# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1590.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1590 [L=243] Description: # 1705320 # 1706048 # 1 # ID=1_1590;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.272 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-40 139.0 0.0 1.8e-40 138.5 0.0 1.2 1 ABC_tran ABC transporter 1.7e-13 51.0 0.1 5.1e-08 33.0 0.0 2.2 2 AAA_21 AAA domain, putative AbiEii toxin, Type IV TA 1.1e-09 37.9 2.1 6.4e-09 35.5 2.1 1.9 1 SMC_N RecF/RecN/SMC N terminal domain 6.5e-09 35.8 1.4 3e-05 23.7 1.5 2.2 2 AAA_15 AAA ATPase domain 2e-06 28.0 0.1 1.5e-05 25.2 0.1 2.3 1 AAA_22 AAA domain 8.9e-06 24.5 0.0 0.00088 18.0 0.0 2.1 2 AAA_13 AAA domain 1.4e-05 24.0 0.2 0.21 10.3 0.0 2.9 2 ABC_ATPase Predicted ATPase of the ABC class 4.5e-05 23.4 0.6 0.00017 21.5 0.5 1.9 1 ATPase_2 ATPase domain predominantly from Archaea 0.00019 21.0 0.1 0.00031 20.3 0.1 1.3 1 AAA_29 P-loop containing region of AAA domain 0.00035 20.9 0.0 0.0005 20.4 0.0 1.4 1 AAA_16 AAA ATPase domain 0.0016 18.3 0.7 0.0045 16.8 0.3 2.0 2 RsgA_GTPase RsgA GTPase 0.0026 17.4 0.0 0.0042 16.8 0.0 1.4 1 PRK Phosphoribulokinase / Uridine kinase family 0.0031 17.8 0.4 0.049 14.0 0.3 2.4 1 AAA ATPase family associated with various cellula 0.0032 16.3 0.6 0.015 14.1 0.0 1.9 2 Rad17 Rad17 cell cycle checkpoint protein 0.0034 17.5 0.3 0.067 13.3 0.3 2.3 1 SbcCD_C Putative exonuclease SbcCD, C subunit 0.0038 17.1 0.0 0.048 13.6 0.0 2.2 2 AAA_14 AAA domain 0.009 15.0 0.1 0.014 14.3 0.1 1.7 1 NB-ARC NB-ARC domain ------ inclusion threshold ------ 0.013 16.0 2.5 0.013 16.0 2.5 1.7 2 AAA_23 AAA domain 0.018 14.7 0.2 0.1 12.2 0.0 2.1 2 ATP_bind_1 Conserved hypothetical ATP binding protein 0.021 14.3 0.0 1.3 8.5 0.0 2.3 1 CobU Cobinamide kinase / cobinamide phosphate guan 0.021 13.5 0.0 0.034 12.8 0.0 1.3 1 RNA12 RNA12 protein 0.024 14.3 0.0 0.079 12.6 0.0 1.9 2 AAA_24 AAA domain 0.025 13.7 0.1 0.032 13.3 0.1 1.4 1 G-alpha G-protein alpha subunit 0.036 13.7 0.0 0.16 11.5 0.0 1.8 2 AAA_30 AAA domain 0.038 13.4 0.3 0.51 9.7 0.0 2.2 2 RecA recA bacterial DNA recombination protein 0.042 13.9 0.0 0.066 13.3 0.0 1.7 1 AAA_33 AAA domain 0.054 12.4 0.2 0.093 11.7 0.2 1.4 1 T2SSE Type II/IV secretion system protein 0.064 13.7 0.2 0.13 12.7 0.2 1.8 1 AAA_18 AAA domain 0.088 13.2 0.7 0.77 10.2 0.1 2.6 2 EF-G-binding_N Elongation factor G-binding protein, N-termin 0.1 12.9 0.0 0.34 11.2 0.0 1.9 1 RNA_helicase RNA helicase 0.12 11.8 0.3 0.45 10.0 0.0 2.0 3 AAA_25 AAA domain 0.14 11.2 0.3 1.4 7.9 0.0 2.1 2 DAP3 Mitochondrial ribosomal death-associated prot 0.15 11.9 0.0 0.42 10.4 0.0 1.8 2 NACHT NACHT domain Domain annotation for each model (and alignments): >> ABC_tran ABC transporter # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 138.5 0.0 3.5e-43 1.8e-40 1 137 [] 17 165 .. 17 165 .. 0.92 Alignments for each domain: == domain 1 score: 138.5 bits; conditional E-value: 3.5e-43 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTEEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH.. CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF ABC_tran 1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren.. 79 lkn+s ++++ge++ i+G++G+GKSt+l+++ +l++pt+G+i +dg dl + +++++ r+++g+++q+ +lfp++tv en 23726_FusoPortal_Gene_1590 17 LKNISTTINKGEIISIIGPSGSGKSTFLRCINKLEEPTKGHIYIDGMDLMDknTDINKIRERVGMVFQHFNLFPNMTVLENlt 99 79**********************************************99989999*************************** PP ........HHHTCHHHHHHCSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF ABC_tran 80 ........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 es+ee+ek++s l k ++++s ps+LSgGqkqr+a+aral+ kp+++l+DEpt+ 23726_FusoPortal_Gene_1590 100 lspimvkkESKEEAEKYASYLLEKVGLSDKANSYPSQLSGGQKQRIAIARALAMKPEVILFDEPTS 165 ******99777776666666655555666777778*****************************96 PP >> AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.6 0.1 1.9e-05 0.0098 3 20 .. 31 48 .. 29 61 .. 0.86 2 ! 33.0 0.0 1e-10 5.1e-08 233 297 .. 133 194 .. 103 198 .. 0.88 Alignments for each domain: == domain 1 score: 15.6 bits; conditional E-value: 1.9e-05 AAA_21 3 vliGpNgsGKSnLLdald 20 +iGp gsGKS++L+++ 23726_FusoPortal_Gene_1590 31 SIIGPSGSGKSTFLRCIN 48 69**************94 PP == domain 2 score: 33.0 bits; conditional E-value: 1e-10 AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297 +++lS G+k+ +a++ al+ + ++l+DEp + L+P++++++l+++++l+++g i++TH 23726_FusoPortal_Gene_1590 133 YPSQLSGGQKQRIAIARALAMKP---EVILFDEPTSALDPEMIKEVLDVMRDLAKEGMTMIIVTH 194 467899****9988888888766...9************************************** PP >> SMC_N RecF/RecN/SMC N terminal domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.5 2.1 1.3e-11 6.4e-09 19 205 .. 23 202 .. 3 214 .. 0.75 Alignments for each domain: == domain 1 score: 35.5 bits; conditional E-value: 1.3e-11 EE-TTSSEEEEEESTTSSHHHHHHHHHHHHTT.TSSS--HHHHCCCT--.SSSSSTTCCEEEECEEECCEE-B----BEEEEE CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 19 ilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisr 101 +++ + ++ +i+Gp GSGKs +l i L e ++ ++ + + dl+ k ++ + + +v ++f++ + +++ e + 23726_FusoPortal_Gene_1590 23 TIN-KGEIISIIGPSGSGKSTFLRCI-NKLEEPTKGHIYIDGM-DLMDK-NTDINKIRERVGMVFQHFNLFPNMTVLENLTLS 101 222.335789****************.7899888778877665.78887.677777788999999888887555544444444 PP EEETTT-EEEEETTEEE-HHHHHHHHHCTT--TTCS-HHHHHHHHHHHHHHHHTCS--SEEEECSTTTTS-HHHHHHHHHHHH CS xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF SMC_N 102 rvkrkgeseykingkevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk 184 ++ k+es+ + ++ e l +a+ ++++LSgG+k+ +a+a +A+ kp+ + l+De +aLD + +k+v ++++ 23726_FusoPortal_Gene_1590 102 PIMVKKESKEEAEKYASYLLEKVGLSDKANSYPSQLSGGQKQRIAIARALAM---KPE-VILFDEPTSALDPEMIKEVLDVMR 180 4555555566667767777777778888888899*************99886...455.579********************* PP HHCCT.SEEEEE-SSHHHHTT- CS xxxxx.xxxxxxxxxxxxxxxx RF SMC_N 185 ekskn.aQfivislreemleka 205 k+ + +i+++++ ++ +++ 23726_FusoPortal_Gene_1590 181 DLAKEgMTMIIVTHEMGFAKNV 202 99888799******99988876 PP >> AAA_15 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.7 1.5 5.9e-08 3e-05 10 102 .. 13 111 .. 8 129 .. 0.69 2 ! 11.7 0.0 0.00026 0.13 288 380 .. 112 194 .. 99 199 .. 0.78 Alignments for each domain: == domain 1 score: 23.7 bits; conditional E-value: 5.9e-08 AAA_15 10 NFRslkdteidldee.ltvliGkNnsGKSsilealdlflnnkekknenkvikiekedlekfeniseskeikIdvef....... 84 N + lk+++ +++ + +iG+ +sGKS++l+ ++++ + ++ i+i+ dl +++ + +++ ++ + f 23726_FusoPortal_Gene_1590 13 NLKVLKNISTTINKGeIISIIGPSGSGKSTFLRCINKLEEPT-----KGHIYIDGMDLMDKNTDINKIRERVGMVFqhfnlfp 90 4455566555555547*******************9999988.....899**************************7777666 PP AAA_15 85 .............liefeyledkkkilklks 102 ++++k+ 23726_FusoPortal_Gene_1590 91 nmtvlenltlspiM----------VKKESKE 111 66643322222221..........2222222 PP == domain 2 score: 11.7 bits; conditional E-value: 0.00026 AAA_15 288 kkfgykgkkneeieikdgeelplnynGsGvqrlillillileaekkdeneekinilaiEEPEahlHPqlqkvlikllkelann 370 + ++y + e++ ++d+ +++ ++ + G+++ i ++ +++ +++++EP l P++ k++ + +++la++ 23726_FusoPortal_Gene_1590 112 EAEKYASYLLEKVGLSDKANSYPSQLSGGQKQRIAIARALAMKP---------EVILFDEPTSALDPEMIKEVLDVMRDLAKE 185 34455555555555559999999999999999988876555544.........56**************************** PP AAA_15 371 nktQviitTH 380 + ii TH 23726_FusoPortal_Gene_1590 186 GM-TMIIVTH 194 *7.8999999 PP >> AAA_22 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 25.2 0.1 2.9e-08 1.5e-05 5 129 .. 27 193 .. 23 201 .. 0.79 Alignments for each domain: == domain 1 score: 25.2 bits; conditional E-value: 2.9e-08 AAA_22 5 agilvvtGesGtGKTtllrrlleqldeeakaee....................................erpevv......fv 45 i+ ++G+sG+GK+t lr + + + + + + e v 23726_FusoPortal_Gene_1590 27 GEIISIIGPSGSGKSTFLRCINKLEEPTKGHIYidgmdlmdkntdinkirervgmvfqhfnlfpnmtvlE----NltlspiMV 105 6799****************9999877777777999**************99999999999996666643....034455466 PP AAA_22 46 tlpsstsskdllrellralglelkaerlsseell.ealeqalrarav...ielliiDEaqh.lrseealeeLrsllnl.srkg 122 + s+++ ++ ++ ll+++gl+ ka + ++l + ++ + ara +e+++ DE l +e+++e+ + + + ++ g 23726_FusoPortal_Gene_1590 106 KKESKEEAEKYASYLLEKVGLSDKA-NSYPSQLSgGQKQRIAIARALamkPEVILFDEPTSaL-DPEMIKEVLDVMRDlAKEG 186 6666669999999999999999999.4444444447777777777767799********9999.8999999988888787788 PP AAA_22 123 vqliLvG 129 +++i+v 23726_FusoPortal_Gene_1590 187 MTMIIVT 193 8888775 PP >> AAA_13 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 5.0 0.0 0.015 7.4 21 51 .. 32 62 .. 22 146 .. 0.74 2 ! 18.0 0.0 1.7e-06 0.00088 525 580 .. 153 205 .. 135 225 .. 0.90 Alignments for each domain: == domain 1 score: 5.0 bits; conditional E-value: 0.015 AAA_13 21 iYGwNGaGKTtLSrllrslelgetepkfang 51 i G G+GK+t+ r +++le+ + + g 23726_FusoPortal_Gene_1590 32 IIGPSGSGKSTFLRCINKLEEPTKGHIYIDG 62 66899**************987666666555 PP == domain 2 score: 18.0 bits; conditional E-value: 1.7e-06 AAA_13 525 gkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580 k +++ +D P S LD +++ v +++ + k+ ++i TH + f k+v ++ 23726_FusoPortal_Gene_1590 153 MKPEVILFDEPTSALDPEMIKEVLDVMRDLA---KEGMTMIIVTHEMGFAKNVGNR 205 3899**************************9...8888999**********99886 PP >> ABC_ATPase Predicted ATPase of the ABC class # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 10.3 0.0 0.00041 0.21 241 298 .. 23 84 .. 12 96 .. 0.78 2 ! 9.6 0.0 0.00066 0.34 322 394 .. 136 192 .. 125 233 .. 0.71 Alignments for each domain: == domain 1 score: 10.3 bits; conditional E-value: 0.00041 EE-SS.EEEEEE-TTSSHHHHHHHH...HHCCSEE-TTSS-TTEEE-TT-EEE---TT--EE CS ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAl...ekGvynhvpgDGRefvvtdktavkiraEdgrsvk 298 i kG ++ I+G+ GKsT L+ + e+ h+ DG +++ + ++ kir g+ + 23726_FusoPortal_Gene_1590 23 TINKGeIISIIGPSGSGKSTFLRCInklEEPTKGHIYIDGMDLMDKNTDINKIRERVGMVFQ 84 588999****************9862226788889999998888888888888866666555 PP == domain 2 score: 9.6 bits; conditional E-value: 0.00066 S--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEE CS ABC_ATPase 322 dASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilv 394 + SG q +i++al ++ +++L+DE tsA e i+ ++d +r+l +k g+++i+v 23726_FusoPortal_Gene_1590 136 QLSGGQKQRIAIARALAMKPEVILFDEPTSALD---------------PEMIKEVLDVMRDL-AKEGMTMIIV 192 5699999***********************953...............22233334444444.4445555555 PP >> ATPase_2 ATPase domain predominantly from Archaea # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 21.5 0.5 3.4e-07 0.00017 8 93 .. 17 128 .. 13 206 .. 0.57 Alignments for each domain: == domain 1 score: 21.5 bits; conditional E-value: 3.4e-07 ATPase_2 8 lkeleeilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefie.................... 70 lk++ + +++ ei+ i Gp gsGK+++l+ i++le+ k +iy++ + + ++ ++i+ 23726_FusoPortal_Gene_1590 17 LKNISTTINK--GEIISIIGPSGSGKSTFLR-CINKLEEPTKGHIYIDGMDLMDKNTDINKIRervgmvfqhfnlfpnmtvle 96 5666666666..89**************997.789999*9*******987655544444443333336666666666666666 PP ATPase_2 71 .........eeeekkklekalgiavpkaelee 93 ++e+k+++ek+++ ++k+ l 23726_FusoPortal_Gene_1590 97 nltlspimvKKESKEEAEKYASYLLEKVGLSD 128 66666655555555555555555555555533 PP >> AAA_29 P-loop containing region of AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.3 0.1 6.2e-07 0.00031 18 44 .. 23 49 .. 11 59 .. 0.79 Alignments for each domain: == domain 1 score: 20.3 bits; conditional E-value: 6.2e-07 AAA_29 18 eldlkgvtlltGpsGsGKSTllDAiqa 44 ++++ +++ ++GpsGsGKST+l i+ 23726_FusoPortal_Gene_1590 23 TINKGEIISIIGPSGSGKSTFLRCINK 49 56644599*************976665 PP >> AAA_16 AAA ATPase domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.4 0.0 9.8e-07 0.0005 20 52 .. 25 65 .. 14 192 .. 0.63 Alignments for each domain: == domain 1 score: 20.4 bits; conditional E-value: 9.8e-07 AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekd...........g 52 ++ +e++ ++G+sG+GKs+ +r++ + le+ 23726_FusoPortal_Gene_1590 25 NK--GEIISIIGPSGSGKSTFLRCINK-LEEPtkghiyidgmdL 65 33..489******************95.6655454444444440 PP >> RsgA_GTPase RsgA GTPase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 0.3 9e-06 0.0045 81 122 .. 8 50 .. 1 81 [. 0.77 2 ? -0.4 0.0 1.7 8.7e+02 52 72 .. 59 79 .. 51 126 .. 0.50 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 9e-06 E--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS RsgA_GTPase 81 lvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpe 122 + + + l+++++ +++ +++ ++G+SG GKSt++ ++ 23726_FusoPortal_Gene_1590 8 SKNFGNLKVLKNISTTINKgEIISIIGPSGSGKSTFLRCINKL 50 55555667889999999888****************9888764 PP == domain 2 score: -0.4 bits; conditional E-value: 1.7 EEE-GGG--HHHHHHHHHHHH CS RsgA_GTPase 52 vlnKiDlleeeeeleelkeel 72 ++ +Dl+++++++++++e++ 23726_FusoPortal_Gene_1590 59 YIDGMDLMDKNTDINKIRERV 79 555555555555444433332 PP >> PRK Phosphoribulokinase / Uridine kinase family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.8 0.0 8.2e-06 0.0042 1 64 [. 29 86 .. 29 126 .. 0.69 Alignments for each domain: == domain 1 score: 16.8 bits; conditional E-value: 8.2e-06 PRK 1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsfl 64 +I++ g+SG+Gk+t+ r ++k+ + ++ ++ + +d ++k++ +++ +++ + ++++ 23726_FusoPortal_Gene_1590 29 IISIIGPSGSGKSTFLRCINKLEE-PTKG-----HIYIDGMDLMDKNTDINKIRERVGMVFQHF 86 8*****************998755.3333.....344444555555555555555554444444 PP >> AAA ATPase family associated with various cellular activities (AAA) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.0 0.3 9.7e-05 0.049 3 111 .. 32 195 .. 30 202 .. 0.82 Alignments for each domain: == domain 1 score: 14.0 bits; conditional E-value: 9.7e-05 EESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCCSS.............................................. CS AAA 3 lyGppGtGKTllakavakelg..vefleisgsellsk.............................................. 37 ++Gp G GK+++ + + k + + i+g++l++k 23726_FusoPortal_Gene_1590 32 IIGPSGSGKSTFLRCINKLEEptKGHIYIDGMDLMDKntdinkirervgmvfqhfnlfpnmtvlenltlspimvkkeskeeae 114 78***********9997664332457889999999888999999999999999999999999999999999999999999999 PP ..................STTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHCHHHSSCSTHHHHHHHHHHHHHHHHTTTSSS CS AAA 38 ..................yvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkes 101 y ++ + ++ ++ a++ a kp ++++DE + + ++++ l ++ ++ k+ 23726_FusoPortal_Gene_1590 115 kyasyllekvglsdkansYPSQLSGGQKQRIAIARALAmKPEVILFDEPTSALDPE----------MIKEVLDVMRDLAKE-- 185 9999999999999999998888888888888888888888********98887777..........788888888888884.. PP TEEEEEEESS CS AAA 102 kvivigatnr 111 +++i++t++ 23726_FusoPortal_Gene_1590 186 GMTMIIVTHE 195 4677777766 PP >> Rad17 Rad17 cell cycle checkpoint protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.1 0.0 3e-05 0.015 43 114 .. 25 100 .. 13 124 .. 0.73 2 ? 0.7 0.2 0.34 1.7e+02 127 226 .. 149 240 .. 104 242 .. 0.60 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 3e-05 Rad17 43 rkkriLLisGPsGCgkstvvkvLskelgi.klrewlnpvsl..kepsn.qksdfkgltekesrflsqiesfkeleL 114 +k +i+ i GPsG gkst ++ + k + k + +++++ l k+++ + + g++ ++ ++ + + + ++l L 23726_FusoPortal_Gene_1590 25 NKGEIISIIGPSGSGKSTFLRCINKLEEPtKGHIYIDGMDLmdKNTDInKIRERVGMVFQHFNLFPNMTVLENLTL 100 4556999******************665416667888888822444434777777877666667888888887766 PP == domain 2 score: 0.7 bits; conditional E-value: 0.34 Rad17 127 kdlrgkkklilvedlPnkFnidl.dafrevirkaltssealplilviteieslegdnnqrkysfsaetim.nkeileeprvkr 207 l k ++il ++ + ++ + + +v+r + e +++i+v e+ ++ n + m n ei e+++ k 23726_FusoPortal_Gene_1590 149 RALAMKPEVILFDEPTSALDPEMiKEVLDVMRDLAK--EGMTMIIVTHEMGFAKNVGNRIL-------FMdNGEIIEDCSPKD 222 455555566666665565555554555555555433..33457777777777766666665.......331558888888888 PP Rad17 208 ikFnPiaptllkkfLksiv 226 nP + +k fL++++ 23726_FusoPortal_Gene_1590 223 FFENPTNER-IKDFLNKVL 240 888887765.466666665 PP >> SbcCD_C Putative exonuclease SbcCD, C subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.3 0.3 0.00013 0.067 31 89 .. 135 180 .. 112 181 .. 0.73 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 0.00013 SbcCD_C 31 gtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 ++lSGG+kq +a+a ++ +++++++DE s lD+e+i+++l++++ 23726_FusoPortal_Gene_1590 135 SQLSGGQKQR---IAIA----RALAM------KPEVILFDEPTSALDPEMIKEVLDVMR 180 5667777733...2222....22222......4789********************997 PP >> AAA_14 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.6 0.0 9.4e-05 0.048 2 48 .. 27 72 .. 26 95 .. 0.77 2 ? 1.3 0.0 0.59 3e+02 63 97 .. 153 192 .. 101 195 .. 0.68 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 9.4e-05 AAA_14 2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkklad 48 ++i+ i G+ +GK+t+l+ + ++l + + +yi+ d dk+ + 23726_FusoPortal_Gene_1590 27 GEIISIIGPSGSGKSTFLRCI-NKLEEPTKGHIYIDGMDLMDKNTDI 72 5799*************8655.55556999*****999988866543 PP == domain 2 score: 1.3 bits; conditional E-value: 0.59 AAA_14 63 ekktylflDEiqev......pewekalkslvdegknldviv 97 k +++++DE + +e+ +++++l +eg +iv 23726_FusoPortal_Gene_1590 153 MKPEVILFDEPTSAldpemiKEVLDVMRDLAKEG-MTMIIV 192 3678899999887767666677777777777777.445555 PP >> NB-ARC NB-ARC domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.3 0.1 2.8e-05 0.014 8 49 .. 16 57 .. 13 234 .. 0.83 Alignments for each domain: == domain 1 score: 14.3 bits; conditional E-value: 2.8e-05 HHHHHHTCTSSSEEEEEEESTTSSHHHHHHHHTCSCCCCCCC CS NB-ARC 8 viekLleledelgivalvGmgGvGKttlakqilkddslvegr 49 v ++ + + ++ +i+++ G G+GK+t ++ i+k ++ ++g+ 23726_FusoPortal_Gene_1590 16 VLKNISTTINKGEIISIIGPSGSGKSTFLRCINKLEEPTKGH 57 5666666567789********************866644443 PP >> AAA_23 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 16.0 2.5 2.5e-05 0.013 6 39 .. 10 47 .. 8 48 .. 0.70 2 ? -1.7 0.0 6.6 3.3e+03 151 155 .. 109 113 .. 65 156 .. 0.57 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 2.5e-05 AAA_23 6 nfrsf...rdqeidFsk.gltlItGpNGaGKTTildAi 39 nf+ + ++ + +k + I Gp G+GK+T+l++i 23726_FusoPortal_Gene_1590 10 NFGNLkvlKNISTTINKgEIISIIGPSGSGKSTFLRCI 47 6666644444333444426899***************9 PP == domain 2 score: -1.7 bits; conditional E-value: 6.6 AAA_23 151 kkerl 155 ke+ 23726_FusoPortal_Gene_1590 109 SKEEA 113 22222 PP >> ATP_bind_1 Conserved hypothetical ATP binding protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.2 0.0 0.0002 0.1 1 29 [. 32 60 .. 32 121 .. 0.86 2 ? 0.4 0.0 0.86 4.3e+02 127 201 .. 157 232 .. 146 240 .. 0.67 Alignments for each domain: == domain 1 score: 12.2 bits; conditional E-value: 0.0002 ATP_bind_1 1 vvGpaGsGKttfvgalseilelskrsvav 29 ++Gp GsGK+tf++ ++++ e +k ++++ 23726_FusoPortal_Gene_1590 32 IIGPSGSGKSTFLRCINKLEEPTKGHIYI 60 79************999998888877776 PP == domain 2 score: 0.4 bits; conditional E-value: 0.86 ATP_bind_1 127 vylvDsqrltdptkfisgllsalsimlklelPhvvalnkfDllkeklekeleffedvealqallekd..lkklaesi 201 v l+D ++++ + i+++l + ++k +++++++ ++ +k + ++ f+ + e ++ kd + +e i 23726_FusoPortal_Gene_1590 157 VILFDEPTSALDPEMIKEVLDVMRDLAKEGMTMIIVTHEMGFAK-NVGNRILFMDNGEIIEDCSPKDffENPTNERI 232 55666666666666677777777778888888888888888855.66677777777777777777766544444555 PP >> CobU Cobinamide kinase / cobinamide phosphate guanyltransferase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 8.5 0.0 0.0026 1.3 74 128 .. 144 198 .. 30 210 .. 0.72 Alignments for each domain: == domain 1 score: 8.5 bits; conditional E-value: 0.0026 CobU 74 evvLvDcltlwltnllleeeaekveekleeeveellealkelkatvvlVsnEvgl 128 ++++ +l++ + +l++e +++ + ++ +ev ++++ l++ +t+++V+ E+g+ 23726_FusoPortal_Gene_1590 144 RIAIARALAMKPEVILFDEPTSALDPEMIKEVLDVMRDLAKEGMTMIIVTHEMGF 198 4444444445555556665555577788888888888888899999999999886 PP >> RNA12 RNA12 protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.8 0.0 6.6e-05 0.034 19 66 .. 29 78 .. 15 103 .. 0.76 Alignments for each domain: == domain 1 score: 12.8 bits; conditional E-value: 6.6e-05 RNA12 19 FivvkGPrGSGkkeLvldrvlkdrkk....vlvidCdelvkarndaelisaa 66 i + GP GSGk+ ++ r +++ ++ +++id +l++ +d ++i++ 23726_FusoPortal_Gene_1590 29 IISIIGPSGSGKSTFL--RCINKLEEptkgHIYIDGMDLMDKNTDINKIRER 78 68899*********99..666665555668***************9999864 PP >> AAA_24 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 0.00016 0.079 5 23 .. 30 52 .. 26 122 .. 0.76 2 ? -1.0 0.0 2.2 1.1e+03 159 186 .. 171 210 .. 161 216 .. 0.54 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 0.00016 AAA_24 5 iliyGpsgiGKTtlakel....g 23 i i+Gpsg+GK+t+++ + + 23726_FusoPortal_Gene_1590 30 ISIIGPSGSGKSTFLRCInkleE 52 789************98855442 PP == domain 2 score: -1.0 bits; conditional E-value: 2.2 AAA_24 159 elkeevDlvlranlkred............kvgervlkts 186 +ke +D++ ++ + + +vg r+l+ + 23726_FusoPortal_Gene_1590 171 MIKEVLDVMRDLAKEGMTmiivthemgfakNVGNRILFMD 210 4555555555555443334444444555555566666655 PP >> G-alpha G-protein alpha subunit # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.1 6.3e-05 0.032 22 51 .. 27 65 .. 9 238 .. 0.66 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 6.3e-05 .EEEEEEEESTTSSHHHHHHHHHHHCS--..........- CS G-alpha 22 revkllllGqseSGKsTilkqlkllykkg..........f 51 e+ + ++G s+SGKsT+l+ + +l++++ 23726_FusoPortal_Gene_1590 27 GEI-ISIIGPSGSGKSTFLRCINKLEEPTkghiyidgmdL 65 333.7899****************9988866665555442 PP >> AAA_30 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.0 0.00033 0.16 14 45 .. 24 54 .. 17 69 .. 0.80 2 ? -0.3 0.0 1.4 7e+02 81 121 .. 141 191 .. 104 196 .. 0.55 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 0.00033 AAA_30 14 ltsgdrvavltGpAGtGKttalkalreaweaa 45 +++g+ + + Gp G+GK+t l+ ++++ e 23726_FusoPortal_Gene_1590 24 INKGE-IISIIGPSGSGKSTFLRCINKLEEPT 54 44554.88899************999987766 PP == domain 2 score: -0.3 bits; conditional E-value: 1.4 AAA_30 81 k......grarlepg.tllivDEagmv.dtkqlaallkaaek...agakvil 121 + +ra l+ + ++++ DE + d ++++++l+ +++ +g+++i+ 23726_FusoPortal_Gene_1590 141 QkqriaiARA-LAMKpEVILFDEPTSAlDPEMIKEVLDVMRDlakEGMTMII 191 1555555333.33334888888854443665555555555442114565555 PP >> RecA recA bacterial DNA recombination protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 9.7 0.0 0.001 0.51 49 94 .. 23 67 .. 2 71 .. 0.78 2 ? 1.5 0.0 0.31 1.6e+02 186 199 .. 72 85 .. 68 96 .. 0.86 Alignments for each domain: == domain 1 score: 9.7 bits; conditional E-value: 0.001 SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEESS---- CS RecA 49 GlpkGriieiyGpessGkttlalhaiaeaqkkggvaafidaehald 94 + kG ii i Gp sGk+t+ l+ i + ++ ++ +id +d 23726_FusoPortal_Gene_1590 23 TINKGEIISIIGPSGSGKSTF-LRCINKLEEPTKGHIYIDGMDLMD 67 578****************97.888988888888888888766555 PP == domain 2 score: 1.5 bits; conditional E-value: 0.31 EEE----------- CS RecA 186 inqirekiGvmfgn 199 in+ire++G++f 23726_FusoPortal_Gene_1590 72 INKIRERVGMVFQH 85 9**********975 PP >> AAA_33 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 0.00013 0.066 2 18 .. 30 46 .. 29 201 .. 0.86 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 0.00013 AAA_33 2 vllvGlpGsGKstlaer 18 + ++G++GsGKst+++ 23726_FusoPortal_Gene_1590 30 ISIIGPSGSGKSTFLRC 46 5689**********985 PP >> T2SSE Type II/IV secretion system protein # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.7 0.2 0.00018 0.093 118 151 .. 16 49 .. 3 86 .. 0.78 Alignments for each domain: == domain 1 score: 11.7 bits; conditional E-value: 0.00018 T2SSE 118 iaevlrkavrerglilvsGgTgsGKttllyallk 151 + + +++ +++ +i + G+ gsGK+t+l + k 23726_FusoPortal_Gene_1590 16 VLKNISTTINKGEIISIIGPSGSGKSTFLRCINK 49 5666788888889999*************86544 PP >> AAA_18 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.2 0.00026 0.13 1 22 [. 30 51 .. 30 162 .. 0.79 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 0.00026 AAA_18 1 IlltGtpGvGKttlareLskrl 22 I + G++G+GK+t+ r ++k++ 23726_FusoPortal_Gene_1590 30 ISIIGPSGSGKSTFLRCINKLE 51 6799************998886 PP >> EF-G-binding_N Elongation factor G-binding protein, N-terminal # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.2 0.1 0.0015 0.77 43 77 .. 87 122 .. 68 125 .. 0.83 2 ? -0.0 0.0 2.4 1.2e+03 43 60 .. 222 240 .. 211 242 .. 0.81 Alignments for each domain: == domain 1 score: 10.2 bits; conditional E-value: 0.0015 EF-G-binding_N 43 elfpelseeqkelLeqiddik.tkekaeklLeeLke 77 +lfp+++ ++ L++i+ k +ke+aek+ + L e 23726_FusoPortal_Gene_1590 87 NLFPNMTVLENLTLSPIMVKKeSKEEAEKYASYLLE 122 56****************************887765 PP == domain 2 score: -0.0 bits; conditional E-value: 2.4 EF-G-binding_N 43 elfpelseeq.kelLeqid 60 ++f+++++e+ k++L+++ 23726_FusoPortal_Gene_1590 222 DFFENPTNERiKDFLNKVL 240 5788888888899998886 PP >> RNA_helicase RNA helicase # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.2 0.0 0.00066 0.34 2 37 .. 31 61 .. 30 68 .. 0.81 Alignments for each domain: == domain 1 score: 11.2 bits; conditional E-value: 0.00066 RNA_helicase 2 wlyGpsgeGKStlakeLakallkklklkkkdsvysr 37 + Gpsg GKSt+ + +kl++++k+++y+ 23726_FusoPortal_Gene_1590 31 SIIGPSGSGKSTFLRC-----INKLEEPTKGHIYID 61 689***********99.....456668888998874 PP >> AAA_25 AAA domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.0 0.0 0.00089 0.45 26 50 .. 20 44 .. 15 48 .. 0.88 2 ? -1.4 0.0 2.6 1.3e+03 135 172 .. 48 86 .. 43 93 .. 0.75 3 ? -2.5 0.0 5.8 2.9e+03 166 185 .. 173 191 .. 143 195 .. 0.53 Alignments for each domain: == domain 1 score: 10.0 bits; conditional E-value: 0.00089 AAA_25 26 vkgllpagelallaGapgtGKttla 50 + + +ge++ ++G++g+GK+t++ 23726_FusoPortal_Gene_1590 20 ISTTINKGEIISIIGPSGSGKSTFL 44 5567899****************97 PP == domain 2 score: -1.4 bits; conditional E-value: 2.6 AAA_25 135 aaieevegvrlvviDplsralgg.densnsdv.galveal 172 +++ee + ++++iD ++ + + d n+ ++ g++++++ 23726_FusoPortal_Gene_1590 48 NKLEE-PTKGHIYIDGMDLMDKNtDINKIRERvGMVFQHF 86 56677.7788999999999999888888777447777766 PP == domain 3 score: -2.5 bits; conditional E-value: 5.8 AAA_25 166 galvealeriarrtgaavll 185 +++++ ++++a + g + ++ 23726_FusoPortal_Gene_1590 173 KEVLDVMRDLA-KEGMTMII 191 33333344442.33444444 PP >> DAP3 Mitochondrial ribosomal death-associated protein 3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 1.5 0.1 0.25 1.3e+02 20 40 .. 26 44 .. 12 49 .. 0.67 2 ? 7.9 0.0 0.0028 1.4 250 290 .. 93 131 .. 61 144 .. 0.85 Alignments for each domain: == domain 1 score: 1.5 bits; conditional E-value: 0.25 SS---EEEEE-SSSSSTTTTH CS DAP3 20 kkkvkrlvltGekgsGKSvlL 40 k++ + G gsGKS+ L 23726_FusoPortal_Gene_1590 26 KGEII--SIIGPSGSGKSTFL 44 44443..356********998 PP == domain 2 score: 7.9 bits; conditional E-value: 0.0028 ...........EEE-----GGGTHHHHHHHHHTT---STTS CS DAP3 250 rvaealkgkvepieveglskeEarslleyyadsgvlqekvn 290 v+e+l+ ++pi v++ skeEa+++ +y++++ l++k n 23726_FusoPortal_Gene_1590 93 TVLENLT--LSPIMVKKESKEEAEKYASYLLEKVGLSDKAN 131 6778888..9**********************999988754 PP >> NACHT NACHT domain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.4 0.0 0.00083 0.42 3 20 .. 30 47 .. 28 57 .. 0.87 2 ? -1.5 0.0 3.9 2e+03 79 99 .. 52 72 .. 47 122 .. 0.67 Alignments for each domain: == domain 1 score: 10.4 bits; conditional E-value: 0.00083 NACHT 3 vilqGeaGsGKTtLlqkl 20 + + G++GsGK+t+l+ + 23726_FusoPortal_Gene_1590 30 ISIIGPSGSGKSTFLRCI 47 6799***********977 PP == domain 2 score: -1.5 bits; conditional E-value: 3.9 NACHT 79 lperlLlilDglDelvtdlgq 99 p++ + +Dg+D + + + 23726_FusoPortal_Gene_1590 52 EPTKGHIYIDGMDLMDKNTDI 72 566666778999988875544 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (243 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 682 (0.040809); expected 334.2 (0.02) Passed bias filter: 555 (0.0332097); expected 334.2 (0.02) Passed Vit filter: 120 (0.00718047); expected 16.7 (0.001) Passed Fwd filter: 33 (0.00197463); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 33 [number of targets reported over threshold] # CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.39 # Mc/sec: 1811.30 // [ok]