVYSATKAGLSQFSKSLFEEVRKND 166 5568999***************************7...777777888*********************************999 PP DUF1776 190 idvtqi 195 ++v+++ 23726_FusoPortal_Gene_1481 167 VKVITV 172 999875 PP >> RmlD_sub_bind RmlD substrate binding domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.0 2.9e-06 0.0061 3 60 .. 4 82 .. 1 131 [. 0.82 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 2.9e-06 EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT..................T--TTSHHHHHHHH...HHH--SEEEE--- CS RmlD_sub_bind 3 ilvtGanGqlGseLakqlaeeglevlaltre..................eldltdaeavaell...keakpdvvvnaAA 60 lvtGa+ +G+e+ k+l + ++ v++++r+ ++dl++ + ++++l k++k +++vn A 23726_FusoPortal_Gene_1481 4 ALVTGATSGIGYEISKRLLKMNYTVYGIGRNfiknnenifeeyenfipvTCDLSKLDDLEKTLhslKKIKFNLIVNSAG 82 48***********************************************88888777777766333788999****996 PP >> GDP_Man_Dehyd GDP-mannose 4,6 dehydratase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.3 0.1 3.6e-05 0.075 1 81 [. 5 79 .. 5 101 .. 0.76 2 ? -2.4 0.0 1.1 2.2e+03 179 188 .. 132 141 .. 110 162 .. 0.55 Alignments for each domain: == domain 1 score: 12.3 bits; conditional E-value: 3.6e-05 EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHH...HHHT-SEEEE CS GDP_Man_Dehyd 1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlykdpeaeleenlklvkgDltDssslerll...aevqpdevyn 81 L+TG + iG + ++Ll+ +y+v+gi r+ + e++ ++ en+ v++Dl+ + le+ l ++++++ ++n 23726_FusoPortal_Gene_1481 5 LVTGATSGIGYEISKRLLKMNYTVYGIGRNFIKN----NENIFEE-----YENFIPVTCDLSKLDDLEKTLhslKKIKFNLIVN 79 9*************************98876553....3555532.....2477888888877777766651115667777776 PP == domain 2 score: -2.4 bits; conditional E-value: 1.1 EE-EEESTTS CS GDP_Man_Dehyd 179 ilfNhesprr 188 ++ N+esp 23726_FusoPortal_Gene_1481 132 VTANKESPLA 141 4445555543 PP >> NAD_binding_10 NAD(P)H-binding # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.0 8.4e-05 0.18 1 68 [. 8 76 .. 8 212 .. 0.74 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 8.4e-05 TTTSHHHHHHHHHHHHC.T-EEEEEETT..HHHCHHHHCTTTCEEEE--TT.CCHHHHHHTT-SEEEES- CS NAD_binding_10 1 GAtGkvGrllvkellargghevtalvRn..peklaeleaeeglevvegdvtdvedlaealkgadaVvsal 68 GAt ++G ++ k+ll+ +++v + Rn ++ + +e+ e+ v+ d+++ +dl+++l + ++l 23726_FusoPortal_Gene_1481 8 GATSGIGYEISKRLLKM-NYTVYGIGRNfiKNNENIFEEYENFIPVTCDLSKLDDLEKTLHSLKKIKFNL 76 9****************.6********96544444467779*****************999777666666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (239 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 843 (0.0504428); expected 334.2 (0.02) Passed bias filter: 343 (0.0205242); expected 334.2 (0.02) Passed Vit filter: 33 (0.00197463); expected 16.7 (0.001) Passed Fwd filter: 8 (0.000478698); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 8 [number of targets reported over threshold] # CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.37 # Mc/sec: 1877.79 // [ok]