# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1514.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1514 [L=50] Description: # 1614780 # 1614929 # 1 # ID=1_1514;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.200 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- ------ inclusion threshold ------ 0.023 14.2 0.5 0.026 14.1 0.5 1.1 1 DUF3231 Protein of unknown function (DUF3231) Domain annotation for each model (and alignments): >> DUF3231 Protein of unknown function (DUF3231) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.5 1.5e-06 0.026 41 70 .. 17 46 .. 6 47 .. 0.91 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 1.5e-06 DUF3231 41 vaedkeikelleralelsnkhikelkelLk 70 +a+d ei + l+ + +lsn+++kel++l+ 23726_FusoPortal_Gene_1514 17 TAKDSEILKKLKSGYDLSNEEKKELEDLID 46 79************************9975 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (50 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1170 (0.0700096); expected 334.2 (0.02) Passed bias filter: 611 (0.0365606); expected 334.2 (0.02) Passed Vit filter: 53 (0.00317137); expected 16.7 (0.001) Passed Fwd filter: 1 (5.98372e-05); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.27u 0.28s 00:00:00.55 Elapsed: 00:00:00.40 # Mc/sec: 363.38 // [ok]