# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1550.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1550 [L=672] Description: # 1652441 # 1654456 # -1 # ID=1_1550;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.230 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.4e-37 130.0 9.0 1.4e-37 130.0 9.0 3.7 3 DUF262 Protein of unknown function DUF262 1.3e-25 89.8 11.8 1.3e-25 89.8 11.8 2.9 4 DUF1524 Protein of unknown function (DUF1524) 2.1e-19 69.1 0.2 6.3e-19 67.6 0.2 1.9 1 DUF4357 Domain of unknown function (DUF4357) 0.0034 17.2 0.0 0.014 15.2 0.0 2.0 1 HNH_4 HNH endonuclease ------ inclusion threshold ------ 0.061 13.1 0.3 2.7 7.8 0.1 2.4 2 YajC Preprotein translocase subunit 0.25 11.3 2.3 0.3 11.1 0.1 2.2 2 Lipocalin_3 Lipocalin-like Domain annotation for each model (and alignments): >> DUF262 Protein of unknown function DUF262 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 130.0 9.0 4.9e-41 1.4e-37 1 220 [. 8 222 .. 8 223 .. 0.82 2 ? -0.1 8.0 0.3 8.4e+02 112 172 .. 275 355 .. 228 386 .. 0.50 3 ? -8.3 16.3 6 1.7e+04 82 172 .. 396 504 .. 376 637 .. 0.71 Alignments for each domain: == domain 1 score: 130.0 bits; conditional E-value: 4.9e-41 DUF262 1 ledllskskrglriPdfQRpyvWeeeqveeLiedlla......lkgyplGsivlw..skaads..ageleviDGQQRltTltl 73 ++dl+s+ k+ + iP +QR+y W+e+++++L+ed+l+ ++++Gsiv + + ++e++viDGQQR T+tl 23726_FusoPortal_Gene_1550 8 IKDLFSEAKTFFAIPVYQRDYNWQEKHCKQLFEDILNvgkdidITSHFIGSIVYIheGVY--GigEKEFYVIDGQQRMITITL 88 799*****9988******************************99**********844334..356****************** PP DUF262 74 llaa..t.keesekriknleaeiek.ekeeededrlkrreresdkellqkllrseklsleekeelaelnsltkkdlakeekrn 152 l+ a + ++es+++ ++ ++e+ +k++++ ++lk+ ++e++ + l+k+l+++ ++l +++ 23726_FusoPortal_Gene_1550 89 LHIAlyHrLKESKEEYADEIYELYLvNKFSKRDIKLKLLPPEENLNILNKILEENWEEL---------------------EDY 150 ****4314444444444444444447889999999999999999999999999887654.....................389 PP DUF262 153 eeknlikayevieeilksa.......llsalktklslieieleseddedqayeiFerlNsrGvpLtasellkall 220 +++n+ k+y++++ei++++ ll ++i + + e+d+d+ ++iFe+lNs+G+ L++ +l+++++ 23726_FusoPortal_Gene_1550 151 QDRNIVKNYKFFKEIISNYsneeieyLLA---GLDKIIYVDIALEKDKDDPQKIFESLNSTGLDLSQGDLIRNYI 222 *******************8886554222...33555555555559999************************97 PP == domain 2 score: -0.1 bits; conditional E-value: 0.3 DUF262 112 sdkellqkllrseklslee.keelaelnsltkkdl..akeekrneeknlikayevieeilksa..................l 172 s+ + ++++ + ++ ++ e +e +++++ + + + +++ek++e ++ +++++v+++ + + 23726_FusoPortal_Gene_1550 275 SKPKVFEEFKEFYNKNNDEqLEDIKNFSEEYSH-IikPNTEKDKEIRKELENLKVLDQTVINTfligilrdyrenkivkneI 355 223333333333333333312222233333333.357999999999999999999998777777666666555555544442 PP == domain 3 score: -8.3 bits; conditional E-value: 6 DUF262 82 sekriknleaeiekekeeededrlkrreresdkellqkllrseklsleekeelaelnsltkkdl.....akeekrneeknlik 159 ++k++++ + + + + ++e ++ lk + ++dke+l++ +++ ++++ ++ ++e + t + + +k k+++ ++ ++ 23726_FusoPortal_Gene_1550 396 YYKSLEESLLNQDFPTDDELKEALKTKNVYKDKEKLRYVFKELENYNHNELIDFENEKITIEHIfpqkpNKSWKEKYSDYELE 478 33333333333333555555555555555666666666666666555555555555555555556666677777777777777 PP DUF262 160 ayevieeilksa.............l 172 +++++ +++ + 23726_FusoPortal_Gene_1550 479 EMKTFKDTISNLtltgsnanlgnksF 504 77777777766666666666655551 PP >> DUF1524 Protein of unknown function (DUF1524) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.5 0.2 1.4 4e+03 6 29 .. 139 162 .. 134 179 .. 0.55 2 ? -2.2 0.2 1.1 3.1e+03 51 55 .. 305 309 .. 259 337 .. 0.52 3 ! 89.8 11.8 4.5e-29 1.3e-25 1 138 [. 409 546 .. 409 547 .. 0.92 4 ? -3.3 0.1 2.5 7e+03 3 32 .. 608 634 .. 602 645 .. 0.66 Alignments for each domain: == domain 1 score: -2.5 bits; conditional E-value: 1.4 DUF1524 6 efrrallnaklysssrkklryila 29 +++++++ ++y+ ++ + y ++ 23726_FusoPortal_Gene_1550 139 ILEENWEELEDYQDRNIVKNYKFF 162 455555555555555544444444 PP == domain 2 score: -2.2 bits; conditional E-value: 1.1 DUF1524 51 iEHil 55 + Hi 23726_FusoPortal_Gene_1550 305 YSHII 309 44443 PP == domain 3 score: 89.8 bits; conditional E-value: 4.5e-29 DUF1524 1 fprdeefrrallnaklysssrkklryilakelesalreedeeegeakkltiEHilPqslaekw.egagqedeekreelvndlg 82 fp+d+e+++al+++++y+ + klry++ ele++ ++ ++ e++k+tiEHi+Pq+++++w e+ ++ + e+ + +++++ 23726_FusoPortal_Gene_1550 409 FPTDDELKEALKTKNVYKDKE-KLRYVFK-ELENYNH-NELIDFENEKITIEHIFPQKPNKSWkEKYSDYELEEMKTFKDTIS 488 699***************997.99*****.***7777.555555556788***********99777778889999******** PP DUF1524 83 NLtlltkslNsslsnkpfleKrd....lykksslrlnrklaekdewdeeaiearqeaLak 138 NLtl+ N+ l nk+fleKr+ +yk+s+l+ln++l++ +ew+ a e r e+L+k 23726_FusoPortal_Gene_1550 489 NLTLTG--SNANLGNKSFLEKRNddihGYKNSKLYLNKYLSKLNEWNLSAMEGRFEELFK 546 ******..**************************************************98 PP == domain 4 score: -3.3 bits; conditional E-value: 2.5 DUF1524 3 rdeefrrallnaklysssrkklryilakel 32 r++++ ++ll+++l +++ +k yil e+ 23726_FusoPortal_Gene_1550 608 RNKRIIEELLENNLVEKDGNK--YILK-EN 634 566666666666666666655..7776.44 PP >> DUF4357 Domain of unknown function (DUF4357) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 67.6 0.2 2.3e-22 6.3e-19 2 53 .. 614 665 .. 614 666 .. 0.95 Alignments for each domain: == domain 1 score: 67.6 bits; conditional E-value: 2.3e-22 DUF4357 2 ekliedgvlvkeggrlvfteDyeFsSPSaAAsvvlGrsaNGwteWkdedGkt 53 e+l+e++ ++k+g++++++e+y++sSPSaAAs++lGr+aNGw+eWk+ dGk 23726_FusoPortal_Gene_1550 614 EELLENNLVEKDGNKYILKENYKVSSPSAAASLILGRNANGWKEWKTFDGKL 665 689999999999**************************************95 PP >> HNH_4 HNH endonuclease # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.2 0.0 4.9e-06 0.014 8 49 .. 441 502 .. 438 509 .. 0.88 Alignments for each domain: == domain 1 score: 15.2 bits; conditional E-value: 4.9e-06 --GGGGGG.....SEEEESS-TTT---.................-SGGGEEEES-GGGGS.T CS HNH_4 8 Isiedlsd..tkeydiDHilPrsrskd.................DsvsNkVLvlrdaNqe.K 49 ++ ++l+d ++++ i+Hi+P+ k D++sN++L+ ++aN + K 23726_FusoPortal_Gene_1550 441 YNHNELIDfeNEKITIEHIFPQKPNKSwkekysdyeleemktfkDTISNLTLTGSNANLGnK 502 56677777767899*********999999*****************************8755 PP >> YajC Preprotein translocase subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 2.7 0.0 0.039 1.1e+02 23 56 .. 30 64 .. 17 86 .. 0.78 2 ? 7.8 0.1 0.00098 2.7 14 59 .. 305 351 .. 304 366 .. 0.86 Alignments for each domain: == domain 1 score: 2.7 bits; conditional E-value: 0.039 YajC 23 kkqkehkemles.LkkGdeVvtigGivGkvvkvde 56 ++k k++ e L++G+ + +++ ++G +v ++e 23726_FusoPortal_Gene_1550 30 WQEKHCKQLFEDiLNVGKDIDITSHFIGSIVYIHE 64 56677777766669*****************9986 PP == domain 2 score: 7.8 bits; conditional E-value: 0.00098 YajC 14 yfllirpqqkkqkehkemlesLkkGdeVvtigGivGkvvkvdede.v 59 y +i+p+ k ke ++ le+Lk+ d+ v++ ++G +++e++ v 23726_FusoPortal_Gene_1550 305 YSHIIKPNTEKDKEIRKELENLKVLDQTVINTFLIGILRDYRENKiV 351 6679***************************9999999999977523 PP >> Lipocalin_3 Lipocalin-like # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.7 0.2 1 2.9e+03 42 91 .. 466 515 .. 464 518 .. 0.72 2 ? 11.1 0.1 0.00011 0.3 4 82 .. 547 623 .. 545 636 .. 0.80 Alignments for each domain: == domain 1 score: -1.7 bits; conditional E-value: 1 EEEEEETTEEEEEEEEEETTEEEEEEEEEEEEEE-SSEEEEEETTEEEEE CS Lipocalin_3 42 ekWklegdkLiLegksigngqtieftdTleiekltkdsltlkkgeytieY 91 ++Wk + + Le ++ +++ ++ t T + ++l ++s k++++ Y 23726_FusoPortal_Gene_1550 466 KSWKEKYSDYELEEMKTFKDTISNLTLTGSNANLGNKSFLEKRNDDIHGY 515 68888888888888888888888888888888777776655555555555 PP == domain 2 score: 11.1 bits; conditional E-value: 0.00011 -S-EEEEEEETTEEEEEEEEEE-TTSBEEEES-SSEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEEEE-SSEEEE CS Lipocalin_3 4 kllGkWvepvpgnkeevqGfeLkedGkasSinmatLkyekWklegdkLiLegksigngqtieftdTleiekltkdsltl 82 +++ W +p + ++++++ +++ +G asS + L yek ++ ++++i++g++ gn++ +e+ + ie+l +++l+ 23726_FusoPortal_Gene_1550 547 NIVKVWKRPENSEDKDIEKVTFVLKGAASSGTGKLLAYEKFEILKGSIIVKGNK-GNEN-VEKRNKRIIEELLENNLVE 623 56778**********************************************986.5544.4555555566666666655 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (672 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 1527 (0.0913715); expected 334.2 (0.02) Passed bias filter: 458 (0.0274055); expected 334.2 (0.02) Passed Vit filter: 41 (0.00245333); expected 16.7 (0.001) Passed Fwd filter: 7 (0.000418861); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.33 # Mc/sec: 5919.77 // [ok]