# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1587.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1587 [L=219] Description: # 1702144 # 1702800 # 1 # ID=1_1587;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.259 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.1e-55 187.3 22.1 3.7e-55 187.0 22.1 1.1 1 DsbD Cytochrome C biogenesis protein transmembrane r 3.5e-14 53.1 13.5 4.7e-14 52.7 13.5 1.2 1 DsbD_2 Cytochrome C biogenesis protein transmembrane r 0.00018 20.9 4.8 0.00043 19.7 4.8 1.7 1 SfLAP Sap, sulfolipid-1-addressing protein 0.00045 20.1 0.1 0.002 18.0 0.1 2.1 1 DUF2182 Predicted metal-binding integral membrane prote ------ inclusion threshold ------ 0.067 13.0 0.4 3.4 7.6 0.0 2.4 2 Orthoreo_P10 Orthoreovirus membrane fusion protein p10 3.5 7.5 9.1 6.8 6.6 1.4 2.6 2 RseC_MucC Positive regulator of sigma(E), RseC/MucC Domain annotation for each model (and alignments): >> DsbD Cytochrome C biogenesis protein transmembrane region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 187.0 22.1 1.3e-58 3.7e-55 1 212 [. 11 208 .. 11 209 .. 0.94 Alignments for each domain: == domain 1 score: 187.0 bits; conditional E-value: 1.3e-58 DsbD 1 aflaGllsflsPCilpliPaylsyisgvsvedvktekkkvkvllkallFvlGlslvfvslglsaaflgqllkdvkevirrvag 83 a+laG++sf+sPCi+p+iP+y+s++s+ e k+l k++ FvlGls++++ lg++a+ +g+l+ +++ +r+++g 23726_FusoPortal_Gene_1587 11 AYLAGVASFFSPCIFPIIPVYISILSN-------GE---KKSLSKTFAFVLGLSVTYIVLGFGAGVIGDLF--LNNNVRIIGG 81 589***********************2.......22...24689***************************..99******** PP DsbD 84 livillGlhflgvfkievleklklllkikkkaelsvlgalllGltFalgwsPCigPvlasvlalaaskeslakgallllvyvl 166 +iv++lGl +++++k+++lek+k + +++ s++ ++llGltF+lgw+PC+gP+las+l+la+s+++++++++l+++y l 23726_FusoPortal_Gene_1587 82 IIVVILGLFQMEILKLKFLEKTKIMNYEGENQ--SIFSTFLLGLTFSLGWTPCVGPILASILILASSSGDTTNSVMLMFIYLL 162 ************************96533333..46*********************************************** PP DsbD 167 GlaipfllvglllellkkklkslkkyskaveiaggvllvllGvlll 212 G+a+pf++++l ++ l kk+ +kky +++++gg l++++G+ll+ 23726_FusoPortal_Gene_1587 163 GMATPFVIFSLASKALFKKMSFIKKYLPTIKKVGGFLIIIMGLLLI 208 ********************************************98 PP >> DsbD_2 Cytochrome C biogenesis protein transmembrane region # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 52.7 13.5 1.7e-17 4.7e-14 2 198 .. 11 205 .. 10 206 .. 0.83 Alignments for each domain: == domain 1 score: 52.7 bits; conditional E-value: 1.7e-17 DsbD_2 2 afllgLlgsl.hClgmCggivlalslskpkral.alllynlGRilsYallGalvgllgsvlqlageleglrallgvllgllll 82 a l+g ++ + +C+ ++ +++ ++ +k++l +++++ lG ++Y++lG +g++g ++ ++ +r++ g+++++l+l 23726_FusoPortal_Gene_1587 11 AYLAGVASFFsPCIFPIIPVYISILSNGEKKSLsKTFAFVLGLSVTYIVLGFGAGVIGDLFLNNN----VRIIGGIIVVILGL 89 77899999999************999998888758**************************5554....89999999999999 PP DsbD_2 83 llglklllkkkllklerlgkllsrllkklakklkslasalllGlln..GllpC..glvysalllalasgsaleGalvmlaFgL 161 + +++ lkl++l+k + +++ + +s +s +llGl + G+ pC +++ s+l+la +sg+ ++++++m+++ L 23726_FusoPortal_Gene_1587 90 F-QMEI------LKLKFLEK--TKIMNYEG-ENQSIFSTFLLGLTFslGWTPCvgPILASILILASSSGDTTNSVMLMFIYLL 162 8.4444......56777775..23333333.3479999*****8643399***9778999*********************** PP DsbD_2 162 GTlpalllfglllgllskklr......kkllrlagvllillgl 198 G ++++f+l+++ l kk++ ++ ++ g+l+i++gl 23726_FusoPortal_Gene_1587 163 GMATPFVIFSLASKALFKKMSfikkylPTIKKVGGFLIIIMGL 205 ***************97766555555588899********998 PP >> SfLAP Sap, sulfolipid-1-addressing protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.7 4.8 1.5e-07 0.00043 20 170 .. 33 174 .. 12 183 .. 0.86 Alignments for each domain: == domain 1 score: 19.7 bits; conditional E-value: 1.5e-07 SfLAP 20 lllsr..prpvlnllaFlvgwlvvlvalglivlfvlrsllsgasaapssaikalqivlGvlllllaaveavrrpkassrselp 100 +ls ++ +++ +aF++g v++++lg+ + ++++ +l + ++i+ G+++++l+++++ k + ++++ 23726_FusoPortal_Gene_1587 33 SILSNgeKKSLSKTFAFVLGLSVTYIVLGFGAGVIGDLFL----------NNNVRIIGGIIVVILGLFQMEIL-KLKFLEKTK 104 5555555778888999999999999999988888888888..........356****************9999.888888888 PP SfLAP 101 rllsrleslleggalwvAlvlgllsakplllylaalaaigasgasvgtqvvalvvFvvvalavveiplla 170 + e+ ++ ++++l + l+ + + + la+++++++s ++ +v++++++ + +++++ i la 23726_FusoPortal_Gene_1587 105 IMNYEGENQSIFSTFLLGLTFSLGWTPCVGPILASILILASSSGDTTNSVMLMFIYLLGMATPFVIFSLA 174 8888999********************************************************9997665 PP >> DUF2182 Predicted metal-binding integral membrane protein (DUF2182) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.1 7.1e-07 0.002 7 130 .. 15 127 .. 10 207 .. 0.77 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 7.1e-07 DUF2182 7 mmvAmMlPsaaPlillyarlarrr.gkaaaalvlfvagYllvWlafglvatllqlllealallspllasassllaglvlllag 88 ++ P + P+i +y +++++ +k+ +++++fv+g ++ +++g+ a ++ l+ + ++ ++++g+++++ g 23726_FusoPortal_Gene_1587 15 GVASFFSPCIFPIIPVYISILSNGeKKSLSKTFAFVLGLSVTYIVLGFGAGVIGDLFLN---------NNVRIIGGIIVVILG 88 566777899******9988888883444559999*999999999999988877666655.........5679*********** PP DUF2182 89 lyqfsplkeaclkkCrsplgflaehwregaagalrlGlrhGl 130 l+q+ lk + l+k + +++ e +++ +++ lGl +l 23726_FusoPortal_Gene_1587 89 LFQMEILKLKFLEKTKI-MNY--EGENQSIFSTFLLGLTFSL 127 **********9998653.332..2333445556666655554 PP >> Orthoreo_P10 Orthoreovirus membrane fusion protein p10 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 3.2 0.1 0.029 80 48 69 .. 79 98 .. 73 123 .. 0.66 2 ? 7.6 0.0 0.0012 3.4 35 61 .. 182 208 .. 174 213 .. 0.82 Alignments for each domain: == domain 1 score: 3.2 bits; conditional E-value: 0.029 Orthoreo_P10 48 gggliviilllallycckakvk 69 gg+iv+il +l+ +k+k 23726_FusoPortal_Gene_1587 79 IGGIIVVIL--GLFQMEILKLK 98 577777665..55555444444 PP == domain 2 score: 7.6 bits; conditional E-value: 0.0012 Orthoreo_P10 35 tssliaywpylaagggliviilllall 61 s + y p + + gg+++ii+ l l+ 23726_FusoPortal_Gene_1587 182 MSFIKKYLPTIKKVGGFLIIIMGLLLI 208 577889************999876665 PP >> RseC_MucC Positive regulator of sigma(E), RseC/MucC # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 6.6 1.4 0.0024 6.8 66 122 .. 46 103 .. 34 107 .. 0.66 2 ? 5.1 0.8 0.007 20 76 124 .. 133 184 .. 117 190 .. 0.77 Alignments for each domain: == domain 1 score: 6.6 bits; conditional E-value: 0.0024 RseC_MucC 66 aallvYllPllllilgallgsall...gssellaalgallglvlgflivrllskrlkkks 122 + ++v +l + ++lg +g + ++ + ++g++++++lg++ +++l+ ++ +k 23726_FusoPortal_Gene_1587 46 TFAFVLGLSVTYIVLGFGAGV--IgdlFLNNNVRIIGGIIVVILGLFQMEILKLKFLEKT 103 444444444444443333332..223579******************9999988876665 PP == domain 2 score: 5.1 bits; conditional E-value: 0.007 RseC_MucC 76 lllilgallgsall...gssellaalgallglvlgflivrllskrlkkkskf 124 ++ il+ +l+ a + ++++++ +++ llg++ f+i l sk l kk +f 23726_FusoPortal_Gene_1587 133 VGPILASILILASSsgdTTNSVMLMFIYLLGMATPFVIFSLASKALFKKMSF 184 5444444444444446789999********************9999888776 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (219 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 705 (0.0421853); expected 334.2 (0.02) Passed bias filter: 239 (0.0143011); expected 334.2 (0.02) Passed Vit filter: 28 (0.00167544); expected 16.7 (0.001) Passed Fwd filter: 9 (0.000538535); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 6 [number of targets reported over threshold] # CPU time: 0.26u 0.24s 00:00:00.50 Elapsed: 00:00:00.32 # Mc/sec: 1989.50 // [ok]