# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1490.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1490 [L=280] Description: # 1587491 # 1588330 # 1 # ID=1_1490;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.276 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-05 23.6 0.0 5.3e-05 22.8 0.0 1.5 1 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family Domain annotation for each model (and alignments): >> Exo_endo_phos Endonuclease/Exonuclease/phosphatase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.8 0.0 3.2e-09 5.3e-05 1 212 [] 30 265 .. 30 265 .. 0.58 Alignments for each domain: == domain 1 score: 22.8 bits; conditional E-value: 3.2e-09 EEEEEST....SHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH.......................SCEE CS xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxx RF Exo_endo_phos 1 ltwNvng....kspaagsprrsarladllraydaDvlgLQEvddddlsrlplllal.......................gdgd 56 +++N+++ k + ++ + a++l+ + D++gL Ev ++d+ + l ++ + 23726_FusoPortal_Gene_1490 30 ASFNILRlgaaK----K---DMPQTAKILQGF--DIVGLVEVINRDGVEE--LVDElnkasdekwdyhispfgvgsskyK--- 98 6999***64432....3...366777777777..*******887775443..3333456677666555555555544431... PP SEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEE............CHHGHHHHHHHHHHHHHHHHHHHHHTTSE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF Exo_endo_phos 57 ggvavlsrfpltslfrrtfiefndlsaatrreplaakleqln............hrdhdlvrdlqllalllqvealnadrdap 127 +a++++ ++ +n +s +r a+ ++ + + + + ++ + ++++++ 23726_FusoPortal_Gene_1490 99 EYFAYVYKKDKVKFIKSEGFYKNGKSSLLREPYGATFQIENFdftfvlvhtiygNNESQRKAENFKMVDVYDYFQDRDKKEND 181 22377777777666666666666666666666666666666677888888886666666666667777788888888999999 PP EEEEEE-SSSTSGGGBSCGHHHHHHCTTTSSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEEC...TSS CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx RF Exo_endo_phos 128 vivaGDfNarpsdddsrvlrtrglalapaglyllgggptptyvtraggsrlDrilaspalatfrsgvlppplalvrr...eal 207 +++aGDfN d ++ l ++ y +t t++ D +++s + + +g+ + + ++ + + 23726_FusoPortal_Gene_1490 182 IFIAGDFNLYALDESFKPLYKHSDKI----TYAIDPAIKTTIGTKGRANSYDNFFFSQKYSQEFTGSSGALDFSGDNpkqMRE 260 *********55555555544444444....24444444444444444444466666654333333333333333333555666 PP CSSSB CS xxxxx RF Exo_endo_phos 208 tlSDH 212 +SDH 23726_FusoPortal_Gene_1490 261 IISDH 265 66666 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (280 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 506 (0.0302776); expected 334.2 (0.02) Passed bias filter: 329 (0.0196865); expected 334.2 (0.02) Passed Vit filter: 28 (0.00167544); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.25u 0.23s 00:00:00.48 Elapsed: 00:00:00.31 # Mc/sec: 2625.71 // [ok]