# hmmscan :: search sequence(s) against a profile database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query sequence file: AA/23726_FusoPortal_Gene_1596.faa # target HMM database: Pfam-A.hmm # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: 23726_FusoPortal_Gene_1596 [L=138] Description: # 1714499 # 1714912 # 1 # ID=1_1596;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.256 Scores for complete sequence (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Model Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0025 17.7 0.0 0.0042 17.0 0.0 1.3 1 DUF3763 Protein of unknown function (DUF3763) ------ inclusion threshold ------ 0.059 13.9 1.0 2.8 8.5 0.0 2.2 2 ThiS ThiS family Domain annotation for each model (and alignments): >> DUF3763 Protein of unknown function (DUF3763) # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.0 0.0 5e-07 0.0042 7 43 .. 80 116 .. 77 118 .. 0.92 Alignments for each domain: == domain 1 score: 17.0 bits; conditional E-value: 5e-07 HHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHH CS DUF3763 7 qleeleqeLrkqrslFhqhqphlFIekewlaaIEaSl 43 + + le+ L +++ F++++ ++FI +e + ++Sl 23726_FusoPortal_Gene_1596 80 KKSNLEKALDTAYLAFEDALYCIFINDEQSEKLDDSL 116 55789***********************999999998 PP >> ThiS ThiS family # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 4.6 0.3 0.0057 48 12 54 .. 17 65 .. 7 77 .. 0.69 2 ? 8.5 0.0 0.00034 2.8 25 71 .. 85 127 .. 63 130 .. 0.76 Alignments for each domain: == domain 1 score: 4.6 bits; conditional E-value: 0.0057 T.TEEEEESSTSBHHHHHHHH.CHHTTHHH....TTTTEEEEETTEEEG CS ThiS 12 g.eeelelaegstvaelleaL.gerypela....lerrvavavNgeivp 54 + ee+++++ st ++l+ +L + + ++ ++ + ++ N+ i++ 23726_FusoPortal_Gene_1596 17 HqEEVELINKISTTKDLITELvKINVEKFNkkidDKDILSIMTNEYIAE 65 3588999999***********5233332225556667777777776665 PP == domain 2 score: 8.5 bits; conditional E-value: 0.00034 HHHHHHHCHHTTHHHTTTTEEEEETTEEEGCCTTTSB--TTCEEEEE CS ThiS 25 aelleaLgerypelalerrvavavNgeivprlwldtelkdgDevail 71 + +l+ + + + + +N+e ++l ++ lkdgD + ++ 23726_FusoPortal_Gene_1596 85 EKALDTAYLAF----EDALYCIFINDEQSEKLDDSLNLKDGDILTFI 127 44444432222....4589999*********999999*******998 PP Internal pipeline statistics summary: ------------------------------------- Query sequence(s): 1 (138 residues searched) Target model(s): 16712 (2907032 nodes) Passed MSV filter: 728 (0.0435615); expected 334.2 (0.02) Passed bias filter: 341 (0.0204045); expected 334.2 (0.02) Passed Vit filter: 29 (0.00173528); expected 16.7 (0.001) Passed Fwd filter: 2 (0.000119674); expected 0.2 (1e-05) Initial search space (Z): 16712 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.22u 0.23s 00:00:00.45 Elapsed: 00:00:00.32 # Mc/sec: 1253.66 // [ok]